CcUC05G105360.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC05G105360.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr05: 32852530 .. 32853454 (+)
Sequence length	183
RNA-Seq Expression	CcUC05G105360.1
Synteny	CcUC05G105360.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGTGACTGATAAGAGGCCTAAAAAGTCAAGCAAAAGCTAGGGGCATGGCATTTGAAGTTGATGTGACATTTTTCTTTTTTGGAAACTCCTTTTAGTTGCAACTTGCATTGGTCACTTAATCTGCTGATTCGTGCTGAAGCTTTTAGTCAAAATATCAGACATGTGAGCAATCTCTCCCATGTACAGATCTTGATCTTAAGCTAGTTAGCTTCCTTTTCCCTCTTTAAGTGCATTAATGAAACTCAGATGGGTGGCAATTATATAAAAAAAAAAAAAAAATCTAATCAGAACTATATGAGTGAGAAAGGGAGGGGGGATGAAAAACAAGAAGAAAACAGGTTGTTTAACCAGTAGAGTACTGACCTGAAAGCATGGAAAAATTCATATGATGCAGATAATCTTGGTTACCACCCACATAGAATGTGAAGAAAAAAGCAGATGCTCAGATGCTTACCCATAAAACAGGAAAATACAATGAAAGAGACTGTTCAATAGAAAGTGAACATGAAAAGTGCTGCATCATCAAGCTAAGAAACAGCATCCCATAAATGAAGAGATTTTCTTTATATTTTAGGAAGGTTGGTCTTTGCATTTGATTAATTACTCTTTGGCTGTACTGGAAGTGAACTGACATACGGCAGCTCTTGAGTGTCCTGCCTTTTCTCATAATCAGGTTAGTTATTTTGGATTAAGATTTGATTACCACAGTTGCATGATCCTACAGTCAGTGATAGGTGATTCAGGGTCTGGCAGTATTGTCTAACTAAGAACAAACAAATCCTATTTTTAAATGCAAAAATCTTCCGTCTAGAAAAAAAGTGAAGGAGAATCTGAACAGAACTGCCAGATTTTTAAAGAGTCTTGCCTGTTTCTCTTTACTTCAGTCACTGTTCACAGAGTAAAGTGAAGACATGCTAA

mRNA sequence

ATGGCAAATTGCAACTTGCATTGGTCACTTAATCTGCTGATTCGTGCTGAAGCTTTTAGTCAAAATATCAGACATGAAGGTTGGTCTTTGCATTTGATTAATTACTCTTTGGCTGTACTGGAATTGCATGATCCTACAGTCAGTGATAGTCACTGTTCACAGAGTAAAGTGAAGACATGCTAA

Coding sequence (CDS)

ATGGCAAATTGCAACTTGCATTGGTCACTTAATCTGCTGATTCGTGCTGAAGCTTTTAGTCAAAATATCAGACATGAAGGTTGGTCTTTGCATTTGATTAATTACTCTTTGGCTGTACTGGAATTGCATGATCCTACAGTCAGTGATAGTCACTGTTCACAGAGTAAAGTGAAGACATGCTAA

Protein sequence

MANCNLHWSLNLLIRAEAFSQNIRHEGWSLHLINYSLAVLELHDPTVSDSHCSQSKVKTC

Homology

The following BLAST results are available for this feature:

BLAST of CcUC05G105360.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G105360.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G105360.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G105360.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC05G105360	CcUC05G105360	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G105360.1-exon	CcUC05G105360.1-exon-CicolChr05:32852530..32852537	exon
CcUC05G105360.1-exon	CcUC05G105360.1-exon-CicolChr05:32852632..32852698	exon
CcUC05G105360.1-exon	CcUC05G105360.1-exon-CicolChr05:32853111..32853158	exon
CcUC05G105360.1-exon	CcUC05G105360.1-exon-CicolChr05:32853245..32853270	exon
CcUC05G105360.1-exon	CcUC05G105360.1-exon-CicolChr05:32853421..32853454	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G105360.1-cds	CcUC05G105360.1-cds-CicolChr05:32852530..32852537	CDS
CcUC05G105360.1-cds	CcUC05G105360.1-cds-CicolChr05:32852632..32852698	CDS
CcUC05G105360.1-cds	CcUC05G105360.1-cds-CicolChr05:32853111..32853158	CDS
CcUC05G105360.1-cds	CcUC05G105360.1-cds-CicolChr05:32853245..32853270	CDS
CcUC05G105360.1-cds	CcUC05G105360.1-cds-CicolChr05:32853421..32853454	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC05G105360.1	CcUC05G105360.1-protein	polypeptide