CcUC05G103340.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC05G103340.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	thioredoxin-like 3-2, chloroplastic
Location	CicolChr05: 31109938 .. 31111519 (-)
Sequence length	609
RNA-Seq Expression	CcUC05G103340.1
Synteny	CcUC05G103340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAAGCTTTGCCCCTTCACCTCGGAATCGTGAAATCTTTTCTCAAATTCGACGGTTCTTTTGATCTTCCTCCGCCTCCACAACTTCCGTCCGCGAGGCTGGCCGGCTCTGGTTTCAACAGGCTTCCTTTGTCCCGGAAATTTCCGCCGCTTTCCCAGAAAGTTTCTGCGACTGGTGAGAAGACTTCGCTGCTCGGAGCTTGGACCCGAGACAGCGCCCTCCAATTTCGAGATGAATCGCCTGTTTCAATTGAACTCAAGTCCATTCGCAGTGAACTTGAGTTCGATAAGGCTATTGCAGATGCGAAGGAACGCAACGAGCTCGTGATTCTTGTATGGTGTGTATACATTTCTTGTGGGTTTTTTTCTGGGAAATGTTGAGTTAATTACGGAAGTTTCTTACAAAGCGTTTTTCGGCTAATAGTTTTAGAGAAAGAAATCTAGACGATGTGAATGTATTTGAGTTTGACTGGATCTTGTTTAATTAGAAATTTATTTGTTTATTAGGAAAAATTGTTCTCAACTGCTAGATTTTCCCTGGGGTTTCACTGAAATTGATTAACCTTCTTTGTACATGGATTGTGATATTTTTCTCCACTTTTCCTTACAAGCATTTCAAGTACATTTCTCACAGTTTTATCTTCTTTAGTTGAAAATTGAATTTATGTGGATCTGTAGGATGGCCAACTGGTGCAGAAATTATATTTATTTAAAACCCCAACTGGAAAGATTGGCTGCTGATTATTACCCCAGGTTAGCTCCTAGACCATTTCTTCTGACCAACCAAATGGCTAAAATTGAACTATATTATCATTCTCCATGTGCTGGACAATACTTAAAAGACCAGTGTGCCAGTCCTTATTGAAGTTGTGTGTGTGCTTGATGAATTGTAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCCGGATTAGCTGTAAGTTCCTTTCAAATCCTTTTGATGTTTTTCCATTTTGTTTGTATTGGCATAAACCTTGATAATGATCTTCTTTAGGTAGGACGGTTATGATAAATTCTACTTCTCTGAGGGAGTGCTTTTCTTTGGATACTTGAGGTTCTGTTTGCAATAGAAATCAGGACTTGTGTTTCATTAACTTCAGGAACATTTCCAATTTGCAGTTTGGACATAGGAGACAGTAGACATGTTGAGTTTGTGTTACATCGATGGATGAGTTGATTGAATAAACTACATTCTGTTTAATCTTTCATTTTAATATGTCCAAACATAAAATCTTTCCGTTCATTGGTTGAGTGATACAAATTCTGATAGTTTTGATTTTGTATGTTTTCCCATGTATCTCAACCGTTCATCTTTGAATCATCCAGAAGATGCCAGCTATACAGGTGAGTTTCCTCACAATCAGATGTGTTACAGCTGGAAACCTTCCTCTCTACTAATGTCAAGATCTTGATTGTGTTTGTTGCAGCTATGGAAGGATGGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGATGTTCGGAAAATGATTGAACGTGAGCTAACAGGCGAGTGA

mRNA sequence

ATGGTCAAAGCTTTGCCCCTTCACCTCGGAATCGTGAAATCTTTTCTCAAATTCGACGGTTCTTTTGATCTTCCTCCGCCTCCACAACTTCCGTCCGCGAGGCTGGCCGGCTCTGGTTTCAACAGGCTTCCTTTGTCCCGGAAATTTCCGCCGCTTTCCCAGAAAGTTTCTGCGACTGGTGAGAAGACTTCGCTGCTCGGAGCTTGGACCCGAGACAGCGCCCTCCAATTTCGAGATGAATCGCCTGTTTCAATTGAACTCAAGTCCATTCGCAGTGAACTTGAGTTCGATAAGGCTATTGCAGATGCGAAGGAACGCAACGAGCTCGTGATTCTTGTATGGATGGCCAACTGGTGCAGAAATTATATTTATTTAAAACCCCAACTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCCGGATTAGCTAAGATGCCAGCTATACAGCTATGGAAGGATGGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGATGTTCGGAAAATGATTGAACGTGAGCTAACAGGCGAGTGA

Coding sequence (CDS)

ATGGTCAAAGCTTTGCCCCTTCACCTCGGAATCGTGAAATCTTTTCTCAAATTCGACGGTTCTTTTGATCTTCCTCCGCCTCCACAACTTCCGTCCGCGAGGCTGGCCGGCTCTGGTTTCAACAGGCTTCCTTTGTCCCGGAAATTTCCGCCGCTTTCCCAGAAAGTTTCTGCGACTGGTGAGAAGACTTCGCTGCTCGGAGCTTGGACCCGAGACAGCGCCCTCCAATTTCGAGATGAATCGCCTGTTTCAATTGAACTCAAGTCCATTCGCAGTGAACTTGAGTTCGATAAGGCTATTGCAGATGCGAAGGAACGCAACGAGCTCGTGATTCTTGTATGGATGGCCAACTGGTGCAGAAATTATATTTATTTAAAACCCCAACTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCCGGATTAGCTAAGATGCCAGCTATACAGCTATGGAAGGATGGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGATGTTCGGAAAATGATTGAACGTGAGCTAACAGGCGAGTGA

Protein sequence

MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATGEKTSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIGLYKAYLVVNDVRKMIERELTGE

Homology

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BLAST of CcUC05G103340.1 vs. NCBI nr
Match: XP_038891538.1 (thioredoxin-like 3-2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104
Identity = 193/203 (95.07%), Postives = 198/203 (97.54%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLHLGIVKSF KFDGSFDLPPPPQLPSARLAGSGFNRLPL RKFPPLSQKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAGSGFNRLPLCRKFPPLSQKVSATG 60

Query: 61  EK-TSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWC 120
           EK TSLLGAWT+DS LQFRDESPVSIELKSI SELEFDKAIADA++RNELVILVWMANWC
Sbjct: 61  EKTTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWC 120

Query: 121 RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVI 180
           RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVI
Sbjct: 121 RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVI 180

Query: 181 GLYKAYLVVNDVRKMIERELTGE 203
           GLYKAYLV+NDV+KMIERELTGE
Sbjct: 181 GLYKAYLVINDVQKMIERELTGE 203

[Close]

BLAST of CcUC05G103340.1 vs. NCBI nr
Match: XP_008446852.1 (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo] >TYK09259.1 thioredoxin-like 3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 383.6 bits (984), Expect = 1.0e-102
Identity = 190/202 (94.06%), Postives = 194/202 (96.04%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLHLGIVKSF KFD SFDLPP PQL SARL GSGFNRLPLSRKFPP+ QKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCR 120
           EKTSLLGAWT+DSALQFRDESPVSIELKSI SELEFDKAIADA+ERNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVRKMIERELTGE 203
           LYKAYLVVNDVRKMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of CcUC05G103340.1 vs. NCBI nr
Match: XP_038891539.1 (thioredoxin-like 3-2, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 382.1 bits (980), Expect = 3.0e-102
Identity = 192/203 (94.58%), Postives = 197/203 (97.04%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLHLGIVKSF KFDGSFDLPPPPQLPSARLAGSGFNRLPL RKFPPLSQKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAGSGFNRLPLCRKFPPLSQKVSATG 60

Query: 61  EK-TSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWC 120
           EK TSLLGAWT+DS LQFRDESPVSIELKSI SELEFDKAIADA++RNELVILVWMANWC
Sbjct: 61  EKTTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWC 120

Query: 121 RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVI 180
           RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA MPAIQLWKDGKKQDEVI
Sbjct: 121 RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA-MPAIQLWKDGKKQDEVI 180

Query: 181 GLYKAYLVVNDVRKMIERELTGE 203
           GLYKAYLV+NDV+KMIERELTGE
Sbjct: 181 GLYKAYLVINDVQKMIERELTGE 202

[Close]

BLAST of CcUC05G103340.1 vs. NCBI nr
Match: XP_004142496.2 (thioredoxin-like 3-2, chloroplastic isoform X1 [Cucumis sativus] >KGN52252.1 hypothetical protein Csa_008733 [Cucumis sativus])

HSP 1 Score: 377.9 bits (969), Expect = 5.6e-101
Identity = 188/202 (93.07%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLH GIVKSF KF  SFDLPP PQL SARLAGSGFNRLPLSRKFPPL QKVSATG
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKTSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCR 120
           EKTSL GAWT+DSALQFRDESPVSIELKSI SELEFDKAIADA+ERNELVILVWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVN+VPHKLVVRAGLAKMPAIQLWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVRKMIERELTGE 203
           LYKAYLVVNDVRKMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of CcUC05G103340.1 vs. NCBI nr
Match: XP_008446851.1 (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo])

HSP 1 Score: 377.9 bits (969), Expect = 5.6e-101
Identity = 190/206 (92.23%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLHLGIVKSF KFD SFDLPP PQL SARL GSGFNRLPLSRKFPP+ QKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCR 120
           EKTSLLGAWT+DSALQFRDESPVSIELKSI SELEFDKAIADA+ERNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA----KMPAIQLWKDGKKQD 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA    KMPAIQLWKDGKKQD
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAVGLEKMPAIQLWKDGKKQD 180

Query: 181 EVIGLYKAYLVVNDVRKMIERELTGE 203
           EV+GLYKAYLVVNDVRKMIERELT E
Sbjct: 181 EVVGLYKAYLVVNDVRKMIERELTDE 206

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy Swiss-Prot
Match: Q8VZT6 (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.2e-43
Identity = 86/171 (50.29%), Postives = 119/171 (69.59%), Query Frame = 0


Query: 28  PQLPSARLAGSGFNRLPLSRKFPPLSQKVSATGEKTSLLGAWTRDSALQFRDESPVSIEL 87
           P +P  R   S F+R P + K+   + K+    E+   +    +D  LQ  D+SPVS+EL
Sbjct: 20  PLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVEL 79

Query: 88  KSIRSELEFDKAIADAKERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDV 147
             I  E  FD+ + DA++  E V++VWMA WCR  IYLKP+LE+LAA++YPRL+FY +DV
Sbjct: 80  GPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV 139

Query: 148 NMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIGLYKAYLVVNDVRKMIERE 199
           N VP++LV RAG+ KMP IQLW+DG+KQ EVIG +KA+ VVN+VR+MIE +
Sbjct: 140 NAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy Swiss-Prot
Match: Q9FG36 (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-27
Identity = 53/116 (45.69%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 82  PVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQ 141
           P ++E++ I +  E D  ++ A++ ++ +I+ WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIGLYKAYLVVNDVRKMIER 198
           FY +DVN VP  LV R  ++KMP IQLWK+ + ++EVIG +K +LV+ +VR++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy Swiss-Prot
Match: Q6Z7L3 (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 53/113 (46.90%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 85  IELKSIRSELEFDKAIADAKERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYC 144
           +E++ I S  + D A+  + E  + +I+ WMA+WCR  IYLKP+LE++A + +P ++FY 
Sbjct: 80  VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGE-FPGVRFYF 139

Query: 145 IDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIGLYKAYLVVNDVRKMIER 198
           +DVN VP  +V R  + KMP IQLWKDG+   EVIG +KA+LV+++VR+MI++
Sbjct: 140 VDVNKVPQTVVKRGNITKMPTIQLWKDGEWAAEVIGGHKAWLVMDEVREMIQK 191

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy Swiss-Prot
Match: P80028 (Thioredoxin H-type OS=Chlamydomonas reinhardtii OX=3055 GN=TRXH PE=1 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 6.4e-07
Identity = 28/91 (30.77%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 90  IRSELEFDKAIADAKERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNM 149
           I S+  +D  +A  KE ++ +++ + A WC     + P  E L+ DY  ++ F  +DV+ 
Sbjct: 8   IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 67

Query: 150 VPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 181
           V   +   AG+  MP   ++KDG K D+++G
Sbjct: 68  VA-AVAEAAGITAMPTFHVYKDGVKADDLVG 97

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy Swiss-Prot
Match: P37395 (Thioredoxin OS=Cyanidium caldarium OX=2771 GN=trxA PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.5e-05
Identity = 26/104 (25.00%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 92  SELEFDKAIADAKERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNMVP 151
           ++  F+K + +++   +LV++ + A WC     + P ++ LA +Y  +++   I+ +  P
Sbjct: 8   TDFSFEKEVVNSE---KLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENP 67

Query: 152 HKLVVRAGLAKMPAIQLWKDGKKQDEVIGLYKAYLVVNDVRKMI 196
             +    G+  +P + L+KDGK+ D VIG      + N ++K +
Sbjct: 68  -SISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy TrEMBL
Match: A0A5D3CG32 (Thioredoxin-like 3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002530 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 4.9e-103
Identity = 190/202 (94.06%), Postives = 194/202 (96.04%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLHLGIVKSF KFD SFDLPP PQL SARL GSGFNRLPLSRKFPP+ QKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCR 120
           EKTSLLGAWT+DSALQFRDESPVSIELKSI SELEFDKAIADA+ERNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVRKMIERELTGE 203
           LYKAYLVVNDVRKMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy TrEMBL
Match: A0A1S3BGQ4 (thioredoxin-like 3-2, chloroplastic isoform X8 OS=Cucumis melo OX=3656 GN=LOC103489448 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 4.9e-103
Identity = 190/202 (94.06%), Postives = 194/202 (96.04%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLHLGIVKSF KFD SFDLPP PQL SARL GSGFNRLPLSRKFPP+ QKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCR 120
           EKTSLLGAWT+DSALQFRDESPVSIELKSI SELEFDKAIADA+ERNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVRKMIERELTGE 203
           LYKAYLVVNDVRKMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy TrEMBL
Match: A0A0A0KUX7 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622670 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.7e-101
Identity = 188/202 (93.07%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLH GIVKSF KF  SFDLPP PQL SARLAGSGFNRLPLSRKFPPL QKVSATG
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKTSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCR 120
           EKTSL GAWT+DSALQFRDESPVSIELKSI SELEFDKAIADA+ERNELVILVWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVN+VPHKLVVRAGLAKMPAIQLWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVRKMIERELTGE 203
           LYKAYLVVNDVRKMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy TrEMBL
Match: A0A1S3BG27 (thioredoxin-like 3-2, chloroplastic isoform X7 OS=Cucumis melo OX=3656 GN=LOC103489448 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.7e-101
Identity = 190/206 (92.23%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLHLGIVKSF KFD SFDLPP PQL SARL GSGFNRLPLSRKFPP+ QKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCR 120
           EKTSLLGAWT+DSALQFRDESPVSIELKSI SELEFDKAIADA+ERNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA----KMPAIQLWKDGKKQD 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA    KMPAIQLWKDGKKQD
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAVGLEKMPAIQLWKDGKKQD 180

Query: 181 EVIGLYKAYLVVNDVRKMIERELTGE 203
           EV+GLYKAYLVVNDVRKMIERELT E
Sbjct: 181 EVVGLYKAYLVVNDVRKMIERELTDE 206

[Close]

BLAST of CcUC05G103340.1 vs. ExPASy TrEMBL
Match: A0A1S3BGW0 (thioredoxin-like 3-2, chloroplastic isoform X9 OS=Cucumis melo OX=3656 GN=LOC103489448 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.6e-101
Identity = 189/202 (93.56%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFLKFDGSFDLPPPPQLPSARLAGSGFNRLPLSRKFPPLSQKVSATG 60
           MVKALPLHLGIVKSF KFD SFDLPP PQL SARL GSGFNRLPLSRKFPP+ QKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTRDSALQFRDESPVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCR 120
           EKTSLLGAWT+DSALQFRDESPVSIELKSI SELEFDKAIADA+ERNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA MPAIQLWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA-MPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVRKMIERELTGE 203
           LYKAYLVVNDVRKMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 201

[Close]

BLAST of CcUC05G103340.1 vs. TAIR 10
Match: AT5G04260.1 (WCRKC thioredoxin 2 )

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-44
Identity = 86/171 (50.29%), Postives = 119/171 (69.59%), Query Frame = 0


Query: 28  PQLPSARLAGSGFNRLPLSRKFPPLSQKVSATGEKTSLLGAWTRDSALQFRDESPVSIEL 87
           P +P  R   S F+R P + K+   + K+    E+   +    +D  LQ  D+SPVS+EL
Sbjct: 20  PLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVEL 79

Query: 88  KSIRSELEFDKAIADAKERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDV 147
             I  E  FD+ + DA++  E V++VWMA WCR  IYLKP+LE+LAA++YPRL+FY +DV
Sbjct: 80  GPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV 139

Query: 148 NMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIGLYKAYLVVNDVRKMIERE 199
           N VP++LV RAG+ KMP IQLW+DG+KQ EVIG +KA+ VVN+VR+MIE +
Sbjct: 140 NAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of CcUC05G103340.1 vs. TAIR 10
Match: AT5G06690.1 (WCRKC thioredoxin 1 )

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-28
Identity = 53/116 (45.69%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 82  PVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQ 141
           P ++E++ I +  E D  ++ A++ ++ +I+ WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIGLYKAYLVVNDVRKMIER 198
           FY +DVN VP  LV R  ++KMP IQLWK+ + ++EVIG +K +LV+ +VR++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

[Close]

BLAST of CcUC05G103340.1 vs. TAIR 10
Match: AT5G06690.2 (WCRKC thioredoxin 1 )

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-16
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 82  PVSIELKSIRSELEFDKAIADAKERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQ 141
           P ++E++ I +  E D  ++ A++ ++ +I+ WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLA 162
           FY +DVN VP  LV R  ++
Sbjct: 153 FYYVDVNKVPQTLVKRGNIS 172

The following BLAST results are available for this feature:

BLAST of CcUC05G103340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891538.1	3.2e-104	95.07	thioredoxin-like 3-2, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_008446852.1	1.0e-102	94.06	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo] >TYK092...	[more]
XP_038891539.1	3.0e-102	94.58	thioredoxin-like 3-2, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_004142496.2	5.6e-101	93.07	thioredoxin-like 3-2, chloroplastic isoform X1 [Cucumis sativus] >KGN52252.1 hyp...	[more]
XP_008446851.1	5.6e-101	92.23	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo]	[more]

BLAST of CcUC05G103340.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT6	4.2e-43	50.29	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC2 PE...	[more]
Q9FG36	3.3e-27	45.69	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE...	[more]
Q6Z7L3	1.5e-24	46.90	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
P80028	6.4e-07	30.77	Thioredoxin H-type OS=Chlamydomonas reinhardtii OX=3055 GN=TRXH PE=1 SV=3	[more]
P37395	3.5e-05	25.00	Thioredoxin OS=Cyanidium caldarium OX=2771 GN=trxA PE=3 SV=1	[more]

BLAST of CcUC05G103340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CG32	4.9e-103	94.06	Thioredoxin-like 3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A1S3BGQ4	4.9e-103	94.06	thioredoxin-like 3-2, chloroplastic isoform X8 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KUX7	2.7e-101	93.07	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622670...	[more]
A0A1S3BG27	2.7e-101	92.23	thioredoxin-like 3-2, chloroplastic isoform X7 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A1S3BGW0	4.6e-101	93.56	thioredoxin-like 3-2, chloroplastic isoform X9 OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of CcUC05G103340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04260.1	3.0e-44	50.29	WCRKC thioredoxin 2	[more]
AT5G06690.1	2.3e-28	45.69	WCRKC thioredoxin 1	[more]
AT5G06690.2	4.5e-16	43.75	WCRKC thioredoxin 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 83..196 e-value: 1.1E-13 score: 52.9
None	No IPR available	PANTHER	PTHR47192:SF4	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 38..199
None	No IPR available	CDD	cd02947	TRX_family	coord: 95..196 e-value: 8.48718E-13 score: 59.8793
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 93..184 e-value: 1.6E-9 score: 37.7
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 43..200 score: 9.344801
IPR044253	Thioredoxin-like 3-1/3-2	PANTHER	PTHR47192	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 38..199
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 88..196

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC05G103340	CcUC05G103340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G103340.1-exon	CcUC05G103340.1-exon-CicolChr05:31109938..31110045	exon
CcUC05G103340.1-exon	CcUC05G103340.1-exon-CicolChr05:31110129..31110146	exon
CcUC05G103340.1-exon	CcUC05G103340.1-exon-CicolChr05:31110557..31110623	exon
CcUC05G103340.1-exon	CcUC05G103340.1-exon-CicolChr05:31110764..31110838	exon
CcUC05G103340.1-exon	CcUC05G103340.1-exon-CicolChr05:31111179..31111519	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G103340.1-cds	CcUC05G103340.1-cds-CicolChr05:31109938..31110045	CDS
CcUC05G103340.1-cds	CcUC05G103340.1-cds-CicolChr05:31110129..31110146	CDS
CcUC05G103340.1-cds	CcUC05G103340.1-cds-CicolChr05:31110557..31110623	CDS
CcUC05G103340.1-cds	CcUC05G103340.1-cds-CicolChr05:31110764..31110838	CDS
CcUC05G103340.1-cds	CcUC05G103340.1-cds-CicolChr05:31111179..31111519	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC05G103340.1	CcUC05G103340.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma