CcUC05G092040.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC05G092040.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Signaling peptide TAXIMIN 2
Location	CicolChr05: 9759894 .. 9760698 (-)
Sequence length	562
RNA-Seq Expression	CcUC05G092040.1
Synteny	CcUC05G092040.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGAAATGCTTTAATACATGCTTATAATTTTGATCTCAAAAAGTTATGGCATGCTGCAGGCCATTAGGGTTCTTGATAGGCCTTCCTTTTTGCCTTCTTTCCTTGTCTCTCTCCTTCATTGGTGCTCTTCTTTGGATCTTTTGGTGAGTTATTTCTTTTCTTTATCTTATATTCATATATTTTTCTTTTCGCCTTTTTCAATTTTCCATTTCGAAATTAAAATCTAACTTTCTCCAAATGCATGCATAGATTTTTTCGTATTTGACTTGTAATCTATGTATTGTTTTTAACTTCTCGATCGTTAAAGTATTTGCATGTGTCGCAATGTTTTTCAGGCTTTGTCTTCTTTTTATTAATGTTTGTTTGATTTTGATAATTGGGTATAGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTTTTGCTGTACTTTCAGATTTTTCAATCAGCCTTTTGAAGCTTCCCATCAAAGTAATGGACTGGTTCATTAGCTTCATTCCTTTTTAGGGTTTTTTTTTTTTTTTTAGGGAAATTGAAAATTCCACTTAATTCATAGGAAGAGAAATAATGTTTATATAATTACAAATTTTTGGGCATTTGTAGTATGTATGGATTTTGTCAGAAGAGCAATCTCTCTTATATACACAATATTATAACAGGAGATGTAGTTTGCTCTTGAAAACTTCTGCGAGAAAATTCAACATGATGTCGATGCTAGGTTAAATTATAATAGTTTAGGCTTCATTCGATAATCGTTTGATTTTTTATTTTTATTTTTTTAATTAAGCTTGTAATTAAC

mRNA sequence

AAATTGAAATGCTTTAATACATGCTTATAATTTTGATCTCAAAAAGTTATGGCATGCTGCAGGCCATTAGGGTTCTTGATAGGCCTTCCTTTTTGCCTTCTTTCCTTGTCTCTCTCCTTCATTGGTGCTCTTCTTTGGATCTTTTGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTTTTGCTGTACTTTCAGATTTTTCAATCAGCCTTTTGAAGCTTCCCATCAAAGTAATGGACTGGTTCATTAGCTTCATTCCTTTTTAGGGTTTTTTTTTTTTTTTTAGGGAAATTGAAAATTCCACTTAATTCATAGGAAGAGAAATAATGTTTATATAATTACAAATTTTTGGGCATTTGTAGTATGTATGGATTTTGTCAGAAGAGCAATCTCTCTTATATACACAATATTATAACAGGAGATGTAGTTTGCTCTTGAAAACTTCTGCGAGAAAATTCAACATGATGTCGATGCTAGGTTAAATTATAATAGTTTAGGCTTCATTCGATAATCGTTTGATTTTTTATTTTTATTTTTTTAATTAAGCTTGTAATTAAC

Coding sequence (CDS)

ATGGCATGCTGCAGGCCATTAGGGTTCTTGATAGGCCTTCCTTTTTGCCTTCTTTCCTTGTCTCTCTCCTTCATTGGTGCTCTTCTTTGGATCTTTTGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTTTTGCTGTACTTTCAGATTTTTCAATCAGCCTTTTGAAGCTTCCCATCAAAGTAATGGACTGGTTCATTAGCTTCATTCCTTTTTAG

Protein sequence

MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLPIKVMDWFISFIPF

Homology

[Close]

BLAST of CcUC05G092040.1 vs. NCBI nr
Match: XP_004146276.1 (signaling peptide TAXIMIN 1-like [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 3.3e-27
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLP 60
          MACCRPLGFLIGLPF +LSL LSFIGALLWIFWSLLSCICPCCVCFAVLSD SISLLKLP
Sbjct: 1  MACCRPLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLP 60

Query: 61 IKVMDWFISFIP 73
          I VMDWF+S IP
Sbjct: 61 IDVMDWFVSLIP 72

[Close]

BLAST of CcUC05G092040.1 vs. NCBI nr
Match: XP_008456209.1 (PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 5.8e-24
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 5  RPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLPIKVM 64
          +PLGFLIGLPF  LSL LSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISL+KLPI VM
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLMKLPINVM 63

Query: 65 DWFISFIP 73
          DWFI  IP
Sbjct: 64 DWFIDLIP 71

[Close]

BLAST of CcUC05G092040.1 vs. NCBI nr
Match: XP_022988826.1 (uncharacterized protein LOC111486053 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLP 60
          MACCRPLGFLIGLPF LLSLSLS IGALL+IF S+LSCICPCCVC A+L  FSI+L+KLP
Sbjct: 1  MACCRPLGFLIGLPFALLSLSLSCIGALLFIFLSILSCICPCCVCVAILISFSINLVKLP 60

Query: 61 IKVMDWFISFIPF 74
          I V+ WF   IPF
Sbjct: 61 IDVIIWFTDMIPF 73

[Close]

BLAST of CcUC05G092040.1 vs. NCBI nr
Match: KAB5534589.1 (hypothetical protein DKX38_017675 [Salix brachista] >KAG5235431.1 signaling peptide TAXIMIN [Salix suchowensis])

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 45/72 (62.50%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLP 60
          M  CRPLGFLIGLPF L++L LS +GA++W+  ++LSC+CPCC+CFA L++F++SL+KLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLSLVGAVVWVIGTVLSCLCPCCICFAGLANFAVSLVKLP 60

Query: 61 IKVMDWFISFIP 73
          +KVM WFI  IP
Sbjct: 61 VKVMKWFIDLIP 72

[Close]

BLAST of CcUC05G092040.1 vs. NCBI nr
Match: XP_028792972.1 (signaling peptide TAXIMIN 2-like [Prosopis alba] >XP_028793377.1 signaling peptide TAXIMIN 2-like [Prosopis alba])

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-17
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 4  CRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLPIKV 63
          CRPLGFLIGLPF L SL LS +GA++WI  S+LSC+CPCC+CFA L++F++ L+KLPI+V
Sbjct: 6  CRPLGFLIGLPFALASLLLSLVGAVIWIIGSVLSCLCPCCICFAALANFAMGLIKLPIQV 65

Query: 64 MDWFISFIP 73
          M WFI  IP
Sbjct: 66 MQWFIDKIP 74

[Close]

BLAST of CcUC05G092040.1 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-18
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLP 60
          M  CRPLGFLIGLPF L++L L+ +GA++WI  ++LSC+CPCC CFA L++F++ L+KLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLP 60

Query: 61 IKVMDWFISFIP 73
          IKV+ WF   IP
Sbjct: 61 IKVLRWFTHSIP 72

[Close]

BLAST of CcUC05G092040.1 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-17
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 4  CRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLPIKV 63
          CRPLGFL+GLPF  LSL LS IG ++WI   LLSCICPCC+C  VL + +I L+K PI V
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHV 65

Query: 64 MDWFISFIP 73
          M+WF+S IP
Sbjct: 66 MEWFMSKIP 74

[Close]

BLAST of CcUC05G092040.1 vs. ExPASy TrEMBL
Match: A0A1S3C2P5 (uncharacterized protein LOC103496213 OS=Cucumis melo OX=3656 GN=LOC103496213 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-24
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 5  RPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLPIKVM 64
          +PLGFLIGLPF  LSL LSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISL+KLPI VM
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLMKLPINVM 63

Query: 65 DWFISFIP 73
          DWFI  IP
Sbjct: 64 DWFIDLIP 71

[Close]

BLAST of CcUC05G092040.1 vs. ExPASy TrEMBL
Match: A0A6J1JIC5 (uncharacterized protein LOC111486053 OS=Cucurbita maxima OX=3661 GN=LOC111486053 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLP 60
          MACCRPLGFLIGLPF LLSLSLS IGALL+IF S+LSCICPCCVC A+L  FSI+L+KLP
Sbjct: 1  MACCRPLGFLIGLPFALLSLSLSCIGALLFIFLSILSCICPCCVCVAILISFSINLVKLP 60

Query: 61 IKVMDWFISFIPF 74
          I V+ WF   IPF
Sbjct: 61 IDVIIWFTDMIPF 73

[Close]

BLAST of CcUC05G092040.1 vs. ExPASy TrEMBL
Match: A0A6N2MDW9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358856 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.7e-18
Identity = 45/72 (62.50%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLP 60
          M  CRPLGFLIGLPF L++L LS +GA++W+  ++LSC+CPCC+CFA L++F++SL+KLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLSLVGAVVWVIGTVLSCLCPCCICFAGLANFAVSLVKLP 60

Query: 61 IKVMDWFISFIP 73
          +KVM WFI  IP
Sbjct: 61 VKVMKWFIDLIP 72

[Close]

BLAST of CcUC05G092040.1 vs. ExPASy TrEMBL
Match: A0A5N5KVX7 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_017675 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.7e-18
Identity = 45/72 (62.50%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLP 60
          M  CRPLGFLIGLPF L++L LS +GA++W+  ++LSC+CPCC+CFA L++F++SL+KLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLSLVGAVVWVIGTVLSCLCPCCICFAGLANFAVSLVKLP 60

Query: 61 IKVMDWFISFIP 73
          +KVM WFI  IP
Sbjct: 61 VKVMKWFIDLIP 72

[Close]

BLAST of CcUC05G092040.1 vs. ExPASy TrEMBL
Match: B9HZQ4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G114600 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 45/72 (62.50%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLP 60
          M  C+PLGFLIGLPF L++L LS IGA++W+  ++LSC+CPCC+CFA L++F++SL+KLP
Sbjct: 1  MGDCKPLGFLIGLPFALVALVLSLIGAVIWVIGTVLSCLCPCCICFAGLANFAVSLVKLP 60

Query: 61 IKVMDWFISFIP 73
          +KVM WFI  IP
Sbjct: 61 VKVMRWFIDLIP 72

[Close]

BLAST of CcUC05G092040.1 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 9.3e-20
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLP 60
          M  CRPLGFLIGLPF L++L L+ +GA++WI  ++LSC+CPCC CFA L++F++ L+KLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLP 60

Query: 61 IKVMDWFISFIP 73
          IKV+ WF   IP
Sbjct: 61 IKVLRWFTHSIP 72

[Close]

BLAST of CcUC05G092040.1 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 7.8e-19
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 4  CRPLGFLIGLPFCLLSLSLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLLKLPIKV 63
          CRPLGFL+GLPF  LSL LS IG ++WI   LLSCICPCC+C  VL + +I L+K PI V
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHV 65

Query: 64 MDWFISFIP 73
          M+WF+S IP
Sbjct: 66 MEWFMSKIP 74

The following BLAST results are available for this feature:

BLAST of CcUC05G092040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146276.1	3.3e-27	90.28	signaling peptide TAXIMIN 1-like [Cucumis sativus]	[more]
XP_008456209.1	5.8e-24	88.24	PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo]	[more]
XP_022988826.1	3.9e-20	76.71	uncharacterized protein LOC111486053 [Cucurbita maxima]	[more]
KAB5534589.1	1.4e-17	62.50	hypothetical protein DKX38_017675 [Salix brachista] >KAG5235431.1 signaling pept...	[more]
XP_028792972.1	1.8e-17	66.67	signaling peptide TAXIMIN 2-like [Prosopis alba] >XP_028793377.1 signaling pepti...	[more]

BLAST of CcUC05G092040.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G309	1.3e-18	59.72	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]
O82275	1.1e-17	63.77	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]

BLAST of CcUC05G092040.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2P5	2.8e-24	88.24	uncharacterized protein LOC103496213 OS=Cucumis melo OX=3656 GN=LOC103496213 PE=...	[more]
A0A6J1JIC5	1.9e-20	76.71	uncharacterized protein LOC111486053 OS=Cucurbita maxima OX=3661 GN=LOC111486053...	[more]
A0A6N2MDW9	6.7e-18	62.50	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358856 PE=4 SV=...	[more]
A0A5N5KVX7	6.7e-18	62.50	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_017675 PE=4 SV=1	[more]
B9HZQ4	1.1e-17	62.50	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G114600 PE=4 ...	[more]

BLAST of CcUC05G092040.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20562.1	9.3e-20	59.72	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT2G31090.1	7.8e-19	63.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 1..72
None	No IPR available	PANTHER	PTHR33834:SF10	SUBFAMILY NOT NAMED	coord: 1..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC05G092040	CcUC05G092040	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G092040.1-exon	CcUC05G092040.1-exon-CicolChr05:9759894..9760309	exon
CcUC05G092040.1-exon	CcUC05G092040.1-exon-CicolChr05:9760553..9760698	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G092040.1-three_prime_utr	CcUC05G092040.1-three_prime_utr-CicolChr05:9759894..9760185	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G092040.1-cds	CcUC05G092040.1-cds-CicolChr05:9760186..9760309	CDS
CcUC05G092040.1-cds	CcUC05G092040.1-cds-CicolChr05:9760553..9760650	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G092040.1-five_prime_utr	CcUC05G092040.1-five_prime_utr-CicolChr05:9760651..9760698	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC05G092040.1	CcUC05G092040.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane