CcUC03G054270.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC03G054270.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr03: 25039112 .. 25040489 (-)
Sequence length441
RNA-Seq ExpressionCcUC03G054270.1
SyntenyCcUC03G054270.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCATGTGAACACTTTTGATCCATCTAGACCAGGCCTTTTATAGACATACTAATAATACATACTTAGAACTGACAAACATAGTAAGATTACAATGATCTATTGCTTACTGTTCAAAAATTTTGTCACCACTGATTCAAGCAAACAAACTTATTATGATATGGGCTCTCATCAGCAGCTTCAGCTTTCAGCTAAAACCATAAATAATATGAAAGAAAATTACTTTGCTTTTCTTTCTCATTTTTCCCCCTTACTACATCTATTCATTTCTGGGGCAGAACTAACATATGTTGCAGAATGTAAATACCAACCATATCAACTGCTTCCTGTCCAACAAGTTGTAATATAAAGAAGCTGTTCTATGATTCGGTCATTGCTTCTCGAGGTCCATCGAAAGACTGCGTCTTTCTTAGATTCCAGTGAAGGCCCTCATGGATGCTGCGCAAGAAGTCATTTGTGGAGTCTACCTGGCACGCTGTAGGCACTGGCCAAGGCGCCATGCTGCACACAAGTGCATCTCCCGCTGCCAATTGCTTCCTGTCCTTCCCATCAAAAGACGCCCATGCATGCCCCCTGCTATTGAAGGGTACTTGGATACGTATTGTTACATACTCTGGAAATATCAAGGGTCGGAAAGACAAAGAATGCGGGCATATAGGGGTAAATAGAATGCCGGGAACCTGTGAATGTCACGGTAGCATTTAAGAAATAGTCACTCTTATCCATATAAAAATATCAACTGAACGATCGGTCGACCAAAGTACATACCTGAGGATGAACCATTGATCCCCCAGCAGCCAATGAGTATGCTGTGCTGCCGGAAGTAGTTGATAGAATCAGTCCATCCCCTTGGACACAAGTTACAAAGGAACGGTCACAATAACATTCCAAATTTGTAAGGTATGATGATATTCCGCGATCAATTGTAACCTCATTCAGCACAAGTATAGGTTCTTCCGTTTCGTATTCATTTCTTGCTGCATCTCGAATAACATGACACTGCAGTCGGTGTCGCAATGTAATACTAATTGGACCCTTTAGAACTGAATCCAAGCATTCTTTGTAATGCTCGCTGTCTGAAGCACAGCATGTTAAAGAAACTTTTCAGCAATAAATGGAAATAAACATCATGTGCAATATGTTAGTTTAAGAATAACTTAACATTAAAAGAAGCTATCACATATGCCGTTGGGAATAAAATCAATTAATTTCTGGTTAAATAACAAATTAATTAATCTCCAAGTTAAATAAATCTTCCTCAGAACTGAAGGATACGAAAAGGAGTCATAAAACCCAGAGACCCTAAAGAAAATGGAACAAGTGGAGGAGCTGGTCCTTTAAACATTGATGCTGCCTGCAATCAAGTTCCAAATTAA

mRNA sequence

ATGATTCATATTCCAGTGAAGGCCCTCATGGATGCTGCGCAAGAAGTCATTTGTGGAGTCTACCTGGCACGCTGTAGGCACTGGCCAAGGCGCCATGCTGCACACAAGTGCATCTCCCGCTGCCAATTGCTTCCTGTCCTTCCCATCAAAAGACGCCCATGCATGCCCCCTGCTATTGAAGGGTACTTGGATACGTATTGTTACATACTCTGGAAATATCAAGGGTCGGAAAGACAAAGAATGCGGGCATATAGGGCAGCCAATGAGTATGCTGTGCTGCCGGAAGTAGTTGATAGAATCAGTCCATCCCCTTGGACACAAGTTACAAAGGAACGGATACGAAAAGGAGTCATAAAACCCAGAGACCCTAAAGAAAATGGAACAAGTGGAGGAGCTGGTCCTTTAAACATTGATGCTGCCTGCAATCAAGTTCCAAATTAA

Coding sequence (CDS)

ATGATTCATATTCCAGTGAAGGCCCTCATGGATGCTGCGCAAGAAGTCATTTGTGGAGTCTACCTGGCACGCTGTAGGCACTGGCCAAGGCGCCATGCTGCACACAAGTGCATCTCCCGCTGCCAATTGCTTCCTGTCCTTCCCATCAAAAGACGCCCATGCATGCCCCCTGCTATTGAAGGGTACTTGGATACGTATTGTTACATACTCTGGAAATATCAAGGGTCGGAAAGACAAAGAATGCGGGCATATAGGGCAGCCAATGAGTATGCTGTGCTGCCGGAAGTAGTTGATAGAATCAGTCCATCCCCTTGGACACAAGTTACAAAGGAACGGATACGAAAAGGAGTCATAAAACCCAGAGACCCTAAAGAAAATGGAACAAGTGGAGGAGCTGGTCCTTTAAACATTGATGCTGCCTGCAATCAAGTTCCAAATTAA

Protein sequence

MIHIPVKALMDAAQEVICGVYLARCRHWPRRHAAHKCISRCQLLPVLPIKRRPCMPPAIEGYLDTYCYILWKYQGSERQRMRAYRAANEYAVLPEVVDRISPSPWTQVTKERIRKGVIKPRDPKENGTSGGAGPLNIDAACNQVPN
Homology
The following BLAST results are available for this feature:
BLAST of CcUC03G054270.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC03G054270.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC03G054270.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC03G054270.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..137

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC03G054270CcUC03G054270gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC03G054270.1-exonCcUC03G054270.1-exon-CicolChr03:25039112..25039217exon
CcUC03G054270.1-exonCcUC03G054270.1-exon-CicolChr03:25039615..25039693exon
CcUC03G054270.1-exonCcUC03G054270.1-exon-CicolChr03:25039828..25040074exon
CcUC03G054270.1-exonCcUC03G054270.1-exon-CicolChr03:25040481..25040489exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC03G054270.1-cdsCcUC03G054270.1-cds-CicolChr03:25039112..25039217CDS
CcUC03G054270.1-cdsCcUC03G054270.1-cds-CicolChr03:25039615..25039693CDS
CcUC03G054270.1-cdsCcUC03G054270.1-cds-CicolChr03:25039828..25040074CDS
CcUC03G054270.1-cdsCcUC03G054270.1-cds-CicolChr03:25040481..25040489CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC03G054270.1CcUC03G054270.1-proteinpolypeptide