CcUC03G044330.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC03G044330.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr03: 2174968 .. 2175168 (+)
Sequence length	201
RNA-Seq Expression	CcUC03G044330.1
Synteny	CcUC03G044330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTGCCACTCCAAGTCGCCAAATTCCAAATAACCCACCAAGAAGGGGTCAGATCAAGGTTAAAATTGGTAAGGATTTTGCCACCTCAGCAGCCTCTGCAGCATCCTATATCGCCACCGCACTCGCCGGATTCATCCCAGATCCTACCCCGCCGGAGAATGCTCCGCCGCCCCCTCCGCCCCCTGCCGGTACTTAG

mRNA sequence

ATGGGTTCTGCCACTCCAAGTCGCCAAATTCCAAATAACCCACCAAGAAGGGGTCAGATCAAGGTTAAAATTGGTAAGGATTTTGCCACCTCAGCAGCCTCTGCAGCATCCTATATCGCCACCGCACTCGCCGGATTCATCCCAGATCCTACCCCGCCGGAGAATGCTCCGCCGCCCCCTCCGCCCCCTGCCGGTACTTAG

Coding sequence (CDS)

ATGGGTTCTGCCACTCCAAGTCGCCAAATTCCAAATAACCCACCAAGAAGGGGTCAGATCAAGGTTAAAATTGGTAAGGATTTTGCCACCTCAGCAGCCTCTGCAGCATCCTATATCGCCACCGCACTCGCCGGATTCATCCCAGATCCTACCCCGCCGGAGAATGCTCCGCCGCCCCCTCCGCCCCCTGCCGGTACTTAG

Protein sequence

MGSATPSRQIPNNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPPPPPPPAGT

Homology

[Close]

BLAST of CcUC03G044330.1 vs. NCBI nr
Match: KGN65654.1 (hypothetical protein Csa_019816 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 7.9e-12
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 12 NNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPPPPPPPAG 66
          NNPPRRG+I  KIG+D ATSAA+AASY+  ALAG IPDP PP +APPPPPPPAG
Sbjct: 7  NNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPDPPPPVHAPPPPPPPAG 60

[Close]

BLAST of CcUC03G044330.1 vs. NCBI nr
Match: TYK02876.1 (hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 12 NNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPP 59
          NNPP+RG+IK KIG+D ATSAA+AASY+  ALAG IPD  PP + PP
Sbjct: 7  NNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPP 53

[Close]

BLAST of CcUC03G044330.1 vs. ExPASy TrEMBL
Match: A0A0A0LX95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479110 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 12 NNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPPPPPPPAG 66
          NNPPRRG+I  KIG+D ATSAA+AASY+  ALAG IPDP PP +APPPPPPPAG
Sbjct: 7  NNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPDPPPPVHAPPPPPPPAG 60

[Close]

BLAST of CcUC03G044330.1 vs. ExPASy TrEMBL
Match: A0A5D3BXB9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00050 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.4e-08
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 12 NNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPP 59
          NNPP+RG+IK KIG+D ATSAA+AASY+  ALAG IPD  PP + PP
Sbjct: 7  NNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPP 53

The following BLAST results are available for this feature:

BLAST of CcUC03G044330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65654.1	7.9e-12	75.93	hypothetical protein Csa_019816 [Cucumis sativus]	[more]
TYK02876.1	1.5e-07	68.09	hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa]	[more]

BLAST of CcUC03G044330.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC03G044330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX95	3.8e-12	75.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479110 PE=4 SV=1	[more]
A0A5D3BXB9	7.4e-08	68.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CcUC03G044330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC03G044330	CcUC03G044330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC03G044330.1-exon	CcUC03G044330.1-exon-CicolChr03:2174968..2175168	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC03G044330.1-cds	CcUC03G044330.1-cds-CicolChr03:2174968..2175168	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC03G044330.1	CcUC03G044330.1-protein	polypeptide