CcUC02G041300.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G041300.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 36463324 .. 36465929 (-)
Sequence length	252
RNA-Seq Expression	CcUC02G041300.1
Synteny	CcUC02G041300.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTAAGCATCATTGCTATCACAAAAATATGTTTTTTCATCGACGTACTTCATTATCCAAATTGTTATTTTTTTTTAAGACATGTTTATTAAGTTTTGCATTAATGATGAGAAAAAATCTTTTATGTGTCATAGTGATTACATATGTTTAAAATATTTGTATCATGAAATCCGCTAAATAATGTTTGTGAATATATATATATATATATTTTAAAGAAATCACGAGACAAGAGGGATCAGTAGGTGCACTGGGACATCTCAACTAGGTTGACACCTCCCTACACCCTCATCACGCCCCAAGACCAAAATGCATTCATTCAAAAGTGAAGAACAAGTACAGAGAAGAGCTAGAGTAAAGCTCAATGGTTCAGCACAAATACAAGGAGAAAAGCAGAGGGAAAGCTACAGAAAAGCCTTCCAATTGAGAGAGATGCTAGCTATGCTATAGTTTCAAAAAACAGATGACCTTTTACACCAAAGAGCTGAGAGGTTGAAGTGTCTTCCCAAATTTGTGTTTGAGTTTTTCCACCATCTGGGAAGGTTCTAATGTTCCTTTCTAGCCAAACAGTCCAAAGAGTAGCACCAATCAAGTTCTGTAAGAGAATTCTCCCTTTTGAAGTAGGCTTGAGGGAGGAAAATGAGTGTAATACTTCTGTTAATGAGGAAGGGAACATGGCTGTTCCGTCGACAAAATTATAATAATTCCTCTAAACCTGCCGAGTGTAAGTACGAGTGATAAAGAGATGTTCCAATGCTTCATTCTCTCTTTTGCAAAGCACACACTGAGAGCCAATGAAGAATAGCGCGACTGGCATTTATCAATGGTGTTGATGCTTCTATGATGGAGGGACCAAAGGAAGAACTTACACTTTTTGGGGATAAGGGAGGTCCACACTTGCACAATATCTGGTTGATCAAGCAGACTCTCAAATGCTGACAGAAGCTGCTTCAGGGATTTAATGGAGAAAAATCCTTTATCACCCAGGGTCCAAAGGATTAAGTCGGGCTCCTCAGTGTGTCTTGGAGGCTGCCAGCAAGAGGAGAGCATGGTCCATGCCTACATCTCTCTATCCAAGAGGGCTCTTCTGAAGGATGGTTCCCAGTTTCTTTGACTGGAGTTCCAAGCATCTTTGATTGTGATGAACTTATTTCCAGAGATATTGTAAAATCTCGAACAGTTACTTCTTTTCGTAGTTCCTCCAGCTTAGTTGTGGTACCAAAATAGAGTGTTTGAAGTGTTTGATCCATGTTTGTGAATTTGTTTATGTGAAAGTGTTCATGCATTTTTGTTTCATTACTTCATTGATAATAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATTAACCTTTATTTTGAAAGAAAGTTTTGTGTAAGTTAAAGGAAATTTTGAATTTTCTACCTTCATTATAGTAGCTTTCTTTTTTAAAATAAAACCTCTAAAAAATCATTGATTTCATAAAAAAAAAATGTTCTTTTTCATATAAAGGAGGTAATAAAGAATTTTACTTCCATTATTATTTTAAATAAATAAACTAAACTAAAATCGTCATAAACAACATTTTCATAAAACAAAAAAAGTTTTTGTAAAGTATTCATTTTTTTCAAAAACATATATATTTATTATAATAAAAATTTCCGAAGACAGAAATTAAAGTTTCAAGAGATTGGTTCCTTGGTTTTCTTGAGGGGATGAATTTACTTCGGAAGGCTAAATTAAATTCAATTAAAATTTTTTAATGGTTTTTGACTACTCATAATTATTCTTCATTATTTTTTTTAATAGTGACTAATGAAATATGAGAATTTAAAAATCAACACAAAAACCATCTTTTTGTACAAAGATCATTTTTTTTTTAAATTAACACGAAAAAAAGAAACTTCGTTTTATGAACGAGTATTGTGGGTGTTAATATCTTTTCTGTACATAAAAGAATCCTGAATTTTTCTTTTTTAATCTTTGATTGCATACCATTTTAGTATATTTTTGGTGCCCACCCTCTAAATCAGTACTGGTGGTGACTCTATTTTTCTCTCCTTTTTTTAATCTTTGATTGCATACCATTTTAGTATATTTTTGGTGCCCACCCTCTAAATCAGTACTGGTGGTGACTCTATTTTTCTCTCCGAGGAACAAAATCAGCTGCTCCACAATGCAAACCCGTAG

mRNA sequence

ATGCGACTCTCAAATGCTGACAGAAGCTGCTTCAGGGATTTAATGGAGAAAAATCCTTTATCACCCAGGGTCCAAAGGATTAAGTCGGGCTCCTCAGTGTGTCTTGGAGGCTGCCAGCAAGAGGAGAGCATGGTCCATGCCTACATCTCTCTATCCAAGAGGGCTCTTCTGAAGGATGGTTCCCATACTGGTGGTGACTCTATTTTTCTCTCCGAGGAACAAAATCAGCTGCTCCACAATGCAAACCCGTAG

Coding sequence (CDS)

ATGCGACTCTCAAATGCTGACAGAAGCTGCTTCAGGGATTTAATGGAGAAAAATCCTTTATCACCCAGGGTCCAAAGGATTAAGTCGGGCTCCTCAGTGTGTCTTGGAGGCTGCCAGCAAGAGGAGAGCATGGTCCATGCCTACATCTCTCTATCCAAGAGGGCTCTTCTGAAGGATGGTTCCCATACTGGTGGTGACTCTATTTTTCTCTCCGAGGAACAAAATCAGCTGCTCCACAATGCAAACCCGTAG

Protein sequence

MRLSNADRSCFRDLMEKNPLSPRVQRIKSGSSVCLGGCQQEESMVHAYISLSKRALLKDGSHTGGDSIFLSEEQNQLLHNANP

Homology

The following BLAST results are available for this feature:

BLAST of CcUC02G041300.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G041300.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G041300.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G041300.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G041300	CcUC02G041300	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G041300.1-exon	CcUC02G041300.1-exon-CicolChr02:36463324..36463390	exon
CcUC02G041300.1-exon	CcUC02G041300.1-exon-CicolChr02:36464826..36465005	exon
CcUC02G041300.1-exon	CcUC02G041300.1-exon-CicolChr02:36465925..36465929	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G041300.1-cds	CcUC02G041300.1-cds-CicolChr02:36463324..36463390	CDS
CcUC02G041300.1-cds	CcUC02G041300.1-cds-CicolChr02:36464826..36465005	CDS
CcUC02G041300.1-cds	CcUC02G041300.1-cds-CicolChr02:36465925..36465929	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G041300.1	CcUC02G041300.1-protein	polypeptide