CcUC02G040570.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G040570.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	protein LATERAL ROOT PRIMORDIUM 1-like
Location	CicolChr02: 35820222 .. 35833312 (-)
Sequence length	1566
RNA-Seq Expression	CcUC02G040570.1
Synteny	CcUC02G040570.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGTGAGAATAAAGGGGAGAAAGTACTTGGTGAAGTGGAAGATTCGTGGCCCCAAAGCCAAGCCAAAGGGCCAAAAGGTGCGGCTAAGGCCATTAGAGCTTTTCAGCTTTCTCTTTCACGTCCTCCGACAATCCTTATTTACACTCGTACATTTATATAGCAAAATATCATTGTTTAATGGATATACACTGATAAACTATTAATAAACACAGTAACATTATTGAGTCCTTCAAATTATAATAGTTTCCAAATTTTATTCCTACAATTTAAAATTTGAGAGAAGATTTTACGAAAAATAAAAGTATGATCAATTGTATTGACAACTACGAATATTATTTTTTGGAATAGAAGATTTACGAAAGGGATTAGAGAATTGAGGCATGCAAATAAGCTTTGTTCATAGAGAATACGTCTCTCACTACATTGAGTTACCTAACACTCTACTTTGAAAATAATACGACGTAGTCTTAAGAAATTCTAGTTTTTTGTATGCTGAAAAATCAAAATCTCGAATTGATGAAGAGAAACATCTAGTTTTTTCGGGAAAAGATGGGAGAAAAACTTTTTCTATATTTTGACTCGGGAAGTTCTCATTTTTAATACGAGATTTACCTAAGTTCAAATAAAACTATCACTCACTCCCTATTTGATACTAAGAGGAAATTAATTAATTAAAATATATAAAATATTAAAATATTAAAAATATCCAACAACACCTACTTTAAATTAGTTTTTGAAATGGAAGCGAGAAAATTCGTTTACTACGTTCAATCATGATGTTCACTTTTATCCTTGCTGCATTGGCAATGCAATGTCTTTGTTTGAAAGAATATTGTTCCATAATTTAATTAAAAAAATGATAACGAGAGGTTGGATGATAAATACATGACTATTTATTTGATAAATATAGAAAAAAAAAAATTATTGTCTATCAGCGATATATTGTCATAAAATTTTTCTATTGAACAATATATGACCAGTGATGGAAGTCTATTGAAGATTATACATTTTTAAATATTTTAACTTATTTTGCTATATTTAAACACTCATGAATCTAAGTCATGTCGCTTTTAATTTATACCAAATTAGATTTATGATATTAAAGGTTTTCTTGGAGAGCCGTTGAATTTGAACTACATGGATCCGCTACGATATTGCGAATTTTTTTTTTTTCAAATCAAAAATGTCAAAATTATAATTAAAACTAAATTGAACAAAAACTATGTTTTGAACCATAAAACAAATATATATTTGGATTTGTTTCTATGTAATAATCTTCATGCCATTAGTATCATACAAGACGTATTGAATTTTTCTTTCACAATTTTAAAGTATAATCTTAATCATTAACATGCATTTATTAAGTATTGTAGATCTAAGTTTAAAGGTCCAAGACTTAGATTACATTTTGTTTTGCTTAAAAGGTATGTATATAAATAGAGGGGTACTTTAGAGTATTAAACAATTTATAAACAATTAGATTAGTGTAAATTGTCAAATGTGTATGAATTTATAGATGGATTATAATAATGAGACATTAATATTTTTATTTTTATCATATTATATGACCCCACTTTGGCAAGAAGAGAAAGTGAAATCATTTCTTCCCTATAGGCTACATTCATTGTATGGACAAAGGTAACTTTAAATGAATTGAGAGTGTACTTTTTTTAAGGGGAAAAATATATTTGGATTTTAAATGTTGATTTAAACTAATGCGTGCACATGAATGTGATTCCCTTCTAATATTTTTGACTAATTCTTCATTTCCCATAAAAGGACTAATGTTTTGTAATCTGTCTTTTTCTTTTGTTTTGATTTTATGCACAAATAAATCATATGAAGTTTGAGAATATGTTAAAAATTAACTTTATGTTTCTAGACATAAAATGTTTATACATGTGTGCTAAATGTATAAATTGATATATCAACAGAAAAAAAAAAAAAAAACAATTTTCCCCCTTTTTTTTTTTTTATTATTTTTCGCAAGGCTATGAATAGCATAGTTTTTAAAAGTAAATCCAACCAATGAAATAATTATTTATGGTTAGAATATACAAAATACTCATATGTCACATTATGGATTAAGTTAATTTCCATCTTATTTTGACAAAAAAAAAATGTTTTCTTTTTAGAAAAATAAATTCAAAGCTAAGAAAACGAAAAATTAGTGGTGTGTTTTTTTAACTTTTTCAAGTGTTTAATTTTCAAAATAAATGATTTTGAAAGAAATTATAGTGTTTGATGATTACTATAATTTTTGAAATACTATCCACATGTATTTTAAATAGTTATTTTATCGAAATAGTTAAAATAAAACGACTTTTTAATAACATTTTTTCTCCATTTGAATGAACAGAAAGTCCAAGGACACAATTAAAATTTATTTATTTATTATTTTTATAATTTGTGCATAACATTTTTTTTTCTTTGCAATGTACTTTTAAAAATATTTTATGAAATCTTATCCATATGCGTTTATTTATTCTTTAATATGCTAAAGTTTGTAAGTAGTTGAATAAATTGGAACTATAATAGAAAGTGTGGTTTTTGAATGAGTGTTATGATGCATGCTTATATTATAAAATTGTTTTGTTTATTTATTTATTTATTTATTATTTTTGGTTCAAACAATATTTAGGGGTGCAAAATATTTATTAAATAACTAAAACTCTAGAGTTTTGTCTCAAAATAAATAAATGAATAAACAAAACACAATAGATCAACTCAATAACGTATTCTTTTATTTAATGTATTTTGAAAAGATTATTAAAAACTAATTGATTAATTAAAATTTAAGAAAAATATTAATTTATATATCTAAATTTTGGAGTATGTATCAATTTAAATCTATAACTAATAATTATATCAATTTAAACCTTAAATTTTTAAGTGTATCAATTTACACTATCAATCACGTAATTATATTATACAATAAACATTGCGTGACTTGTAGTTTTATGAATTAAACTTCTAAATTTTCAGAAGTGAATTAATTTAGACTCTCAATTAAGTTTTTCTTTGAAAATTATTCTTTCATCAATTATAATCGTCAACTTAATTAATCTAATATTTGAAGAAATCTACATTCATATGAAAATTGAATATATAGACGATCTTCAAATGAGGTCCTAGTAAACTATTTTAATTGATTGACTTATAACAATTCAAAAATTCGTGTTCACGCCATATTTTTTGAATTAAGTCTAGATGAAGATGTAATTAGTGACAGCCAAAAATTTAAATAATTGCAACTCAAATGTTATCCATTAAGTGCATACATGACGTGTGGACAATATATAAATCCTCGTGTTAGTCTATATTGATTATATTTTTCAGTTATATATATAGTATAAAAAGTTGAAATATTTAAAATGATTTTGCCACGAAATGTTTCAAATATCAATACTCTACCAATCACAAGTCCTTAAGAAAAACTCATTAAGACAACAGTTAGTACAGCCACGAAAAGCAAAGCCTACAAAAATAACATAAAATGAGACATAAAAATATTAATGTGGCATAGTCATATTGAATAAATTTAGTTAGGTTGACACATCATTGTAACAATATTTAATAGATGTGCTTCATTCATATTCAAGTGTGAAAATACACTTAAAATACAATCAAAATCCGTTGAACTAAAAAAAGAAGAACAAGAAGAATAGGATATAAAATTAAACAATATTGTTGAAAATTTATCTATAAATGTCATATAACATGTTGGATAATTGAACCTTTAAAAACAAATGTGCTCGAAGCATTAAATACTCAAAATTGACCTAATTGCAGACTTTTTAAATCTCAAAATAAAATACACACCAAGTTTACACCTTGAAGCAAAATCAACCATATTATATTTATTGTATTACATTTTCGTTTACATGTCAACATTTTCACATTTTAATAAATTTGACATCGAGATTTCATTATATTGTTAAAAAAATTCATAAAATAGAAAAAAGAAGAATCAAAATGTCATTAACATAAATATGATATAAAAAATAGACATGCTATTGTTTAAAAATCATAAAATATCAATTAATCAATCTTCTTTTACAGATATTTGTTTGGAAAATAACAACTTTGATATCTTCGTCGACATCGACATTTTAAACTTTAGTTGTACTAAAAGCTTATTTAAAATCATTTTCTTTTGTGTATGTAAAAATATTTTTGTATGGGCTTAGAACGTCAATAAAATCATTTATAACATTTTTGTTACTAAAATAATTAAAATTCCATGCTTAGAATGAGCTAACAAAGTAACAATCCTCTATTTATTGCAATGGTTTGAAAAAGGAAACACATAGATATATATATACATTAGGTTAAAATACCATTTTGGTCCTAATACTCTGTAATTAGTCAAATTTTAATTCTTATACTTTTAAATGTCCTTAAAGTTAAATTTTATCGAAATTGATTAAATGACCACAATAATTTTCATGCAAAGAAGTACAATACATTGGTACTTTTAAAATTTATAGATAAAATATTAATAAAAAATCTACAATAAATTAGTAGTAGAAAATAAATTTAAGATTTATTGAAAGTTGAGGGATTAAATTGAATGATATTTTAAAAAATATTATATTTTTGATGTGTTGTTTGAAATGTTATAATATTAAAAGGAGATAGAGGTGGATTGGTTAAAAATAATATTAAGAAATATAATTAAAAAAGAAAAAAGAAAAAAGAAAAGAGAAAAATATTGTAGGGTTTCCGACAAATAATACAATCCAATCAATGGACAAAGCAGAAGGATTTGGGATGACTTTAGCCGCTCTTCTGACTACTCCTCACTCTTTCTTTTTCCCTCTCTCTCTTTAATTCTACATTTCTCTATGTTCCATTATGACACCCCCAAATTTAGGAGCGTGAGAACCACGCGTCTTCTCAACCCAATATGCTACTTTCTACCGCATCTCACTTTTCATTTTTAAACTTACCTTATAAAATATTTTAATAATTTAGTATTTTCGACCATTCTTCTAACCCATTAGTCTCTATATTTTTTATTTTCTAATAATTTGATCCTTCTCACTTTCTAAATCGTAACAATTTAGTTTTTAAATTGTAACAATTTAGTCCATCGTGTAAAAAATTTTCTCAAAATTAGATGTTAACTTTGTAGTATATGTAAATATTGAGTCTATAAATTGTTTGTCGATTTATTTATAAAAAAAAAATCTCGTTAAATTTTAATACTAATTTCTACGATAGGGACTAAATCGTCACACAATTTTAAAATAGCAGGACTAAATTGTTACATGATAAAATTCAGGGACTAGATTGTTAAATATTGAAAGTATATGGATTAGATTGTTACAAACCAAAATTAACCGACTAAATTGCTAATTTTATTAGAGTTTGGGGACTAAAGTGATTTTTAACCAATTATGAAATATAGTTTTATTTTTATTTTAAAACAACAAGTTTTTATTTGTAGTGTTGTTGTCTTATTACTTATTTTTCTAACAAATATATTTTAATAAATGAAGCGAAATTTTGAAAGCGAAAAAGGGTAGTTTTTAAGTATATGTTTTTAGAGTGATTTAGAAAATTTATTACGTTTCTAAATTCGACTTAGTTTTTTAAATATGTTCATAAAAACGAAGAAAATGTTTTGAGAAAAAGCGGGAGAAACAAACGTAAATTTTTTTTTATAAAAAGAAAACAGAAAAGTAAAATCAAAATAATTATAAAACAAAACCTCAAATGTTTAAGAAAGAATTTTTGTTTCAAGTGTAAGAAAAAGTTGTATAAACATTAAAACAAATCATTCTAACAACCCATTCATGAAATTACAATAATTAGAGAACAAAATAAATAATTTGAAGAAACCTATAGTTTGATAATTTTTAAACAAACGAGCAAACATTCATGATTTAAACTCCTAACTTCTAAATCAAAAAATATATTAATGTAGATTATGCACTTTTTAAAGAAATTTAGGATTTAATACTTATTATTTTTAATTGAAATTTAGTCCTTAACAATATTTTAATATAGGCATTTACAAAATTTTTATCAAATTACAGAAACTACTAAAACTATATTTTAATTTTTTTTAAACCAGGTGACCTAAATTTGTAAATCTACCGGTATTTTATGTTAGTCTAATTTGAGTTATAATTTTTGCCAGAATTATTTTCAAATTTAATAAACCGAGTCAAAATATTTGTAAATGTAGAAAATTTTCATTTGTTTATCAACAATAGACTGTTATAGTCTATTGCGGTTCATCTTCGTTTATTATTTAGTGATAAAAATCTATTGTTATTTATCACTAATAAAACAGTGAAATTTTTTTTATATTTGTAAAATAGTTCTGTATTTTATCAATTTATAATATATTTTATTTATTTGGAAAAAAATTCTCCAAAGTGTTTCAACTCTTCTCCCTCTTATTTTCCTCCCTACAATTGTGAGTGTTATTATTGGAGAGAGAGAGAGATACAAACCCCACCTTCAGTTTCCCTCTCTAGGAAACATATTAAGAGAGAGAAAGAGAAAAAAAAGGGTTTGTAGTGAGAGAGAGAGAAAAGAAGGATTAATTTTTGAACTCAAAGAAGGAGAGAAGAAAGGGAAGGTGGAGAAGAAAGGAAGATGATAAAATGAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTCTAAAATTCTGTCTCCATAAACTCCACTTTCTTTTTCTTTCATCTGCTTCCATCAAAAAGCCAAAGTTTGTGACAGTAATCAGTCACCAACAGAAGCAGAAGCAGAAGCAGAAGAAGAAGCAGTAGTAGTAGCAGCAAAAGCAGAAGCAAAAATTATAAAAGCCCTCCAAGAAGAAGAACAACAACAACAACCAAATCCTAATTTTCTTCTTTTTATTTCTTTCATAAAAAAAAAAAGAAAAAAAAAAAAAAGAGAAAATCTCCCTCTTCTTCCCTCCCTTTTTCTGTCTACAAAATCTCTCTGCTAGAAATTCAGAGAGACCCCACTTCCCATATAACGCCTACATAGATTGAGTTTCCACGATCCAAAATCTTTTTCTCTTCAAACCCCAACCCAATATTTTTATTTTCTCCCCTCATTTTCCCATTTTTATTTATATATTTTTATATATATATTTTTTATTTATATATATGTAATTTTGTTTTTCCATATTTAACCCCATCCTCCGCCTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGCGCGTTCGCAGACTGGGCGGCTCCGTCTTCCTCCGCCGCCCGCGCTGCACCTGATGATCTCTCTCTCGGTTTCAATGCTGGTCCCTCCGCCGGACCACCTCCTGGACCACCCGTCTCCATGTGGTCCGCCGCCGCTCAGCGGTCTCTCAATTACGGACTTGGATCGGAGATGGGAATGGTCGGCCTTCGTGATGTATACGTCGTTGCTCCTGCGTCTACTTTCAACCCGAATCCTCACCCACACGACGCTAATCTCATGTCCGATCCTCATTCGCTTGCTGTCTCGAACCCCGCCACCGCTCTTGGTGTTGGAGTAGGCGTAGGGGTTATTCCGTTACTCACCGCCGGCCCCTGCCTTGGAGTTGAGGAGGACAATCTCTTGGGTAATCGGAGTAGTACCAGAGGTGGAGGGATTCAACTATGGCAGCAGAATCAACAATCGTCGCAACATTATTTGAAGAAAACGGCGTCGTCTTCTCTCGATCATCACCTCCATAATGCCTCCGCTACTAACAATGACTTGATCGGTGGGGGAATCGGCGGTTCCGGTGGTTTGGCTTCGTCGACATCGGCGACCACCACGTGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTGTAGCCATAGACGCTGCAGAACTTGCTGTCGGAGCCGAGGGTTCGATTGCGCTACTCACGTGAAGAGCACGTGGGTTCCTGCTGCGCGACGGAGGGAGCGGCAACTTATGGCCGTTACTGCTACCGCCGCCGCCGGCTCCTCGGGCTCCACCTCCGGCGCGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCATACTTCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAGTCATCAAGGCAAGAACAATTTCTCCGGAATTTAGGGTTTCTTTCTTCATTTTCGGTGTCTTTTCTTGAATTGTTTAATTATTTTAATTCAGATGCTGGATTTAAAGAAGCACTACCGAGCCAAGTACAAGCACGGGCAGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTACGCATACCAAGCGGTGGTGAAGATTGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTGGAAGCCGGAGATGGCTTTCCTAATGTATCGGAATTACACTTGGGCGACGGCGGTGGCGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTTCTCCGCTTGTCGATCCATCGGATGTTTACAATGCGGCCGCCTCGGGCGGCGGCGGCGTTCCGGGGTTTCTCGGTGGTTCAAATTATGGTAATCAAATTAGCTGATATATTTTATTCTGATTTTCTTAACGGTTTCAAGGTTCTTCCCCAAATCAACGGGAACCAAAGGATCTGCAACTGTGTAATCTCATCCGACTAACCAATCTTTCTTTAGAATCAATTTTATTTATGTCTCATCTGATTGTGTATATCCAAGTTCTTTCAACTCTGATCTTGCAACTTTTATCATTGACTGAGTCATTTAATCCATTCCCCATTTCATTAACCCATAATTTCAATTTTATTTTCTGTGGTTTCTGTTCTTGATTTCACTAATTCCAGCTGGGGTAAAAGGAAATGTTATGATGATTGCTATTACCTGCATGCTTCTTGCTTTTTACATTTTTCCTCTTATTCTTTTCTTGATTTACAAATCTTCTTCTCTAGGCTAAATCTACAGTATTTTGTTGATTATTTTAATATTAGATTCAGCTGATAATCATAGGGATGTGAGCCATCTTATCTCTTGTGTTCATATTTGTCTTGTGTGCGCTCACTGTTCACTCATGTGCCTAACAATTTCTTGTTTTTCAAAGCAAAATCCCATTTGAAATTATCTGCCTTTTTACTTTTTTCTTTTACTTGTTATAGTTTAATCAATGTCTCTTGGTGGGTATGGAAATATATTCCTAACCAGTTGGCATTTTTCTATTTGGTTGGTTTGGTATATAGTTTGGTTCTTTAGGGATAGTGTGTTAAAGTTTCATGAGAGCTGCAAATGCTGAATTTCATTGTGAGGTGCTGGATTTAGTCTTTTGTTTTAGAAAGGCTGCTGAGGTGTCACAATCATAAGCTCTTTGAGAAAATGAAAACATTGAAAATGATGGCTTTTTCCCCCTTCCACTGTTCCACTTCTTTTAGTCCACCAACATGTCATCTTCATTCTTGCTTCTGTTGTATTTTGTTGTGTCCAATTTTTATATATCCAATGAAATTGTTTGTTCTATATCTAACGGAACTTTATTGTCTATCTATTAATCTTTCCTTCCTCACTTTAAAATCTTAGGAGGCTCAGGGTGTTAAGTTTGTTACTATAGTTTGTATTTGAGGTGCAAACATTTTTAATATGACATTTTTTGTATTTGAAGTGCAAACTATTTTAATATGACGTTTTTTGAGTATGTATTTTCATTTTGTTTACTTGTTTACAACTCATTCCGAATATATCTCACTAGTTTTATTGTTTAAATAAGTTTGCATCTGGGTTGTTTTAATCGGTCCTTTACTTCATTGCTGATCAACCTGTAAGATTTTAAATTATTGCCCTTATCATTTCACGTATATATTAAAGACACTATGTTGGATTTTCATTGTTGACATTTTCGCGTCTATTTTGTCTGTTGTTAATAGGGCAACAGTCCTTTGAAATGCTGAGTAAGCCTTTTTGTTTTTAAAATAAAACAAAAAAATCCATTGTTGTATGTCATTCTTGACCTAATTCATATTTTATTCTAAAGTGGCTTTTGCATTGAATGCTTGCATTTTGCTTGTTATAAATGCAAAGGAGTAGATAGATTTTCTCCTTGGATTTCTTCATAAGTACTTAGAAATTGTTGGTACCTTTTGGAACAATCTTTACATTTCTCAGATCTGCACATTCAGATTGTTCTGTCTGTTTTTGAGCATACAGATGCTGCCAGCTTATAAGGCATTTAGGAAGCTTAATTATCAAAGCTCCTAAAGCAAAGATAAGTATACGGATACAATTATTAATTTAATGTTTTGTTGTTTTATTTTATTTTTTTCCATTTGTTTTTTATTTGGTGTTATCGGAAGCTGAGGATTAATTATTTTATTGATTAGTTCCACCTGTGATTTCTTTATTTTTCGTATATGCATAAAATAGTGGAATTATTTTCCTAAATTTCTGGTTTCAACCTTTGATTATTGCTGGTGCCTGATTGGATATAATACAGCCATGGGATAAAGCATTTCCTTATACGACCTTATATTGCTTGTGTAGACTCATGTATTTTCCTTTTATCTTTACATTTTTATTTTAATTTTGTTGGGTAATTATTAGCTTCTTGCTTTCGTTTATTGTTGTATTCCGTGTTTCCCAGTTTAGCTTGTCTGAATATTTCACCTACTCAATGACTAGATCGGACAGTAAGCCTATTTTTATATATTAGTGCTTGTTTTCTTCTTCTCTTTCACATTTTCTCCTGAATCTAGAGAGCCAGGCAGTTTCATATCATTCTTATATTACAATATGTTTCTCATCTTTTTACTAACAATTTGAATGGACATCGTTATATGCTCTAGTAATGTGAATGCTCTCTCTTGCTTGTCGAACGTAAATTTCAGCACATCTAATATTTCTATCGATTGTGTTAGTGTTATTTTGCAAAAATAGCTGTCGATTTGTTTGGAGATGATGCAAAAACTGGATGGAAATGATCTCTTTCATCTTAGATTTGGTTTGTATGATTTTAGATATTGTTTATGAAGCGAAGAAGATGAATGCCATGTAAGCTAAGTTCTCTAGGATTTGTTATAAACTTTTGTGATTTGTCAATCCAATGCTCGTGTTTTGTGTTATTTTATGTATATTCTGAGATCTTCTGTCATGTTTGTAGTGGAAGAATTAGGTTTTTATTTGTCTTTCCTTCAAGTGGTTGGGTGGACTGCTTGGATTTTGATTTAGAAAAATTCTTTTCCTCTTGGGATCAGCTTTGTGAATGGCTTTAAAAAGAAGAAAAAAAGTACCCATCTTCACTTCTCAGTTCTTTCTTCAATTTTACATTTTTGGTTGCCTCTATTTTGAGTGCAAAATTGACTGACTCCTTGCTAAGCCTGTGTTTCCAAAATAAACTAAAGAATCTTTTGTATTATTATAATCCACTTTCTACATATAGGGTTTTAGGGTTTTAATTGTGTAGACTAATAGAATCTTTTTCAATTTTGATGATGTGAAAATAATGGGTCGGTGTTTCTGACTTTTGATTGTGTTAAAGACATGCATAAACTAATAATTTTATTTTTGAGAGTGGAAGCCACTTTAATAAGATAATCAAAGATTAGAATCTATATTTTCTGTGAGAATATGGGTTTTAAGGATTCGTGTGCACAATCAATGGTTGATGTTGCATCTAAATGTGAATGGACTTGTTGCTACTTTGGTTTTGTGTCCAATCGAACTTTCTTTAAATTCTTCTAAAGGTTGATTTCATTATTTAATATTCGGTTTAGTATTCATTTGGTTCTCTAAATAAAAAAGAGTTAAATTTGTAGGTACTTTTGTTTATTGGTTTTAGTGTTTCGTTGCTTATTTTTATGAGTGTTTTTTAAGAAAAAAGATAATTTCATAATACTAAATAAGGTTATCTTTAATGACTTCGTTTTGTCAATGAAATTTGGCTGAAGTATCAATGAAAATATTTAATAAAAAATGATTTGAATAATGTGTTTGTTTCTCATAATTTTCTTTACTGATGATTTTCATCTTTTATGTTAATGTTTGTACTAATAGCCAAATCTTTTAAACAAAAATGAGACACTGAGCTAATTTTAAGGCAATCCTATTGTTTTTTTTGTTTATTTGTTTATTGGTTTTTTGTATTTGAAAATTAAGTTTATTTTTCTCCCTTTTTTTAAAGAGAATTGGAAATCCTAGCCAAATTCTAAAAATCTTGTCTTGGTTTTTGTAAACATCGGTAAAAAGTAAATAACAAAGCAAAAGATTTAGGTATATATTCTTAATTTTTAAAAACCAAATAGATATGGGATTTCAGTTTTTGAAAACTTGTATTTTGTTTTTAAAATTCGATTAAATATTCAAAAGTTTATCTTAAGGGATAGAAAACCATGATGAAGAAATAGTGAAGAAGAAGATTTATAAACGAAATTGTATGATGTGAAGCTAAGCCTAAGGCGAAATAATACTATTCTTTGGTAAACCTATACATTCCTCGAAAATACATTTGAATTTTAATTAAAATTAAATCAAAATCTACTTTTGAAAAATATTTGAAATAAATAGACTATAAAGAAAGGAAAAACAGGTGGGACACTAAGAGTAGTGAGGCAAACCTACTGACTTCAACATAGTTCAAAAATTGTGTTATTTTTCTATTTTTAAACGAAAAGGAAAATTTAAAACCATTAAATTATTTTTAATTATTTTATATAAATATAAAATAATTAAAAATAATTTATAAAGATTATTGTACTATATTTTGGTATTATATTATTAGTTATAAATATTTCAGCAATTTCGGTTAAGATAATTTTCCTATTTTATAGAGCATTATTCAATTGGGAGTAGAAGAAGTAAAGAAAACGTTAAACTACAAATCGATACGGATGGTGGTTTTACTTTCTACGTGAAGTTTTTCTCCCTTCCTCCACCATCTTCATTTCTTCGATTCTGTAATCTTCTCTTCAGATCGACTCCTCGTCGTCGTCGTCGATGAGTCGATCGCGGTTCATTCGGTTTCAATTTCGCCGGAAACCACCGCCTGGTTGTCATTTCGATCGCGAACATTAACGCTATCGAGCTCTCCCGCGAGCGGCGAGGTTTTCAGGTACGCTGCTCGCGTTTACATTAGCCATTAA

mRNA sequence

ATGAGAAGTGAGAATAAAGGGGAGAAAGTACTTGGTGAAGTGGAAGATTCGTGGCCCCAAAGCCAAGCCAAAGGGCCAAAAGGTGCGGCTAAGGCCATTAGAGCTTTTCAGCTTTCTCTTTCACGTCCTCCGACAATCCTTATTTACACTCTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGCGCGTTCGCAGACTGGGCGGCTCCGTCTTCCTCCGCCGCCCGCGCTGCACCTGATGATCTCTCTCTCGGTTTCAATGCTGGTCCCTCCGCCGGACCACCTCCTGGACCACCCGTCTCCATGTGGTCCGCCGCCGCTCAGCGGTCTCTCAATTACGGACTTGGATCGGAGATGGGAATGGTCGGCCTTCGTGATGTATACGTCGTTGCTCCTGCGTCTACTTTCAACCCGAATCCTCACCCACACGACGCTAATCTCATGTCCGATCCTCATTCGCTTGCTGTCTCGAACCCCGCCACCGCTCTTGGTGTTGGAGTAGGCGTAGGGGTTATTCCGTTACTCACCGCCGGCCCCTGCCTTGGAGTTGAGGAGGACAATCTCTTGGGTAATCGGAGTAGTACCAGAGGTGGAGGGATTCAACTATGGCAGCAGAATCAACAATCGTCGCAACATTATTTGAAGAAAACGGCGTCGTCTTCTCTCGATCATCACCTCCATAATGCCTCCGCTACTAACAATGACTTGATCGGTGGGGGAATCGGCGGTTCCGGTGGTTTGGCTTCGTCGACATCGGCGACCACCACGTGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTGTAGCCATAGACGCTGCAGAACTTGCTGTCGGAGCCGAGGGTTCGATTGCGCTACTCACGTGAAGAGCACGTGGGTTCCTGCTGCGCGACGGAGGGAGCGGCAACTTATGGCCGTTACTGCTACCGCCGCCGCCGGCTCCTCGGGCTCCACCTCCGGCGCGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCATACTTCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAATGCTGGATTTAAAGAAGCACTACCGAGCCAAGTACAAGCACGGGCAGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTACGCATACCAAGCGGTGGTGAAGATTGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTGGAAGCCGGAGATGGCTTTCCTAATGTATCGGAATTACACTTGGGCGACGGCGGTGGCGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTTCTCCGCTTGTCGATCCATCGGATGTTTACAATGCGGCCGCCTCGGGCGGCGGCGGCGTTCCGGGGTTTCTCGGTGGTTCAAATTATGATCGACTCCTCGTCGTCGTCGTCGATGAGTCGATCGCGGTTCATTCGGTTTCAATTTCGCCGGAAACCACCGCCTGGTTGTCATTTCGATCGCGAACATTAACGCTATCGAGCTCTCCCGCGAGCGGCGAGGTTTTCAGGTACGCTGCTCGCGTTTACATTAGCCATTAA

Coding sequence (CDS)

ATGAGAAGTGAGAATAAAGGGGAGAAAGTACTTGGTGAAGTGGAAGATTCGTGGCCCCAAAGCCAAGCCAAAGGGCCAAAAGGTGCGGCTAAGGCCATTAGAGCTTTTCAGCTTTCTCTTTCACGTCCTCCGACAATCCTTATTTACACTCTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGCGCGTTCGCAGACTGGGCGGCTCCGTCTTCCTCCGCCGCCCGCGCTGCACCTGATGATCTCTCTCTCGGTTTCAATGCTGGTCCCTCCGCCGGACCACCTCCTGGACCACCCGTCTCCATGTGGTCCGCCGCCGCTCAGCGGTCTCTCAATTACGGACTTGGATCGGAGATGGGAATGGTCGGCCTTCGTGATGTATACGTCGTTGCTCCTGCGTCTACTTTCAACCCGAATCCTCACCCACACGACGCTAATCTCATGTCCGATCCTCATTCGCTTGCTGTCTCGAACCCCGCCACCGCTCTTGGTGTTGGAGTAGGCGTAGGGGTTATTCCGTTACTCACCGCCGGCCCCTGCCTTGGAGTTGAGGAGGACAATCTCTTGGGTAATCGGAGTAGTACCAGAGGTGGAGGGATTCAACTATGGCAGCAGAATCAACAATCGTCGCAACATTATTTGAAGAAAACGGCGTCGTCTTCTCTCGATCATCACCTCCATAATGCCTCCGCTACTAACAATGACTTGATCGGTGGGGGAATCGGCGGTTCCGGTGGTTTGGCTTCGTCGACATCGGCGACCACCACGTGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTGTAGCCATAGACGCTGCAGAACTTGCTGTCGGAGCCGAGGGTTCGATTGCGCTACTCACGTGAAGAGCACGTGGGTTCCTGCTGCGCGACGGAGGGAGCGGCAACTTATGGCCGTTACTGCTACCGCCGCCGCCGGCTCCTCGGGCTCCACCTCCGGCGCGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCATACTTCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAATGCTGGATTTAAAGAAGCACTACCGAGCCAAGTACAAGCACGGGCAGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTACGCATACCAAGCGGTGGTGAAGATTGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTGGAAGCCGGAGATGGCTTTCCTAATGTATCGGAATTACACTTGGGCGACGGCGGTGGCGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTTCTCCGCTTGTCGATCCATCGGATGTTTACAATGCGGCCGCCTCGGGCGGCGGCGGCGTTCCGGGGTTTCTCGGTGGTTCAAATTATGATCGACTCCTCGTCGTCGTCGTCGATGAGTCGATCGCGGTTCATTCGGTTTCAATTTCGCCGGAAACCACCGCCTGGTTGTCATTTCGATCGCGAACATTAACGCTATCGAGCTCTCCCGCGAGCGGCGAGGTTTTCAGGTACGCTGCTCGCGTTTACATTAGCCATTAA

Protein sequence

MRSENKGEKVLGEVEDSWPQSQAKGPKGAAKAIRAFQLSLSRPPTILIYTLVATTRRLPSDSGAFADWAAPSSSAARAAPDDLSLGFNAGPSAGPPPGPPVSMWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLGGSNYDRLLVVVVDESIAVHSVSISPETTAWLSFRSRTLTLSSSPASGEVFRYAARVYISH

Homology

[Close]

BLAST of CcUC02G040570.1 vs. NCBI nr
Match: KAG6570417.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 712.6 bits (1838), Expect = 2.5e-201
Identity = 376/439 (85.65%), Postives = 397/439 (90.43%), Query Frame = 0


Query: 51  LVATTRRLPSDSGAFADWAAPSSSAARAAPDDLSLGFNAGPSAGPPPGPPVSMWS--AAA 110
           LVATTRRLPSDSGAFADWAAPSSSA RA PDDLSLGFNA P+  PP GPP  MWS  AAA
Sbjct: 7   LVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPMWSAAAAA 66

Query: 111 QRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGV 170
           QRSLNYGLGSEMGMVGLRDVYVVAPA++FNPNPH HD NL+SD HSLAVSN ATALGVGV
Sbjct: 67  QRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNSATALGVGV 126

Query: 171 GVGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLH 230
           GVGVIPLLTAGPCLGVEEDNLL +RS +RGGGIQLWQQNQQS+QHYLKKT SSSLDHHLH
Sbjct: 127 GVGVIPLLTAGPCLGVEEDNLLASRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLH 186

Query: 231 NASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATH 290
           NAS T NDLIGGGIG  GGLASS+SATTTCQDCGNQAKKDCS  RCRTCCRSRGFDCATH
Sbjct: 187 NASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATH 246

Query: 291 VKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLD 350
           VKSTWVPAARRRERQLMA+T TAA GSSGS SG KKPRLIASQTTSHTSTSNTTPP S+D
Sbjct: 247 VKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSID 306

Query: 351 TSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 410
           TSS   +AGFKE LP Q++A AVFKCVRVTAVDDG+DEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 307 TSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 366

Query: 411 VEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLGGSNY 470
           VEAGDGFPNVSEL+L DGGGG RNNRNGSSS+P VDPSDVYNAAASG GG PGFLGGSNY
Sbjct: 367 VEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNY 426

Query: 471 DRLLVVVVDESIAVHSVSI 485
           DR+L VVV+++IA H VS+
Sbjct: 427 DRVL-VVVEQTIAAHFVSV 443

[Close]

BLAST of CcUC02G040570.1 vs. NCBI nr
Match: XP_023512287.1 (protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 704.5 bits (1817), Expect = 6.7e-199
Identity = 366/421 (86.94%), Postives = 384/421 (91.21%), Query Frame = 0


Query: 50  TLVATTRRLPSDSGAFADWAAPSSSAARAAPDDLSLGFNAGPSAGPPPGPPVSMWS--AA 109
           ++VATTRRLPSDSGAFADWAAPSSSA RA PDDLSLGFNA P+  PP GPP  +WS  AA
Sbjct: 4   SVVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPLWSAAAA 63

Query: 110 AQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVG 169
           AQRSLNYGLGSEMGMVGLRDVYVVAPA++FNPNPH HD NL+SD HSLA SN ATALGVG
Sbjct: 64  AQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNSATALGVG 123

Query: 170 VGVGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHL 229
           VGVGVIPLLTAGPCLGVEEDNLLG+RS +RGGGIQLWQQNQQS+QHYLKKT SSSLDHHL
Sbjct: 124 VGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHL 183

Query: 230 HNASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCAT 289
           HNAS TNNDLIGGGIG  GGLASS+SATTTCQDCGNQAKKDCS  RCRTCCRSRGFDCAT
Sbjct: 184 HNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCAT 243

Query: 290 HVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSL 349
           HVKSTWVPAARRRERQLMA+T TAA GSSGS SG KKPRLIASQTTSHTSTSNTTPP S+
Sbjct: 244 HVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSI 303

Query: 350 DTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQ 409
           DTSS   +AGFKE LP Q++A AVFKCVRVTAVDDG+DEYAYQAVVKIGGHVFKGFLYDQ
Sbjct: 304 DTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQ 363

Query: 410 GVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLGGSN 466
           GVEAGDGFPNVSELHL DGGGGSRNNRNGSSS+P VDPSDVYNAAASG GG PGFLGGSN
Sbjct: 364 GVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSN 423

[Close]

BLAST of CcUC02G040570.1 vs. NCBI nr
Match: KAA0061772.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa] >TYJ96114.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 692.2 bits (1785), Expect = 3.5e-195
Identity = 371/422 (87.91%), Postives = 386/422 (91.47%), Query Frame = 0


Query: 51  LVATTRRLPSDSGAFADWAAPSSSAARAA-PDDLSLGFNAGPSAGPPPGPPVSMWSAAAQ 110
           +VATTRRLPSDSGAFADWAAP+SSAARAA PDDLSLGFNA PSA PPPGPPVSMWSAAAQ
Sbjct: 2   VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQ 61

Query: 111 RSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVG 170
           RSLNYGLGSEMGMVGLRDVYVVAPAS+FN NPH HD NL+SDPHSLAVSNPATALGVGVG
Sbjct: 62  RSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVG 121

Query: 171 VGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHN 230
           VGVIPLLTAGPC+GVEE+NL GNRSS RGGGIQ     QQS+QHYLKKT S SLDH    
Sbjct: 122 VGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGSLDH---- 181

Query: 231 ASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV 290
            S TNN+LIGGGIGGSGGLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV
Sbjct: 182 VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV 241

Query: 291 KSTWVPAARRRERQLMAVTATAAA-GSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLD 350
           KSTWVPAARRRERQLMAVTATAAA GSS STSGAKKPRLI SQTTSHTSTSNTTPPRSLD
Sbjct: 242 KSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLD 301

Query: 351 TSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 410
           TSS   + G KEALP Q++A+AVFKCVRVTAVDDGDDEYAY A+VKIGGHVFKGFLYDQG
Sbjct: 302 TSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQG 361

Query: 411 VEAGDGFPNVSELHLGD--GGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLGGS 466
           VEAGDGFPNVSELHLGD  GGGG+ NNRNGSSSSPLVDPSDVYN AASG GGVPGFLGGS
Sbjct: 362 VEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGS 415

[Close]

BLAST of CcUC02G040570.1 vs. NCBI nr
Match: XP_038902210.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Benincasa hispida])

HSP 1 Score: 651.4 bits (1679), Expect = 6.8e-183
Identity = 338/367 (92.10%), Postives = 347/367 (94.55%), Query Frame = 0


Query: 103 MWS-AAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPA 162
           MWS AAAQRSLNYGLGSEMGMVGLRDVYVVAPAS+FNPNPH HDANLMSDPHSLAVSNPA
Sbjct: 1   MWSAAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNPNPHQHDANLMSDPHSLAVSNPA 60

Query: 163 TALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASS 222
           TALGVGVGVGVIPLLTAGPCLGVEE+NLL NRSS+RGGGIQLWQQNQQS+QHYLKKT S+
Sbjct: 61  TALGVGVGVGVIPLLTAGPCLGVEEENLLSNRSSSRGGGIQLWQQNQQSTQHYLKKTPSA 120

Query: 223 SLDHHLHNASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSR 282
           SLDHHLHNAS  NNDLIGGGIG SGGLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSR
Sbjct: 121 SLDHHLHNASGANNDLIGGGIGVSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSR 180

Query: 283 GFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNT 342
           GFDCATHVKSTWVPAARRRERQLM VTAT AAGSSGSTSGAKKPRLIASQTTSHTSTSNT
Sbjct: 181 GFDCATHVKSTWVPAARRRERQLMTVTATFAAGSSGSTSGAKKPRLIASQTTSHTSTSNT 240

Query: 343 TPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFK 402
           TPPRSLDTSS   +AGFKE LP QV+A AVFKCVRVTAV+DGDDEYAYQAVVKIGGHVFK
Sbjct: 241 TPPRSLDTSSSHQDAGFKETLPGQVRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFK 300

Query: 403 GFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPG 462
           G LYDQGVEAGD FPNVSELHLGDGG G RNNRNGSSSSPLVDPSDVYNAAASGGGGVPG
Sbjct: 301 GLLYDQGVEAGDAFPNVSELHLGDGGSGGRNNRNGSSSSPLVDPSDVYNAAASGGGGVPG 360

Query: 463 FLGGSNY 466
           FLGG NY
Sbjct: 361 FLGGPNY 367

[Close]

BLAST of CcUC02G040570.1 vs. NCBI nr
Match: KAG6605936.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 647.1 bits (1668), Expect = 1.3e-181
Identity = 353/416 (84.86%), Postives = 366/416 (87.98%), Query Frame = 0


Query: 56  RRLPSDSGAFADWAAPSSSAARAAPDDLSLGFNAGPSAGPPPGPPVSMWSAAA--QRSLN 115
           +RLPSDSGAFADWAA SSSAAR+APDDLSLGFNAGP+  PP  P  SMWSAAA  QRSLN
Sbjct: 6   QRLPSDSGAFADWAASSSSAARSAPDDLSLGFNAGPTPPPPVVPSASMWSAAAASQRSLN 65

Query: 116 YGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVI 175
           YGLGSEM MVGLRDV+VVAPAS+FNPNPH HD NL+SDPHSLAVSN ATAL    GVGVI
Sbjct: 66  YGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLAVSNSATAL----GVGVI 125

Query: 176 PLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASAT 235
           PLLTAGPCLGVEEDNLL NRSS RGGGIQLWQQN     HYLKK   SSLDHHLHN SA 
Sbjct: 126 PLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQN-----HYLKK-MPSSLDHHLHNPSAA 185

Query: 236 NNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTW 295
           NN LI  GIG +GGLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDC THVKSTW
Sbjct: 186 NNGLIDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCTTHVKSTW 245

Query: 296 VPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLDTSS-- 355
           VPAARRRERQLM VTA AAAGSS STSGAKKPRLIASQTTS TSTSNTTPPRSLDTSS  
Sbjct: 246 VPAARRRERQLMGVTANAAAGSSASTSGAKKPRLIASQTTSRTSTSNTTPPRSLDTSSSH 305

Query: 356 -NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEAGD 415
            +AGF EALP QV+A AVFKCVRVTAVDDGDDEYAYQAVVKIGGH+FKGFLYDQGVE GD
Sbjct: 306 QDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIFKGFLYDQGVEPGD 365

Query: 416 GFPNVSELHLGDGGGGSRNNRNG-SSSSPLVDPSDVYNAAASGGGGVPGFLGGSNY 466
            FPNVSELHLGDGGG +RNNRNG SSSSPLVDPSDVYNAAA+GGGG P FLGGSNY
Sbjct: 366 EFPNVSELHLGDGGGITRNNRNGVSSSSPLVDPSDVYNAAATGGGGAPCFLGGSNY 411

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.0e-78
Identity = 191/351 (54.42%), Postives = 226/351 (64.39%), Query Frame = 0


Query: 120 MGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAG 179
           MGMVGLRDV++VAPA       H  +A ++S    +   N   A    +GVGVIPLLTAG
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDHM---NSNAAAAAALGVGVIPLLTAG 60

Query: 180 -PCLGVEED--NLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNND 239
            P   VE+   N LGN         + WQ N  + +             +LH  S TN  
Sbjct: 61  TPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS-TNQT 120

Query: 240 LIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPA 299
            +G     SG   S  S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TVGTSSNNSGS-GSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 300 ARRRERQLMAVTATAAAGSSGST-SGAKKPRLIAS------QTTSHTSTSNTTPPRSLDT 359
           ARRRERQ+M   A   AGSS ST SG KKPR++ S      Q TSHTSTSN TPP+S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 240

Query: 360 SSN----AGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 419
           SS+     G +EA P QV+A AVFKCVRVTAV+DGDDEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 241 SSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG 300

Query: 420 VEAGDGFPNVSELHLGDGGGGSRNNRNG-SSSSPLVDPSDVYNAAASGGGG 456
           +E  +GFP++S+LHL    GGS NN NG S+S+P++DP +V      G GG
Sbjct: 301 LEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.0e-37
Identity = 108/256 (42.19%), Postives = 139/256 (54.30%), Query Frame = 0


Query: 207 NQQSSQHYLKKTASSSLDHHLHNASATNNDLI-GGGIGGSGGLASSTSATTTCQDCGNQA 266
           N  SSQ   +      L HH  +    + DL  G  I  S    SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 267 KKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGA--- 326
           KKDC+H RCRTCC+SRGFDC+THV+STW+P ARRRERQ     +T+  G    + GA   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 327 --KKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGFKEALPSQVQARAVFKCVRVTAVDD- 386
               P+     T   TS+S+  P  S         + + P +V + A+F+CV+++ VDD 
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG---EASFPGEVSSDALFRCVKMSGVDDG 221

Query: 387 GDDEYAYQAVVKIGGHVFKGFLYDQGVEA-----GDGFPNVSELHLGDGGGGSRNN---- 444
           GD +YAYQ  V IGGH+FKG LYDQG E+     G G  +      G GGGG   N    
Sbjct: 222 GDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNPPVV 281

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 6.4e-35
Identity = 97/228 (42.54%), Postives = 127/228 (55.70%), Query Frame = 0


Query: 239 GGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAAR 298
           GG  GGSGG+        +CQDCGNQAKKDCSH RCRTCC+SRGF+C+THV+STWVPAA+
Sbjct: 133 GGSGGGSGGV--------SCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAK 192

Query: 299 RRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGFKEA 358
           RRERQ    T           S  K+ R     T+S    +       L+  +       
Sbjct: 193 RRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGN------- 252

Query: 359 LPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYD--QGVEAGDGFPNVS 418
            P++V + AVF+CVRV++V+DG++E+AYQ  V IGGH+FKG LYD   G   G G+  V+
Sbjct: 253 FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNVVA 312

Query: 419 ELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLGGSN 465
                 GGGG++          L+    V  A AS      G +G S+
Sbjct: 313 AGESSSGGGGAQQLN-------LITAGSVTVATASSSTPNLGGIGSSS 338

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-33
Identity = 104/254 (40.94%), Postives = 138/254 (54.33%), Query Frame = 0


Query: 203 LWQQNQQSSQHYLKKTASSSLDHHLHNASATNNDLIGGGIGGSGGLAS-STSATTTCQDC 262
           ++QQ QQ  Q     T+++ L         +N  LI    G    + S S S   +CQDC
Sbjct: 69  IFQQQQQQQQRLDLYTSAAGL-----GVGPSNRSLIETSGGALMMMRSGSGSGGPSCQDC 128

Query: 263 GNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSG 322
           GNQ+KKDCSH RCRTCC+SRG DC THVKSTWVPAA+RRERQ    T        GS   
Sbjct: 129 GNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGSVPK 188

Query: 323 AKKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGFKEALPSQVQARAVFKCVRVTAVDDGD 382
            ++ R+ A      TS + T  P +  +    G     P +V + AVF+CVRV++VDD +
Sbjct: 189 RQRERIPARS----TSMAYTRIPSNNTSGLEVG---NFPPEVSSSAVFRCVRVSSVDDEE 248

Query: 383 DEYAYQAVVKIGGHVFKGFLYDQG----VEAGDGFPNVSELHLGDGGGGSRNNRN----- 442
           +EYAY+  V IGGHVFKG LYDQG      +G G   ++ +  G     S  N +     
Sbjct: 249 EEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGV 308

Query: 443 -GSSSSPLVDPSDV 446
            GS+S   +DP+ +
Sbjct: 309 VGSTSDHYIDPASL 310

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-31
Identity = 105/272 (38.60%), Postives = 138/272 (50.74%), Query Frame = 0


Query: 205 QQNQQSSQHYLKKTASSSLDHHLHNASATNNDLIGGGI-------GGSGGLASSTSATTT 264
           QQ QQ  QH        S       +S+ NN+     +          GG   +      
Sbjct: 65  QQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTRQGGMN 124

Query: 265 CQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSG 324
           CQDCGNQAKKDC H RCRTCC+SRGF C THVKSTWVPAA+RRER     +    + SS 
Sbjct: 125 CQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSR 184

Query: 325 STSGAKKPRLIA------SQTTSHTSTSNTTPPRSLDTSSNAGFK--EALPSQVQARAVF 384
            T  AK+ R  +       +  S    S     R ++ +SN+G +  + LP +V + A+F
Sbjct: 185 ETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNSPAIF 244

Query: 385 KCVRVTAVDDGDDE--YAYQAVVKIGGHVFKGFLYDQGVEAGDGF-----------PNVS 444
           +CVRV+++++ +D+  YAYQ  V IGGH+FKG LYDQG E  D              NV 
Sbjct: 245 RCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATTTNVE 304

Query: 445 ELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNA 449
           E       G   NN NG     ++DPS +Y A
Sbjct: 305 ETATKTVTG---NNNNGL----MLDPSSLYPA 329

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy TrEMBL
Match: A0A5A7V0Q8 (Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00770 PE=3 SV=1)

HSP 1 Score: 692.2 bits (1785), Expect = 1.7e-195
Identity = 371/422 (87.91%), Postives = 386/422 (91.47%), Query Frame = 0


Query: 51  LVATTRRLPSDSGAFADWAAPSSSAARAA-PDDLSLGFNAGPSAGPPPGPPVSMWSAAAQ 110
           +VATTRRLPSDSGAFADWAAP+SSAARAA PDDLSLGFNA PSA PPPGPPVSMWSAAAQ
Sbjct: 2   VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQ 61

Query: 111 RSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVG 170
           RSLNYGLGSEMGMVGLRDVYVVAPAS+FN NPH HD NL+SDPHSLAVSNPATALGVGVG
Sbjct: 62  RSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVG 121

Query: 171 VGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHN 230
           VGVIPLLTAGPC+GVEE+NL GNRSS RGGGIQ     QQS+QHYLKKT S SLDH    
Sbjct: 122 VGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGSLDH---- 181

Query: 231 ASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV 290
            S TNN+LIGGGIGGSGGLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV
Sbjct: 182 VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV 241

Query: 291 KSTWVPAARRRERQLMAVTATAAA-GSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLD 350
           KSTWVPAARRRERQLMAVTATAAA GSS STSGAKKPRLI SQTTSHTSTSNTTPPRSLD
Sbjct: 242 KSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLD 301

Query: 351 TSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 410
           TSS   + G KEALP Q++A+AVFKCVRVTAVDDGDDEYAY A+VKIGGHVFKGFLYDQG
Sbjct: 302 TSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQG 361

Query: 411 VEAGDGFPNVSELHLGD--GGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLGGS 466
           VEAGDGFPNVSELHLGD  GGGG+ NNRNGSSSSPLVDPSDVYN AASG GGVPGFLGGS
Sbjct: 362 VEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGS 415

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy TrEMBL
Match: A0A6J1FY67 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448991 PE=3 SV=1)

HSP 1 Score: 624.0 bits (1608), Expect = 5.6e-175
Identity = 324/368 (88.04%), Postives = 339/368 (92.12%), Query Frame = 0


Query: 103 MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNP 162
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA++FNPNPH HD NL+SD HSLAVSN 
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 163 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTAS 222
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLG+RS +RGGGIQLWQQN QS+QHYLKKT S
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120

Query: 223 SSLDHHLHNASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRS 282
           SSLDHHLHNAS TNNDLIGGGIG  GGLASS+SATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 283 RGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSN 342
           RGFDCATHVKSTWVPAARRRERQLMA+T TAA GSSGS SG KKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 343 TTPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVF 402
           TTPP S+DTSS   +AGFKE LP Q++A AVFKCVRVTAVDDG+DEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 403 KGFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVP 462
           KGFLYDQGVEAGDGFPNVSEL+L DGGGGSRNNRNGSSS+P VDPSDVYNAAASG GG P
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 463 GFLGGSNY 466
           GFLGGSNY
Sbjct: 361 GFLGGSNY 368

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy TrEMBL
Match: A0A6J1JCY6 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC111484595 PE=3 SV=1)

HSP 1 Score: 613.2 bits (1580), Expect = 9.9e-172
Identity = 322/368 (87.50%), Postives = 337/368 (91.58%), Query Frame = 0


Query: 103 MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNP 162
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA++FNPNPH HD NL+SD HSLAVSN 
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 163 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTAS 222
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLG+RS +RGGGIQLWQQNQQS+QHYLKKT S
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 223 SSLDHHLHNASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRS 282
           SSLDHHLHNAS T NDLIGGGIG  GGLASS+SATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 283 RGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSN 342
           RGFDCATHVKSTWVPAARRRERQLMA+T TAA GSSGS SG KKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 343 TTPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVF 402
           TTPP S+DTSS   +AGFKE LP Q++A AVFKCVRVTAVDDG+DEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 403 KGFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVP 462
           KGFLYDQGV+AGDGFPNVSELHL DGGGGSRNNRNG SS+P VDPSDVYN AASG GG P
Sbjct: 301 KGFLYDQGVDAGDGFPNVSELHLSDGGGGSRNNRNG-SSAPFVDPSDVYNVAASGNGGAP 360

Query: 463 GFLGGSNY 466
           GFLGGSNY
Sbjct: 361 GFLGGSNY 366

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy TrEMBL
Match: A0A1S3BMJ0 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 7.1e-170
Identity = 323/369 (87.53%), Postives = 336/369 (91.06%), Query Frame = 0


Query: 103 MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPAT 162
           MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPAS+FN NPH HD NL+SDPHSLAVSNPAT
Sbjct: 1   MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPAT 60

Query: 163 ALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSS 222
           ALGVGVGVGVIPLLTAGPC+GVEE+NL GNRSS RGGGIQ     QQS+QHYLKKT S S
Sbjct: 61  ALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGS 120

Query: 223 LDHHLHNASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRG 282
           LDH     S TNN+LIGGGIGGSGGLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRG
Sbjct: 121 LDH----VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRG 180

Query: 283 FDCATHVKSTWVPAARRRERQLMAVTATAAA-GSSGSTSGAKKPRLIASQTTSHTSTSNT 342
           FDCATHVKSTWVPAARRRERQLMAVTATAAA GSS STSGAKKPRLI SQTTSHTSTSNT
Sbjct: 181 FDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNT 240

Query: 343 TPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFK 402
           TPPRSLDTSS   + G KEALP Q++A+AVFKCVRVTAVDDGDDEYAY A+VKIGGHVFK
Sbjct: 241 TPPRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFK 300

Query: 403 GFLYDQGVEAGDGFPNVSELHLGD--GGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGV 462
           GFLYDQGVEAGDGFPNVSELHLGD  GGGG+ NNRNGSSSSPLVDPSDVYN AASG GGV
Sbjct: 301 GFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGV 360

Query: 463 PGFLGGSNY 466
           PGFLGGSNY
Sbjct: 361 PGFLGGSNY 361

[Close]

BLAST of CcUC02G040570.1 vs. ExPASy TrEMBL
Match: A0A1S3BN66 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 7.1e-170
Identity = 323/369 (87.53%), Postives = 336/369 (91.06%), Query Frame = 0


Query: 103 MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPAT 162
           MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPAS+FN NPH HD NL+SDPHSLAVSNPAT
Sbjct: 1   MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPAT 60

Query: 163 ALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSS 222
           ALGVGVGVGVIPLLTAGPC+GVEE+NL GNRSS RGGGIQ     QQS+QHYLKKT S S
Sbjct: 61  ALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGS 120

Query: 223 LDHHLHNASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRG 282
           LDH     S TNN+LIGGGIGGSGGLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRG
Sbjct: 121 LDH----VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRG 180

Query: 283 FDCATHVKSTWVPAARRRERQLMAVTATAAA-GSSGSTSGAKKPRLIASQTTSHTSTSNT 342
           FDCATHVKSTWVPAARRRERQLMAVTATAAA GSS STSGAKKPRLI SQTTSHTSTSNT
Sbjct: 181 FDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNT 240

Query: 343 TPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFK 402
           TPPRSLDTSS   + G KEALP Q++A+AVFKCVRVTAVDDGDDEYAY A+VKIGGHVFK
Sbjct: 241 TPPRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFK 300

Query: 403 GFLYDQGVEAGDGFPNVSELHLGD--GGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGV 462
           GFLYDQGVEAGDGFPNVSELHLGD  GGGG+ NNRNGSSSSPLVDPSDVYN AASG GGV
Sbjct: 301 GFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGV 360

Query: 463 PGFLGGSNY 466
           PGFLGGSNY
Sbjct: 361 PGFLGGSNY 361

[Close]

BLAST of CcUC02G040570.1 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 331.3 bits (848), Expect = 1.4e-90
Identity = 233/439 (53.08%), Postives = 274/439 (62.41%), Query Frame = 0


Query: 52  VATTRR--LP-SDSGAFADWAAPSSSAARAAPDDLSLGFNAGPS------------AGPP 111
           VATTRR  LP SDSGAF DWAA +++ +RA  +DLSLGFNAG S            AG P
Sbjct: 9   VATTRRHNLPTSDSGAFTDWAATTTTPSRAT-EDLSLGFNAGSSVIHGGLGSASVAAGVP 68

Query: 112 PGPPVSMWSAAAQRSLNYGLGS-----EMGMVGLRDVYVVAPASTFNPNPHPHDANLMSD 171
             PP S        S+ YGL S     EMGMVGLRDV++VAPA       H  +A ++S 
Sbjct: 69  SWPPGS--------SVRYGLPSSAAATEMGMVGLRDVFLVAPAY------HHQNAGVISG 128

Query: 172 PHSLAVSNPATALGVGVGVGVIPLLTAG-PCLGVEED--NLLGNRSSTRGGGIQLWQQNQ 231
              +   N   A    +GVGVIPLLTAG P   VE+   N LGN         + WQ N 
Sbjct: 129 SDHM---NSNAAAAAALGVGVIPLLTAGTPQQNVEDSDINFLGNN--------RRWQNNN 188

Query: 232 QSSQHYLKKTASSSLDHHLHNASATNNDLIGGGIGGSGGLASSTSATTTCQDCGNQAKKD 291
            + +             +LH  S TN   +G     SG   S  S T TCQDCGNQAKK+
Sbjct: 189 NNHE-----------TQYLHFKS-TNQTTVGTSSNNSGS-GSGASGTATCQDCGNQAKKE 248

Query: 292 CSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGST-SGAKKPRL 351
           C  RRCRTCC+SRGFDC+THVKSTWV AARRRERQ+M   A   AGSS ST SG KKPR+
Sbjct: 249 CKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRI 308

Query: 352 IAS------QTTSHTSTSNTTPPRSLDTSSN----AGFKEALPSQVQARAVFKCVRVTAV 411
           + S      Q TSHTSTSN TPP+S +TSS+     G +EA P QV+A AVFKCVRVTAV
Sbjct: 309 VGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAV 368

Query: 412 DDGDDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNG-SSS 456
           +DGDDEYAYQAVVKIGGHVFKGFLYDQG+E  +GFP++S+LHL    GGS NN NG S+S
Sbjct: 369 EDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHL----GGSANNHNGVSAS 403

[Close]

BLAST of CcUC02G040570.1 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 292.7 bits (748), Expect = 5.7e-79
Identity = 191/351 (54.42%), Postives = 226/351 (64.39%), Query Frame = 0


Query: 120 MGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAG 179
           MGMVGLRDV++VAPA       H  +A ++S    +   N   A    +GVGVIPLLTAG
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDHM---NSNAAAAAALGVGVIPLLTAG 60

Query: 180 -PCLGVEED--NLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNND 239
            P   VE+   N LGN         + WQ N  + +             +LH  S TN  
Sbjct: 61  TPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS-TNQT 120

Query: 240 LIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPA 299
            +G     SG   S  S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TVGTSSNNSGS-GSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 300 ARRRERQLMAVTATAAAGSSGST-SGAKKPRLIAS------QTTSHTSTSNTTPPRSLDT 359
           ARRRERQ+M   A   AGSS ST SG KKPR++ S      Q TSHTSTSN TPP+S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 240

Query: 360 SSN----AGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 419
           SS+     G +EA P QV+A AVFKCVRVTAV+DGDDEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 241 SSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG 300

Query: 420 VEAGDGFPNVSELHLGDGGGGSRNNRNG-SSSSPLVDPSDVYNAAASGGGG 456
           +E  +GFP++S+LHL    GGS NN NG S+S+P++DP +V      G GG
Sbjct: 301 LEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of CcUC02G040570.1 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 292.7 bits (748), Expect = 5.7e-79
Identity = 191/351 (54.42%), Postives = 226/351 (64.39%), Query Frame = 0


Query: 120 MGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAG 179
           MGMVGLRDV++VAPA       H  +A ++S    +   N   A    +GVGVIPLLTAG
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDHM---NSNAAAAAALGVGVIPLLTAG 60

Query: 180 -PCLGVEED--NLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNND 239
            P   VE+   N LGN         + WQ N  + +             +LH  S TN  
Sbjct: 61  TPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS-TNQT 120

Query: 240 LIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPA 299
            +G     SG   S  S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TVGTSSNNSGS-GSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 300 ARRRERQLMAVTATAAAGSSGST-SGAKKPRLIAS------QTTSHTSTSNTTPPRSLDT 359
           ARRRERQ+M   A   AGSS ST SG KKPR++ S      Q TSHTSTSN TPP+S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 240

Query: 360 SSN----AGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 419
           SS+     G +EA P QV+A AVFKCVRVTAV+DGDDEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 241 SSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG 300

Query: 420 VEAGDGFPNVSELHLGDGGGGSRNNRNG-SSSSPLVDPSDVYNAAASGGGG 456
           +E  +GFP++S+LHL    GGS NN NG S+S+P++DP +V      G GG
Sbjct: 301 LEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of CcUC02G040570.1 vs. TAIR 10
Match: AT5G12330.3 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-41
Identity = 122/243 (50.21%), Postives = 144/243 (59.26%), Query Frame = 0


Query: 120 MGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAG 179
           MGMVGLRDV++VAPA       H  +A ++S    +   N   A    +GVGVIPLLTAG
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDHM---NSNAAAAAALGVGVIPLLTAG 60

Query: 180 -PCLGVEED--NLLGNRSSTRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNND 239
            P   VE+   N LGN         + WQ N  + +             +LH  S TN  
Sbjct: 61  TPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS-TNQT 120

Query: 240 LIGGGIGGSGGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPA 299
            +G     SG   S  S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TVGTSSNNSGS-GSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 300 ARRRERQLMAVTATAAAGSSGST-SGAKKPRLIAS------QTTSHTSTSNTTPPRSLDT 353
           ARRRERQ+M   A   AGSS ST SG KKPR++ S      Q TSHTSTSN TPP+S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 212

[Close]

BLAST of CcUC02G040570.1 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 156.4 bits (394), Expect = 6.4e-38
Identity = 108/256 (42.19%), Postives = 139/256 (54.30%), Query Frame = 0


Query: 207 NQQSSQHYLKKTASSSLDHHLHNASATNNDLI-GGGIGGSGGLASSTSATTTCQDCGNQA 266
           N  SSQ   +      L HH  +    + DL  G  I  S    SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 267 KKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGA--- 326
           KKDC+H RCRTCC+SRGFDC+THV+STW+P ARRRERQ     +T+  G    + GA   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 327 --KKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGFKEALPSQVQARAVFKCVRVTAVDD- 386
               P+     T   TS+S+  P  S         + + P +V + A+F+CV+++ VDD 
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG---EASFPGEVSSDALFRCVKMSGVDDG 221

Query: 387 GDDEYAYQAVVKIGGHVFKGFLYDQGVEA-----GDGFPNVSELHLGDGGGGSRNN---- 444
           GD +YAYQ  V IGGH+FKG LYDQG E+     G G  +      G GGGG   N    
Sbjct: 222 GDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNPPVV 281

The following BLAST results are available for this feature:

BLAST of CcUC02G040570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570417.1	2.5e-201	85.65	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512287.1	6.7e-199	86.94	protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo]	[more]
KAA0061772.1	3.5e-195	87.91	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa] >TY...	[more]
XP_038902210.1	6.8e-183	92.10	protein LATERAL ROOT PRIMORDIUM 1-like [Benincasa hispida]	[more]
KAG6605936.1	1.3e-181	84.86	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC02G040570.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	8.0e-78	54.42	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	9.0e-37	42.19	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9SD40	6.4e-35	42.54	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	1.2e-33	40.94	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
Q9LQZ5	1.1e-31	38.60	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]

BLAST of CcUC02G040570.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0Q8	1.7e-195	87.91	Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1FY67	5.6e-175	88.04	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1JCY6	9.9e-172	87.50	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC1114845...	[more]
A0A1S3BMJ0	7.1e-170	87.53	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A1S3BN66	7.1e-170	87.53	protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of CcUC02G040570.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.4	1.4e-90	53.08	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.2	5.7e-79	54.42	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	5.7e-79	54.42	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.3	1.2e-41	50.21	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	6.4e-38	42.19	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 359..406 e-value: 7.8E-29 score: 97.4
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 257..299 e-value: 7.1E-26 score: 87.9
None	No IPR available	PFAM	PF05142	DUF702	coord: 255..407 e-value: 1.2E-61 score: 207.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..353
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..442
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 308..353
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 427..442
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 120..465
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 120..465

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G040570	CcUC02G040570	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G040570.1-exon	CcUC02G040570.1-exon-CicolChr02:35820222..35820391	exon
CcUC02G040570.1-exon	CcUC02G040570.1-exon-CicolChr02:35824790..35825131	exon
CcUC02G040570.1-exon	CcUC02G040570.1-exon-CicolChr02:35825224..35826126	exon
CcUC02G040570.1-exon	CcUC02G040570.1-exon-CicolChr02:35833162..35833312	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G040570.1-cds	CcUC02G040570.1-cds-CicolChr02:35820222..35820391	CDS
CcUC02G040570.1-cds	CcUC02G040570.1-cds-CicolChr02:35824790..35825131	CDS
CcUC02G040570.1-cds	CcUC02G040570.1-cds-CicolChr02:35825224..35826126	CDS
CcUC02G040570.1-cds	CcUC02G040570.1-cds-CicolChr02:35833162..35833312	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G040570.1	CcUC02G040570.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding