CcUC02G039930.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G039930.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA polymerase epsilon subunit 3
Location	CicolChr02: 35224120 .. 35226528 (-)
Sequence length	825
RNA-Seq Expression	CcUC02G039930.1
Synteny	CcUC02G039930.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACTCATTTACGCCGAAGAACCATAGAAGAAGAAGAAGAACACATCGAGCAGCGTCAAGGGAGTAGAGAAATATGGAGAAAAAAGTAGGTGCCGGGATTGAAGAGCTTCCAAAGACTATAGTTCGCCGAGTGGTCAAACAGAAGCTCTCTCAGTGCTCTCGGGACCAGGACATCTCCGTCAACAAAGACTCGCTTCTTGCCTTTTGCGAGAGCGCTCGAATTTTCATCCATTACCTCTCCGCTACGTAAGCTTCGTAACTTGCCCTAATGTGTTTAATTCCGAATGAAATTCTGTCCATTCTGGTTAAAGCGATACATCTATTGTTGTTGTGGTGCTAGGGTTAACGAAAATGTTGTTATGTAATAGTTAATTCTTGCGTTCGTATTAACTGGTAGATCTCTAAGCAGGTCGAATGATATATGCAATGAATCAAAGAGGCAGACGATTAAGGCGGAGGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAATTGGTTAGGCCTCTTAAGGTCTCCCTCAATGGTGAGAAAGCTTCGCACCGCTTTGTTTACATTTTTTTATAAAGAAAAAACTGTCTTATTGGAGCCTGAAATTGCACGCTTAATTGGAGAACTATGTGTTGATACTTTTCACTTGCAAAGCATTGTTCAAAAAGATGTTCTAAAACTTCTCCTCGACCTGCATTACAGTTGCGCATTAGTTAAACACATGAATCTTATTTGCGATGAAGTTTTCCATGTACCCTTTTTATACTACTTGGTTGTTAGCATGGTCTTGTCTTTATGCGCTTGCTTGATTTCCCTGCCTAAAAATGCCTTGGATCGCGAGACGTTAAACACTTTCAAGCGTGTGAGGTATTGCACGGTTAGATGAAGCCCTATGCAAAGAGGACGTTGACATTATAAAACCAATCCTTATCAGTTCAAACATACAAAATGAGTGAATTTAGAATTGTGATAGGAACTGGACAAACGTTTGTCAATGTGAAAAGTGGATACAAGTTGCAAATGAATATTTAATGCATGTCTAAATGACTACTGTTAGTTTCATTAGTTGAATTACGCTTGTAATATGAGAAGGCTGCATGAAATTCATCTCAGTTTCCTTAGTTTTACTTGATTGAATTTCGATTCTGAGAGAGCTGGTGAGAGCTCAAATAACTCGTGGGTACTTTTATTAAAGGATTACGAAATAAATCTTTGAGTGCCTATGAATCCTCAGAACTTTTGGTTTGATGTCTTTTTATTTACTTGTATCCAGAAATGCTATTGAGAAATTGAGTACTTTAAACCTTGCTATATAGCGATGGGTTAGAGTTGGGATTTACTTTCTGGATTTCTTTTAGAACTACATACTTATAGCGCTCCAAAGAGTATGTAAAGTGAGCAAGAATTTCTGTTTACTGGGGTGTAACAGAGGTTTTGTTTATTGAATTCTGGAATAGGGGCAGTGCAATGTACTTTAACTATTTCTAATTTTGTTTGTAGTTGGATATATGAGAATTGATATTGAGTCTGATCACACTTCACATTCTTGGATGGAGAGATACATTCTTAATGCATATATAGAAAGACTTATTAGTTCCTAATGCTGCAATGCAAGTTCAATGTGCAGATACTTTTCTTGTGTTATCTTTGTTGCTCGGTTTATTATGAGGCCAGGAAGGGTAATTGGTCATGTGACAGTATGCCTATTCTTGTTGGATAGTACATACAAGTATTATAATGTCAAGGCTGTTTAGTGTGAAATGGACGATTGCTGTGTTTAATTTAATGGAAAATTAATGTGATATTGGGTTGCGCGCAGAAAGCAATATTAATCTCCACAGGCTATGATTTTCTATCTCATGGTCGCCAAATTCATGTTCATACTTATCCAAGATCAATATTAAGATAAGCAGCTGAACTTTTTTAATGATTTATTCAATGTGCAAACCTTTGCTTGGCTGAATATAGAATTCAGACGCAAGAATGCCGGAAAGAAGGCAGCTGCGTCCAGAGAAAAAGAAGTGAAAAAGAAGAGGAAGGTAGAAGAGCCAACAGCTGAAGGTACAGATGGTGACAGCAATGATGGCGTCGGAAATGAGGATAATGATGAAGCCGAAGATGAAGATGAAAATGGCGCCAGCGATAACTGAGAAACACGAACTTTTTCACTAATTGGGTACTTGAAATGAGGTTATTCTACACTACTACGTTTATTTTCAAACTAGAAAACCTGATTTATGAGAAGGTTTACAAATCTTCTGGAAAGGAAGATTTATTTAGGTTGTATATTGTGAAAGGCAACTGCACATTTTAGCAAGTTTTGTATCTCTTTGTAACCGTCTTTGTTAGAGAATTTCCCCCAATACTTAATAGTTCATTTGTTACTGCGTTGTTTTTGTTATGTTGATGCAAAGAC

mRNA sequence

GCACTCATTTACGCCGAAGAACCATAGAAGAAGAAGAAGAACACATCGAGCAGCGTCAAGGGAGTAGAGAAATATGGAGAAAAAAGTAGGTGCCGGGATTGAAGAGCTTCCAAAGACTATAGTTCGCCGAGTGGTCAAACAGAAGCTCTCTCAGTGCTCTCGGGACCAGGACATCTCCGTCAACAAAGACTCGCTTCTTGCCTTTTGCGAGAGCGCTCGAATTTTCATCCATTACCTCTCCGCTACATCTCTAAGCAGGTCGAATGATATATGCAATGAATCAAAGAGGCAGACGATTAAGGCGGAGGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAATTGGTTAGGCCTCTTAAGGTCTCCCTCAATGAATTCAGACGCAAGAATGCCGGAAAGAAGGCAGCTGCGTCCAGAGAAAAAGAAGTGAAAAAGAAGAGGAAGGTAGAAGAGCCAACAGCTGAAGGTACAGATGGTGACAGCAATGATGGCGTCGGAAATGAGGATAATGATGAAGCCGAAGATGAAGATGAAAATGGCGCCAGCGATAACTGAGAAACACGAACTTTTTCACTAATTGGGTACTTGAAATGAGGTTATTCTACACTACTACGTTTATTTTCAAACTAGAAAACCTGATTTATGAGAAGGTTTACAAATCTTCTGGAAAGGAAGATTTATTTAGGTTGTATATTGTGAAAGGCAACTGCACATTTTAGCAAGTTTTGTATCTCTTTGTAACCGTCTTTGTTAGAGAATTTCCCCCAATACTTAATAGTTCATTTGTTACTGCGTTGTTTTTGTTATGTTGATGCAAAGAC

Coding sequence (CDS)

ATGGAGAAAAAAGTAGGTGCCGGGATTGAAGAGCTTCCAAAGACTATAGTTCGCCGAGTGGTCAAACAGAAGCTCTCTCAGTGCTCTCGGGACCAGGACATCTCCGTCAACAAAGACTCGCTTCTTGCCTTTTGCGAGAGCGCTCGAATTTTCATCCATTACCTCTCCGCTACATCTCTAAGCAGGTCGAATGATATATGCAATGAATCAAAGAGGCAGACGATTAAGGCGGAGGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAATTGGTTAGGCCTCTTAAGGTCTCCCTCAATGAATTCAGACGCAAGAATGCCGGAAAGAAGGCAGCTGCGTCCAGAGAAAAAGAAGTGAAAAAGAAGAGGAAGGTAGAAGAGCCAACAGCTGAAGGTACAGATGGTGACAGCAATGATGGCGTCGGAAATGAGGATAATGATGAAGCCGAAGATGAAGATGAAAATGGCGCCAGCGATAACTGA

Protein sequence

MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEVKKKRKVEEPTAEGTDGDSNDGVGNEDNDEAEDEDENGASDN

Homology

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BLAST of CcUC02G039930.1 vs. NCBI nr
Match: XP_038900596.1 (DNA polymerase epsilon subunit 3 [Benincasa hispida] >XP_038900597.1 DNA polymerase epsilon subunit 3 [Benincasa hispida])

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-63
Identity = 142/161 (88.20%), Postives = 149/161 (92.55%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKK+GA IEELPKTIVRRVVK+KLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATS 
Sbjct: 1   MEKKIGAAIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSY 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
               DIC ESKRQTIKAEDVLKALEDMEFPELVRPLK SLNEFRRKNAGKKAAASREKEV
Sbjct: 61  ----DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEV 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVGNEDNDEAEDEDENGASDN 162
           KKKRK+EEPT EGTDG+S DGVGN+DNDE  +EDENGASD+
Sbjct: 121 KKKRKIEEPTVEGTDGESVDGVGNDDNDEDGNEDENGASDD 157

[Close]

BLAST of CcUC02G039930.1 vs. NCBI nr
Match: XP_008449581.1 (PREDICTED: DNA polymerase epsilon subunit D [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 7.0e-62
Identity = 142/161 (88.20%), Postives = 148/161 (91.93%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKK+ AGIEELPKTIVRRVVK+KLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
             +NDIC ESKRQTIKAEDVLKALEDMEFPELVRPLK SLNEFRRKNAGKKAAA REKEV
Sbjct: 61  --ANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAALREKEV 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVGNEDNDEAEDEDENGASDN 162
           KKKRKVEEPT EGTDG+S DGVG++DND  EDEDEN ASDN
Sbjct: 121 KKKRKVEEPTVEGTDGESIDGVGDDDND--EDEDENEASDN 155

[Close]

BLAST of CcUC02G039930.1 vs. NCBI nr
Match: XP_004140162.1 (DNA polymerase epsilon subunit D [Cucumis sativus] >XP_031742448.1 DNA polymerase epsilon subunit D [Cucumis sativus] >KGN48033.1 hypothetical protein Csa_004222 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 140/164 (85.37%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKK+G G EELPKTIVRRVVK+KLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
             +NDIC ESKRQTIKAEDVLKALEDMEFPELVRPLK SL+EFRRKNAGKKAAASREKE 
Sbjct: 61  --ANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEA 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVG---NEDNDEAEDEDENGASDN 162
           KKKRKVEEPT EGTDG+S D VG   N+DNDE EDEDEN ASD+
Sbjct: 121 KKKRKVEEPTVEGTDGESIDDVGNDDNDDNDEDEDEDENRASDD 160

[Close]

BLAST of CcUC02G039930.1 vs. NCBI nr
Match: XP_022152961.1 (DNA polymerase epsilon subunit 3 [Momordica charantia])

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55
Identity = 135/170 (79.41%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKKV A IEELPKTIVRRVVK+KLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
             SNDIC ESKRQTIKA+DVLKALEDMEFPELVRPLK SLNEFRRK+AGKKAAASREKE 
Sbjct: 61  --SNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLNEFRRKSAGKKAAASREKEA 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVGNEDND----------EAEDEDENGASD 161
           KKKRK+EEPT E    +S D VGN+DND          E EDE+ENGASD
Sbjct: 121 KKKRKIEEPTVE---DESKDDVGNDDNDNDHDEDEDEVEDEDEEENGASD 163

[Close]

BLAST of CcUC02G039930.1 vs. NCBI nr
Match: KAG7035929.1 (DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.9 bits (572), Expect = 4.8e-55
Identity = 135/169 (79.88%), Postives = 142/169 (84.02%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKKVGA IEELPKTIVRRVVK+KLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
             SNDIC ESKRQTIKAEDVLKALEDMEFPELVRPLK SLNEFR KNAGKKAAASR KE 
Sbjct: 61  --SNDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEA 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVGNE------DNDEAEDED--ENGASDN 162
           KK++  EEPT EGTDG+S D V N+      D DE EDED  ENG SD+
Sbjct: 121 KKRKIEEEPTVEGTDGESKDDVENDNDDNDKDEDEVEDEDEVENGGSDD 165

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy Swiss-Prot
Match: Q3SZN5 (DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 0


Query: 12  LPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESK 71
           LP  ++ R++K+ L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEVKKKRKVEEPTA 131
           R+T+ A DVL A+E+MEF   V PLK +L  +RR+  GKK A+ ++K+ K K+       
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK------- 129

Query: 132 EGTDGDSNDGVGNEDNDEAEDEDE 156
             TD +  D   +EDNDE E+  E
Sbjct: 130 --TDSEEQDKSRDEDNDEDEERLE 135

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy Swiss-Prot
Match: Q9NRF9 (DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 0


Query: 12  LPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESK 71
           LP  ++ R++K+ L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEVKKKRKVEEPTA 131
           R+T+ A DVL A+E+MEF   V PLK +L  +RR+  GKK A+ ++K+ K K+       
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK------- 129

Query: 132 EGTDGDSNDGVGNEDNDEAEDEDE 156
             TD +  D   +EDNDE E+  E
Sbjct: 130 --TDSEEQDKSRDEDNDEDEERLE 135

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy Swiss-Prot
Match: Q5R4W3 (DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 0


Query: 12  LPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESK 71
           LP  ++ R++K+ L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEVKKKRKVEEPTA 131
           R+T+ A DVL A+E+MEF   V PLK +L  +RR+  GKK A+ ++K+ K K+       
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK------- 129

Query: 132 EGTDGDSNDGVGNEDNDEAEDEDE 156
             TD +  D   +EDNDE E+  E
Sbjct: 130 --TDSEEQDKSRDEDNDEDEERLE 135

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy Swiss-Prot
Match: Q9JKP7 (DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-09
Identity = 45/145 (31.03%), Postives = 81/145 (55.86%), Query Frame = 0


Query: 12  LPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESK 71
           LP  ++ R++K+ L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEVKKKRKVEEPTA 131
           R+T+ A DVL A+E+MEF   + PLK +L  +RR   GKK A+ ++K+ K K+  EE   
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQKKKDKDKKDSEEQ-- 129

Query: 132 EGTDGDSNDGVGNEDNDEAEDEDEN 157
                D +  V  ED +  +++D+N
Sbjct: 130 -----DKSREVEEEDEERLDEDDQN 138

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy Swiss-Prot
Match: Q642A5 (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-09
Identity = 45/145 (31.03%), Postives = 82/145 (56.55%), Query Frame = 0


Query: 12  LPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESK 71
           LP  ++ R++K+ L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEVKKKRKVEEPTA 131
           R+T+ A DVL A+E+MEF   V PLK +L  +RR+  GKK A+ ++K+ K K+  EE   
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKDCEEQDK 129

Query: 132 EGTDGDSNDGVGNEDNDEAEDEDEN 157
              + D ++   +E+    E+E +N
Sbjct: 130 SREEEDEDEERLDEEEQNEEEEVDN 145

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy TrEMBL
Match: A0A1S3BNA4 (DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.4e-62
Identity = 142/161 (88.20%), Postives = 148/161 (91.93%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKK+ AGIEELPKTIVRRVVK+KLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
             +NDIC ESKRQTIKAEDVLKALEDMEFPELVRPLK SLNEFRRKNAGKKAAA REKEV
Sbjct: 61  --ANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAALREKEV 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVGNEDNDEAEDEDENGASDN 162
           KKKRKVEEPT EGTDG+S DGVG++DND  EDEDEN ASDN
Sbjct: 121 KKKRKVEEPTVEGTDGESIDGVGDDDND--EDEDENEASDN 155

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy TrEMBL
Match: A0A0A0KEV7 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G425700 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.4e-61
Identity = 140/164 (85.37%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKK+G G EELPKTIVRRVVK+KLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
             +NDIC ESKRQTIKAEDVLKALEDMEFPELVRPLK SL+EFRRKNAGKKAAASREKE 
Sbjct: 61  --ANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEA 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVG---NEDNDEAEDEDENGASDN 162
           KKKRKVEEPT EGTDG+S D VG   N+DNDE EDEDEN ASD+
Sbjct: 121 KKKRKVEEPTVEGTDGESIDDVGNDDNDDNDEDEDEDENRASDD 160

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy TrEMBL
Match: A0A6J1DJA4 (DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.2e-56
Identity = 135/170 (79.41%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKKV A IEELPKTIVRRVVK+KLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
             SNDIC ESKRQTIKA+DVLKALEDMEFPELVRPLK SLNEFRRK+AGKKAAASREKE 
Sbjct: 61  --SNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLNEFRRKSAGKKAAASREKEA 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVGNEDND----------EAEDEDENGASD 161
           KKKRK+EEPT E    +S D VGN+DND          E EDE+ENGASD
Sbjct: 121 KKKRKIEEPTVE---DESKDDVGNDDNDNDHDEDEDEVEDEDEEENGASD 163

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy TrEMBL
Match: A0A6J1H495 (DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.3e-55
Identity = 134/169 (79.29%), Postives = 141/169 (83.43%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKKVGA IEELPKTIVRRVVK+KLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
             SNDIC ESKRQTIKAEDVLKALEDMEFPELVRPLK SLNEFR KNAGKKAAASR KE 
Sbjct: 61  --SNDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEA 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVGNE--------DNDEAEDEDENGASDN 162
           KK++  EEPT EGTDG+S D V N+        D DE EDE ENG SD+
Sbjct: 121 KKRKIEEEPTVEGTDGESKDDVENDNDDNDDGNDKDEDEDEVENGGSDD 165

[Close]

BLAST of CcUC02G039930.1 vs. ExPASy TrEMBL
Match: A0A6J1K184 (DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.9e-55
Identity = 134/173 (77.46%), Postives = 143/173 (82.66%), Query Frame = 0


Query: 1   MEKKVGAGIEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKKVGA IEELPKTIVRRVVK+KLSQCSR+QDISVNKDSLLAFCESAR+FIHYLSAT  
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSAT-- 60

Query: 61  SRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKAAASREKEV 120
             SNDIC ESKRQTIKAEDVLKALEDMEFPELVRPLK SLNEFR KNAGKKAAASR KE 
Sbjct: 61  --SNDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEA 120

Query: 121 KKKRKVEEPTAEGTDGDSNDGVGN------EDNDEAEDED------ENGASDN 162
           KK++  EEPT EGTDG+S D V N      +DND+ EDED      ENG SD+
Sbjct: 121 KKRKIEEEPTVEGTDGESKDDVENDNDDDDDDNDKDEDEDEDKDEVENGGSDD 169

[Close]

BLAST of CcUC02G039930.1 vs. TAIR 10
Match: AT2G27470.1 (nuclear factor Y, subunit B11 )

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-30
Identity = 84/184 (45.65%), Postives = 113/184 (61.41%), Query Frame = 0


Query: 9   IEELPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICN 68
           ++ELP  IVRRVVK+KLS+CS D D+S++K++LLAF ESARIFIHYLSAT    +ND C 
Sbjct: 8   VDELPLAIVRRVVKKKLSECSPDYDVSIHKEALLAFSESARIFIHYLSAT----ANDFCK 67

Query: 69  ESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKNAGKKA---------------- 128
           +++RQT+KA+DV KALE+M+F E + PLK SL +F++KNAGKKA                
Sbjct: 68  DARRQTMKADDVFKALEEMDFSEFLEPLKSSLEDFKKKNAGKKAGAAAASYPAGGAALKS 127

Query: 129 ---AASREKEVKK-------------KRKVEEPTAEGTDGDSNDGVGNEDNDEAEDEDEN 161
               AS+ KE KK             K K++E T    +   ND    E+ ++ EDE+ N
Sbjct: 128 SSGTASKPKETKKRKQEEPSTQKGARKSKIDEETKRNDEETENDNTEEENGNDEEDENGN 187

[Close]

BLAST of CcUC02G039930.1 vs. TAIR 10
Match: AT5G23090.2 (nuclear factor Y, subunit B13 )

HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04
Identity = 28/93 (30.11%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 12  LPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESK 71
           LPK  + +++K+ L       D+ V +D+     E    FI+ +S    S SND+CN+  
Sbjct: 16  LPKATMTKIIKEML-----PPDVRVARDAQDLLIECCVEFINLVS----SESNDVCNKED 75

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKVSLNEFR 105
           ++TI  E VLKAL+ + F E +  +  +  + +
Sbjct: 76  KRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of CcUC02G039930.1 vs. TAIR 10
Match: AT5G23090.1 (nuclear factor Y, subunit B13 )

HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04
Identity = 28/93 (30.11%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 12  LPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESK 71
           LPK  + +++K+ L       D+ V +D+     E    FI+ +S    S SND+CN+  
Sbjct: 16  LPKATMTKIIKEML-----PPDVRVARDAQDLLIECCVEFINLVS----SESNDVCNKED 75

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKVSLNEFR 105
           ++TI  E VLKAL+ + F E +  +  +  + +
Sbjct: 76  KRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of CcUC02G039930.1 vs. TAIR 10
Match: AT5G23090.4 (nuclear factor Y, subunit B13 )

HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04
Identity = 28/93 (30.11%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 12  LPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESK 71
           LPK  + +++K+ L       D+ V +D+     E    FI+ +S    S SND+CN+  
Sbjct: 16  LPKATMTKIIKEML-----PPDVRVARDAQDLLIECCVEFINLVS----SESNDVCNKED 75

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKVSLNEFR 105
           ++TI  E VLKAL+ + F E +  +  +  + +
Sbjct: 76  KRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of CcUC02G039930.1 vs. TAIR 10
Match: AT5G08190.1 (nuclear factor Y, subunit B12 )

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 28/93 (30.11%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 12  LPKTIVRRVVKQKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICNESK 71
           LPK  + +++K+ L       D+ V +D+     E    FI+ +S    S SN++CN+  
Sbjct: 16  LPKATMTKIIKEML-----PADVRVARDAQDLLIECCVEFINLIS----SESNEVCNKED 75

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKVSLNEFR 105
           ++TI  E VLKAL+ + F E V  +  +  + +
Sbjct: 76  KRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHK 99

The following BLAST results are available for this feature:

BLAST of CcUC02G039930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900596.1	1.7e-63	88.20	DNA polymerase epsilon subunit 3 [Benincasa hispida] >XP_038900597.1 DNA polymer...	[more]
XP_008449581.1	7.0e-62	88.20	PREDICTED: DNA polymerase epsilon subunit D [Cucumis melo]	[more]
XP_004140162.1	1.3e-60	85.37	DNA polymerase epsilon subunit D [Cucumis sativus] >XP_031742448.1 DNA polymeras...	[more]
XP_022152961.1	1.3e-55	79.41	DNA polymerase epsilon subunit 3 [Momordica charantia]	[more]
KAG7035929.1	4.8e-55	79.88	DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CcUC02G039930.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZN5	2.9e-10	33.33	DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1	[more]
Q9NRF9	2.9e-10	33.33	DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1	[more]
Q5R4W3	2.9e-10	33.33	DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1	[more]
Q9JKP7	2.4e-09	31.03	DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1	[more]
Q642A5	3.2e-09	31.03	DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=...	[more]

BLAST of CcUC02G039930.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNA4	3.4e-62	88.20	DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV...	[more]
A0A0A0KEV7	6.4e-61	85.37	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4257...	[more]
A0A6J1DJA4	6.2e-56	79.41	DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 ...	[more]
A0A6J1H495	2.3e-55	79.29	DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 P...	[more]
A0A6J1K184	8.9e-55	77.46	DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=...	[more]

BLAST of CcUC02G039930.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27470.1	3.4e-30	45.65	nuclear factor Y, subunit B11	[more]
AT5G23090.2	1.4e-04	30.11	nuclear factor Y, subunit B13	[more]
AT5G23090.1	1.4e-04	30.11	nuclear factor Y, subunit B13	[more]
AT5G23090.4	1.4e-04	30.11	nuclear factor Y, subunit B13	[more]
AT5G08190.1	2.4e-04	30.11	nuclear factor Y, subunit B12	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 9..159 e-value: 1.4E-30 score: 107.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..125
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 11..84 e-value: 2.0E-6 score: 28.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..161
None	No IPR available	PANTHER	PTHR46172	DNA POLYMERASE EPSILON SUBUNIT 3	coord: 3..154

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G039930	CcUC02G039930	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G039930.1-exon	CcUC02G039930.1-exon-CicolChr02:35224120..35224567	exon
CcUC02G039930.1-exon	CcUC02G039930.1-exon-CicolChr02:35226001..35226131	exon
CcUC02G039930.1-exon	CcUC02G039930.1-exon-CicolChr02:35226283..35226528	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G039930.1-three_prime_utr	CcUC02G039930.1-three_prime_utr-CicolChr02:35224120..35224385	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G039930.1-cds	CcUC02G039930.1-cds-CicolChr02:35224386..35224567	CDS
CcUC02G039930.1-cds	CcUC02G039930.1-cds-CicolChr02:35226001..35226131	CDS
CcUC02G039930.1-cds	CcUC02G039930.1-cds-CicolChr02:35226283..35226455	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G039930.1-five_prime_utr	CcUC02G039930.1-five_prime_utr-CicolChr02:35226456..35226528	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G039930.1	CcUC02G039930.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0006272	leading strand elongation
biological_process	GO:0042766	nucleosome mobilization
cellular_component	GO:0008623	CHRAC
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0031490	chromatin DNA binding