CcUC02G039750.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G039750.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Fatty acyl-CoA reductase
Location	CicolChr02: 35048457 .. 35048671 (-)
Sequence length	183
RNA-Seq Expression	CcUC02G039750.1
Synteny	CcUC02G039750.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTAATTTCACTACTTAATTTCTTGTTTATAAGGGCAAAGATGTATGGATGGCCAAATACATATGTATTTACAAAGGCAATGGTCGAGATGATTATTAGCAACATAAAAGATAATGTATCATTGGTTATAATACGACCAACCATCATAACAAGTACTTATAAACACCCTTTTCCAGGTTGGATCGAAGCCATGAGGTATACAATTAATTAA

mRNA sequence

ATGTTGGCAAAGATGTATGGATGGCCAAATACATATGTATTTACAAAGGCAATGGTCGAGATGATTATTAGCAACATAAAAGATAATGTATCATTGGTTATAATACGACCAACCATCATAACAAGTACTTATAAACACCCTTTTCCAGGTTGGATCGAAGCCATGAGGTATACAATTAATTAA

Coding sequence (CDS)

ATGTTGGCAAAGATGTATGGATGGCCAAATACATATGTATTTACAAAGGCAATGGTCGAGATGATTATTAGCAACATAAAAGATAATGTATCATTGGTTATAATACGACCAACCATCATAACAAGTACTTATAAACACCCTTTTCCAGGTTGGATCGAAGCCATGAGGTATACAATTAATTAA

Protein sequence

MLAKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMRYTIN

Homology

[Close]

BLAST of CcUC02G039750.1 vs. NCBI nr
Match: XP_016902252.1 (PREDICTED: fatty acyl-CoA reductase 3-like [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 6.7e-18
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK+YGWPNTYVFTKAM EMIIS +KDN+ +VIIRPTI+TSTYK PFPGWIE MR
Sbjct: 124 AKLYGWPNTYVFTKAMGEMIISELKDNIPMVIIRPTIVTSTYKQPFPGWIEGMR 177

[Close]

BLAST of CcUC02G039750.1 vs. NCBI nr
Match: XP_022153083.1 (fatty acyl-CoA reductase 3-like [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AKMYGWPNTYVFTKAM EM++S+ KD++SL+IIRPTI+TSTYK PFPGWIE +R
Sbjct: 231 AKMYGWPNTYVFTKAMGEMLVSDQKDDLSLIIIRPTIVTSTYKEPFPGWIEGVR 284

[Close]

BLAST of CcUC02G039750.1 vs. NCBI nr
Match: XP_022986982.1 (fatty acyl-CoA reductase 3-like [Cucurbita maxima])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 40/54 (74.07%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AKMYGWPNTYVFTKAM EM+++++KDN+ ++IIRPTI+TSTYK PFPGWIE +R
Sbjct: 229 AKMYGWPNTYVFTKAMGEMMVNDLKDNLPVIIIRPTIVTSTYKEPFPGWIEGIR 282

[Close]

BLAST of CcUC02G039750.1 vs. NCBI nr
Match: XP_022943504.1 (fatty acyl-CoA reductase 3-like [Cucurbita moschata])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 40/54 (74.07%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AKMYGWPNTYVFTKAM EM+++++KDN+ ++IIRPTI+TSTYK PFPGWIE +R
Sbjct: 229 AKMYGWPNTYVFTKAMGEMMVNDLKDNLPVIIIRPTIVTSTYKEPFPGWIEGIR 282

[Close]

BLAST of CcUC02G039750.1 vs. NCBI nr
Match: KAG6570488.1 (Fatty acyl-CoA reductase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 40/54 (74.07%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AKMYGWPNTYVFTKAM EM+++++KDN+ ++IIRPTI+TSTYK PFPGWIE +R
Sbjct: 229 AKMYGWPNTYVFTKAMGEMMVNDLKDNLPVIIIRPTIVTSTYKEPFPGWIEGIR 282

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy Swiss-Prot
Match: Q93ZB9 (Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana OX=3702 GN=FAR3 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-17
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AKMYGWPNTYVFTKAM EM++   ++N+SLV++RP+IITST+K PFPGW E +R
Sbjct: 232 AKMYGWPNTYVFTKAMGEMMVGTKRENLSLVLLRPSIITSTFKEPFPGWTEGIR 285

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy Swiss-Prot
Match: Q9LXN3 (Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana OX=3702 GN=FAR4 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-16
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK++GWPNTYVFTK+M EM++ N ++N+ +VIIRPT+ITST+  PFPGWIE +R
Sbjct: 228 AKLHGWPNTYVFTKSMGEMLLGNYRENLPIVIIRPTMITSTFSEPFPGWIEGLR 281

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy Swiss-Prot
Match: Q1PEI6 (Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana OX=3702 GN=FAR8 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.8e-16
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK++GWPNTYVFTK+M EM++ N K+N+ LVIIRPT+ITST   PFPGWIE +R
Sbjct: 229 AKLHGWPNTYVFTKSMGEMLLGNHKENLPLVIIRPTMITSTLFEPFPGWIEGLR 282

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy Swiss-Prot
Match: Q0WRB0 (Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana OX=3702 GN=FAR5 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.5e-16
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK++GWPNTYVFTK+M EM++   K+N+ LVIIRPT+ITST   PFPGWIE +R
Sbjct: 229 AKLHGWPNTYVFTKSMGEMLLGKHKENLPLVIIRPTMITSTLSEPFPGWIEGLR 282

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy Swiss-Prot
Match: Q9FMQ9 (Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana OX=3702 GN=FAR7 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.5e-16
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           A++YGWPNTYVFTKAM EM++ + ++ + +VIIRPTIITST+  PFPGWIE ++
Sbjct: 155 ARLYGWPNTYVFTKAMGEMLLGHYRETMPIVIIRPTIITSTFSDPFPGWIEGLK 208

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy TrEMBL
Match: A0A1S4E1Z9 (Fatty acyl-CoA reductase OS=Cucumis melo OX=3656 GN=LOC103498023 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.2e-18
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK+YGWPNTYVFTKAM EMIIS +KDN+ +VIIRPTI+TSTYK PFPGWIE MR
Sbjct: 124 AKLYGWPNTYVFTKAMGEMIISELKDNIPMVIIRPTIVTSTYKQPFPGWIEGMR 177

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy TrEMBL
Match: A0A6J1DGK4 (Fatty acyl-CoA reductase OS=Momordica charantia OX=3673 GN=LOC111020669 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AKMYGWPNTYVFTKAM EM++S+ KD++SL+IIRPTI+TSTYK PFPGWIE +R
Sbjct: 231 AKMYGWPNTYVFTKAMGEMLVSDQKDDLSLIIIRPTIVTSTYKEPFPGWIEGVR 284

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy TrEMBL
Match: A0A6J1J929 (Fatty acyl-CoA reductase OS=Cucurbita maxima OX=3661 GN=LOC111484571 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.1e-17
Identity = 40/54 (74.07%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AKMYGWPNTYVFTKAM EM+++++KDN+ ++IIRPTI+TSTYK PFPGWIE +R
Sbjct: 229 AKMYGWPNTYVFTKAMGEMMVNDLKDNLPVIIIRPTIVTSTYKEPFPGWIEGIR 282

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy TrEMBL
Match: A0A6J1FUI8 (Fatty acyl-CoA reductase OS=Cucurbita moschata OX=3662 GN=LOC111448256 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.1e-17
Identity = 40/54 (74.07%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AKMYGWPNTYVFTKAM EM+++++KDN+ ++IIRPTI+TSTYK PFPGWIE +R
Sbjct: 229 AKMYGWPNTYVFTKAMGEMMVNDLKDNLPVIIIRPTIVTSTYKEPFPGWIEGIR 282

[Close]

BLAST of CcUC02G039750.1 vs. ExPASy TrEMBL
Match: B9SCQ9 (Fatty acyl-CoA reductase OS=Ricinus communis OX=3988 GN=RCOM_1279620 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.0e-17
Identity = 40/54 (74.07%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK+YGWPNTYVFTKAM EMI+ ++K+N+S+VI+RPTIITSTYK PFPGW+E +R
Sbjct: 151 AKLYGWPNTYVFTKAMGEMIVGHLKENLSVVILRPTIITSTYKEPFPGWVEGVR 204

[Close]

BLAST of CcUC02G039750.1 vs. TAIR 10
Match: AT4G33790.1 (Jojoba acyl CoA reductase-related male sterility protein )

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-18
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AKMYGWPNTYVFTKAM EM++   ++N+SLV++RP+IITST+K PFPGW E +R
Sbjct: 232 AKMYGWPNTYVFTKAMGEMMVGTKRENLSLVLLRPSIITSTFKEPFPGWTEGIR 285

[Close]

BLAST of CcUC02G039750.1 vs. TAIR 10
Match: AT3G44540.1 (fatty acid reductase 4 )

HSP 1 Score: 86.3 bits (212), Expect = 9.3e-18
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK++GWPNTYVFTK+M EM++ N ++N+ +VIIRPT+ITST+  PFPGWIE +R
Sbjct: 228 AKLHGWPNTYVFTKSMGEMLLGNYRENLPIVIIRPTMITSTFSEPFPGWIEGLR 281

[Close]

BLAST of CcUC02G039750.1 vs. TAIR 10
Match: AT3G44540.2 (fatty acid reductase 4 )

HSP 1 Score: 86.3 bits (212), Expect = 9.3e-18
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK++GWPNTYVFTK+M EM++ N ++N+ +VIIRPT+ITST+  PFPGWIE +R
Sbjct: 228 AKLHGWPNTYVFTKSMGEMLLGNYRENLPIVIIRPTMITSTFSEPFPGWIEGLR 281

[Close]

BLAST of CcUC02G039750.1 vs. TAIR 10
Match: AT3G44560.1 (fatty acid reductase 8 )

HSP 1 Score: 84.7 bits (208), Expect = 2.7e-17
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK++GWPNTYVFTK+M EM++ N K+N+ LVIIRPT+ITST   PFPGWIE +R
Sbjct: 229 AKLHGWPNTYVFTKSMGEMLLGNHKENLPLVIIRPTMITSTLFEPFPGWIEGLR 282

[Close]

BLAST of CcUC02G039750.1 vs. TAIR 10
Match: AT3G44550.1 (fatty acid reductase 5 )

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-17
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 3   AKMYGWPNTYVFTKAMVEMIISNIKDNVSLVIIRPTIITSTYKHPFPGWIEAMR 57
           AK++GWPNTYVFTK+M EM++   K+N+ LVIIRPT+ITST   PFPGWIE +R
Sbjct: 229 AKLHGWPNTYVFTKSMGEMLLGKHKENLPLVIIRPTMITSTLSEPFPGWIEGLR 282

The following BLAST results are available for this feature:

BLAST of CcUC02G039750.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902252.1	6.7e-18	81.48	PREDICTED: fatty acyl-CoA reductase 3-like [Cucumis melo]	[more]
XP_022153083.1	7.4e-17	77.78	fatty acyl-CoA reductase 3-like [Momordica charantia]	[more]
XP_022986982.1	1.3e-16	74.07	fatty acyl-CoA reductase 3-like [Cucurbita maxima]	[more]
XP_022943504.1	1.3e-16	74.07	fatty acyl-CoA reductase 3-like [Cucurbita moschata]	[more]
KAG6570488.1	1.3e-16	74.07	Fatty acyl-CoA reductase 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CcUC02G039750.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZB9	4.5e-17	68.52	Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana OX=3702 GN=FAR3 PE=1 SV=1	[more]
Q9LXN3	1.3e-16	64.81	Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana OX=3702 GN=FAR4 PE=1...	[more]
Q1PEI6	3.8e-16	68.52	Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana OX=3702 GN=FAR8 PE=1 SV=1	[more]
Q0WRB0	8.5e-16	66.67	Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana OX=3702 GN=FAR5 PE=1...	[more]
Q9FMQ9	8.5e-16	62.96	Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana OX=3702 GN=FAR7 PE=3...	[more]

BLAST of CcUC02G039750.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1Z9	3.2e-18	81.48	Fatty acyl-CoA reductase OS=Cucumis melo OX=3656 GN=LOC103498023 PE=3 SV=1	[more]
A0A6J1DGK4	3.6e-17	77.78	Fatty acyl-CoA reductase OS=Momordica charantia OX=3673 GN=LOC111020669 PE=3 SV=...	[more]
A0A6J1J929	6.1e-17	74.07	Fatty acyl-CoA reductase OS=Cucurbita maxima OX=3661 GN=LOC111484571 PE=3 SV=1	[more]
A0A6J1FUI8	6.1e-17	74.07	Fatty acyl-CoA reductase OS=Cucurbita moschata OX=3662 GN=LOC111448256 PE=3 SV=1	[more]
B9SCQ9	8.0e-17	74.07	Fatty acyl-CoA reductase OS=Ricinus communis OX=3988 GN=RCOM_1279620 PE=3 SV=1	[more]

BLAST of CcUC02G039750.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33790.1	3.2e-18	68.52	Jojoba acyl CoA reductase-related male sterility protein	[more]
AT3G44540.1	9.3e-18	64.81	fatty acid reductase 4	[more]
AT3G44540.2	9.3e-18	64.81	fatty acid reductase 4	[more]
AT3G44560.1	2.7e-17	68.52	fatty acid reductase 8	[more]
AT3G44550.1	6.0e-17	66.67	fatty acid reductase 5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 2..59 e-value: 4.4E-9 score: 37.7
None	No IPR available	PANTHER	PTHR11011:SF84	FATTY ACYL-COA REDUCTASE	coord: 3..56
IPR013120	Fatty acyl-coenzyme A reductase, NAD-binding domain	PFAM	PF07993	NAD_binding_4	coord: 3..59 e-value: 4.3E-14 score: 52.3
IPR026055	Fatty acyl-CoA reductase	PANTHER	PTHR11011	MALE STERILITY PROTEIN 2-RELATED	coord: 3..56
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 7..56

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G039750	CcUC02G039750	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G039750.1-exon	CcUC02G039750.1-exon-CicolChr02:35048457..35048634	exon
CcUC02G039750.1-exon	CcUC02G039750.1-exon-CicolChr02:35048667..35048671	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G039750.1-cds	CcUC02G039750.1-cds-CicolChr02:35048457..35048634	CDS
CcUC02G039750.1-cds	CcUC02G039750.1-cds-CicolChr02:35048667..35048671	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G039750.1	CcUC02G039750.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0035336	long-chain fatty-acyl-CoA metabolic process
biological_process	GO:0010345	suberin biosynthetic process
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity
molecular_function	GO:0102965	alcohol-forming fatty acyl-CoA reductase activity