CcUC02G038040.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G038040.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RING-type E3 ubiquitin transferase
Location	CicolChr02: 33480094 .. 33480699 (+)
Sequence length	606
RNA-Seq Expression	CcUC02G038040.1
Synteny	CcUC02G038040.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCGAGTCCGCCGCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCGTGGTCAATCTCGACCATCGCAATCGTATGCATCTTCTTCCTACTGTTGAGCAACTACAGGATATTGAAACGACTGTTCCATAGAGTGATCTCCGGTCGACCTAGGGTCGAAAACCCTACTGATCCTTCCCCGCAAATCCATGGCCATGGATTGGAGGCCTCAACGATTCATTTGCTACCTATATCACAGTTCAAAAAGAATGAAAAATTCGAATCAACGGCAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACAATTACCGAATTGCAATCATTCGTTTCATAGTTCTTGCATCGACGCCTGGTTCCGTGATCATTCGAGTTGTCCACTCTGCAGATTGCAAATCTCGAGTTTCTCTCTCGATTTCTCTACTCCTGATTCTTCTTTGGGAATGCTGGAGACGCTTGGAAGAGAAAACGTTCTACGAGAAAGAGTACCGCATTATCAAACAGTTCGTGCTCAAAATCTGCAGCACTCGGAATTGAGAAGAGATGCATCGGTTCAAGGATCAGATCAATGA

mRNA sequence

ATGTCATCGAGTCCGCCGCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCGTGGTCAATCTCGACCATCGCAATCGTATGCATCTTCTTCCTACTGTTGAGCAACTACAGGATATTGAAACGACTGTTCCATAGAGTGATCTCCGGTCGACCTAGGGTCGAAAACCCTACTGATCCTTCCCCGCAAATCCATGGCCATGGATTGGAGGCCTCAACGATTCATTTGCTACCTATATCACAGTTCAAAAAGAATGAAAAATTCGAATCAACGGCAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACAATTACCGAATTGCAATCATTCGTTTCATAGTTCTTGCATCGACGCCTGGTTCCGTGATCATTCGAGTTGTCCACTCTGCAGATTGCAAATCTCGAGTTTCTCTCTCGATTTCTCTACTCCTGATTCTTCTTTGGGAATGCTGGAGACGCTTGGAAGAGAAAACGTTCTACGAGAAAGAGTACCGCATTATCAAACAGTTCGTGCTCAAAATCTGCAGCACTCGGAATTGAGAAGAGATGCATCGGTTCAAGGATCAGATCAATGA

Coding sequence (CDS)

ATGTCATCGAGTCCGCCGCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCGTGGTCAATCTCGACCATCGCAATCGTATGCATCTTCTTCCTACTGTTGAGCAACTACAGGATATTGAAACGACTGTTCCATAGAGTGATCTCCGGTCGACCTAGGGTCGAAAACCCTACTGATCCTTCCCCGCAAATCCATGGCCATGGATTGGAGGCCTCAACGATTCATTTGCTACCTATATCACAGTTCAAAAAGAATGAAAAATTCGAATCAACGGCAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACAATTACCGAATTGCAATCATTCGTTTCATAGTTCTTGCATCGACGCCTGGTTCCGTGATCATTCGAGTTGTCCACTCTGCAGATTGCAAATCTCGAGTTTCTCTCTCGATTTCTCTACTCCTGATTCTTCTTTGGGAATGCTGGAGACGCTTGGAAGAGAAAACGTTCTACGAGAAAGAGTACCGCATTATCAAACAGTTCGTGCTCAAAATCTGCAGCACTCGGAATTGAGAAGAGATGCATCGGTTCAAGGATCAGATCAATGA

Protein sequence

MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILKRLFHRVISGRPRVENPTDPSPQIHGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERVPHYQTVRAQNLQHSELRRDASVQGSDQ

Homology

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BLAST of CcUC02G038040.1 vs. NCBI nr
Match: XP_008448367.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >KAA0061954.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa] >TYK23976.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 4.7e-84
Identity = 162/207 (78.26%), Postives = 172/207 (83.09%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILK---RLFHRVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI IVC+ FLLLSNYR+LK   R+ H + SGRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIH HGLE S I LLPISQFKK E+ EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERV 180
           LPNCNHSFHSSCIDAWFRDHSSCPLCRLQ+ S    FSTPDSS  MLETLGREN+LRERV
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWS----FSTPDSSSAMLETLGRENILRERV 180

Query: 181 PHYQTVRAQNLQHSELRRDASVQGSDQ 202
            HYQT+RAQ LQH E RRD S+QGSDQ
Sbjct: 181 AHYQTLRAQILQHPEFRRDESIQGSDQ 203

[Close]

BLAST of CcUC02G038040.1 vs. NCBI nr
Match: XP_031743630.1 (RING-H2 finger protein ATL52-like [Cucumis sativus] >KGN47355.1 hypothetical protein Csa_023057 [Cucumis sativus])

HSP 1 Score: 317.8 bits (813), Expect = 6.8e-83
Identity = 162/208 (77.88%), Postives = 174/208 (83.65%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILK---RLFHRVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI +VCI FLLLSNYR+LK   R+ H + +GRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIHGHGLE S I LLPISQFKKNE+ EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPD-SSLGMLETLGRENVLRER 180
           LPNCNHSFHS CIDAWFR+HSSCPLCRLQ+    L FSTPD SS  MLETLGRENVLRER
Sbjct: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQV----LSFSTPDSSSSAMLETLGRENVLRER 180

Query: 181 VPHYQTVRAQNLQHSELRRDASVQGSDQ 202
           V HYQT+RAQ LQH E RRDAS+QG+DQ
Sbjct: 181 VAHYQTLRAQILQHPEFRRDASIQGTDQ 204

[Close]

BLAST of CcUC02G038040.1 vs. NCBI nr
Match: KAG6570731.1 (RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010575.1 RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.8 bits (795), Expect = 8.4e-81
Identity = 158/203 (77.83%), Postives = 171/203 (84.24%), Query Frame = 0


Query: 5   PPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILK---RLFHRVISGRPRV---ENP 64
           PPPPSPVPDYSSWSPWSIS IAIVCI  LLLSNYRILK   R+ H +  GR  V   ENP
Sbjct: 8   PPPPSPVPDYSSWSPWSISIIAIVCIVVLLLSNYRILKRWCRVLHGLFCGRFVVQFDENP 67

Query: 65  TDPSPQIHGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQLPNC 124
            DPSP++H HGLEASTI LLPISQFKKNE+ ESTAS NTECAVCLGEFEEGELIK LPNC
Sbjct: 68  NDPSPEVHVHGLEASTIRLLPISQFKKNEEAESTASINTECAVCLGEFEEGELIKNLPNC 127

Query: 125 NHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERVPHYQ 184
           NHSFHSSCIDAW R+HSSCPLCRL +S+ S+D  TPDSS  MLETLGRE+V RERV +YQ
Sbjct: 128 NHSFHSSCIDAWLRNHSSCPLCRLHVSNLSIDCPTPDSSSAMLETLGREDVERERVSYYQ 187

Query: 185 TVRAQNLQHSELRRDASVQGSDQ 202
           T+RAQ LQ+ ELRRDASVQGSDQ
Sbjct: 188 TLRAQILQNPELRRDASVQGSDQ 210

[Close]

BLAST of CcUC02G038040.1 vs. NCBI nr
Match: XP_023512261.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.9 bits (790), Expect = 3.2e-80
Identity = 157/203 (77.34%), Postives = 170/203 (83.74%), Query Frame = 0


Query: 5   PPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILK---RLFHRVISGRPRV---ENP 64
           PPPPSPVPDYSSWSPWSIS IAIVCI  LLLSNYRILK   R+FH +  GR  V   ENP
Sbjct: 8   PPPPSPVPDYSSWSPWSISIIAIVCIVVLLLSNYRILKRWCRVFHGLFCGRSVVQFDENP 67

Query: 65  TDPSPQIHGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQLPNC 124
            DPSPQ+H HGLEASTI LLPISQFKKNE+ ESTAS NTECAVCLGEFEEGELIK LPNC
Sbjct: 68  NDPSPQVHVHGLEASTIRLLPISQFKKNEEAESTASINTECAVCLGEFEEGELIKNLPNC 127

Query: 125 NHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERVPHYQ 184
           NHSFHSSCIDAW R+HSSCPLCRL +S+ S+D  TPDSS  MLETL RE+V  ERV +YQ
Sbjct: 128 NHSFHSSCIDAWLRNHSSCPLCRLHVSNLSIDCPTPDSSSAMLETLSREDVDGERVSYYQ 187

Query: 185 TVRAQNLQHSELRRDASVQGSDQ 202
           T+RAQ LQ+ +LRRDASVQGSDQ
Sbjct: 188 TLRAQILQNPDLRRDASVQGSDQ 210

[Close]

BLAST of CcUC02G038040.1 vs. NCBI nr
Match: KAF3453818.1 (hypothetical protein FNV43_RR04259 [Rhamnella rubrinervis])

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-38
Identity = 92/197 (46.70%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 9   SPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILKRLFHRVISGRPRV-------ENPTDP 68
           SP+P  S W+PW+I+++A V I  LLLS +RIL+  F    S R +         N  DP
Sbjct: 305 SPLPVPSHWNPWAIASVATVSIIILLLSYFRILQS-FCCNFSSRNQAGSLLLSETNLDDP 364

Query: 69  SPQIHGHGLEASTIHLLPISQFK-KNEKFESTASFNTECAVCLGEFEEGELIKQLPNCNH 128
           S Q H HGLE S IH LPI+QFK +N   +     +T+CAVCLGEF+EGE ++ LPNC H
Sbjct: 365 SLQFHSHGLEVSLIHSLPITQFKEENGGSKMGHQTSTDCAVCLGEFQEGEWLRFLPNCKH 424

Query: 129 SFHSSCIDAWFRDHSSCPLCRLQISSFSL-DFSTPDSSLGMLETLGRENVLRERVPHYQT 188
           +FH SCID WF  HS+CPLCR +++ F+  D   P S   +LETL RE+  +ER  HYQ 
Sbjct: 425 AFHISCIDTWFLSHSTCPLCRSEVNGFAFEDHEYPVSMYTLLETLRREDFFQERAAHYQF 484

Query: 189 VRAQNLQHSELRRDASV 197
           +++  L +S  R ++S+
Sbjct: 485 LQSTILNNSVARTESSL 500

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BLAST of CcUC02G038040.1 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.5e-20
Identity = 70/199 (35.18%), Postives = 104/199 (52.26%), Query Frame = 0


Query: 1   MSSSPPPPSPV-----PDYSSWSPWSISTIAIVCIFFLLLSNYRILKRL---FHRV-ISG 60
           +S  PPPP P+        +S+   +++ I I+   FLL+S Y  + +    +HR+ I G
Sbjct: 13  LSFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILG 72

Query: 61  R----PRVENPTDP----SPQIHGHGLEASTIHLLPISQFKK----------NEKFESTA 120
           R     R  N  DP    SP++   GL+ S I  +PI +FKK           E  E   
Sbjct: 73  RFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEE 132

Query: 121 SFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQIS---SFSLD 169
             + EC+VCL EF++ E ++ +PNC+H FH  CID W +++++CPLCR ++S   SF  D
Sbjct: 133 KRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPD 192

[Close]

BLAST of CcUC02G038040.1 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-19
Identity = 58/182 (31.87%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 5   PPPPSPVPDYSS-------WSPWSISTIAIVCIFFLLLSNYRILKRLFHRVISGRPRVEN 64
           PPPP  V   S+       +SP  I+ I ++   FLL+S Y  + +    V S R RV  
Sbjct: 36  PPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLRGRVFG 95

Query: 65  PTD---------PSPQIHGH---------------GLEASTIHLLPISQFKKNEKFESTA 124
            +           S   HGH               GL+ + I+ + + ++++ + F  T 
Sbjct: 96  SSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHT- 155

Query: 125 SFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFST 156
              T+C+VCLGEF +GE ++ LP C+H+FH  CID W + HS+CPLCR  I+  ++  ++
Sbjct: 156 ---TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLAS 213

[Close]

BLAST of CcUC02G038040.1 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-18
Identity = 62/180 (34.44%), Postives = 93/180 (51.67%), Query Frame = 0


Query: 6   PPPSPVPDYSSWSP--------------WSISTIAIVCIFFLLLSNYRILKRL---FHRV 65
           PPP P P  +  SP               +I+ I I+   FLL+S Y  + +    +H++
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 75

Query: 66  -ISGRPRVENPTDP----SPQIHGHGLEASTIHLLPISQFKKNEKF---ESTASFNTECA 125
            I  R R  +  +P    SP     GL+ S I  +P+ +FKK +     E  +  + EC+
Sbjct: 76  DIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECS 135

Query: 126 VCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQIS---SFSLDFSTPDSS 158
           VCL EF+E E ++ +PNC H FH  CID W + +++CPLCR  +S   SF+LD  +  SS
Sbjct: 136 VCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSS 195

[Close]

BLAST of CcUC02G038040.1 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-18
Identity = 58/171 (33.92%), Postives = 88/171 (51.46%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIAIVCIFFLLLSNYRILKRLFHR--------VIS 64
           PPPPS   D       SS+SP  I+ I I+    +L+S Y ++ +  HR         ++
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLN 95

Query: 65  GRPRVENPTDPSPQI--HGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEE 124
                E     + +I  +G GL  S I  + + ++K  + F       ++C+VCL EFEE
Sbjct: 96  LNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVD----GSDCSVCLSEFEE 155

Query: 125 GELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLG 160
            E ++ LP CNH+FH  CID W + HS+CPLCR    +F    + P +S+G
Sbjct: 156 NESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR----AFVTGVNNPTASVG 198

[Close]

BLAST of CcUC02G038040.1 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 8.8e-17
Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIAIVCIFFLLLSNYRILKRLFHR----------- 64
           PPPPS   D       S +SP  I+ I I+   F+L+S Y ++ +  HR           
Sbjct: 38  PPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAA 97

Query: 65  ---------VISGRPRVEN--PTDPSPQI---HGHGLEASTIHLLPISQFKKNEKFESTA 124
                       G     N   T+P+  I    G GL+ S I  + + +++K + F    
Sbjct: 98  AINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVE-- 157

Query: 125 SFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFS 149
             +++C+VCL EF+E E ++ LP CNH+FH  CID W + HS+CPLCR  I + S
Sbjct: 158 --SSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSS 208

[Close]

BLAST of CcUC02G038040.1 vs. ExPASy TrEMBL
Match: A0A5A7V3S2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00390 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.3e-84
Identity = 162/207 (78.26%), Postives = 172/207 (83.09%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILK---RLFHRVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI IVC+ FLLLSNYR+LK   R+ H + SGRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIH HGLE S I LLPISQFKK E+ EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERV 180
           LPNCNHSFHSSCIDAWFRDHSSCPLCRLQ+ S    FSTPDSS  MLETLGREN+LRERV
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWS----FSTPDSSSAMLETLGRENILRERV 180

Query: 181 PHYQTVRAQNLQHSELRRDASVQGSDQ 202
            HYQT+RAQ LQH E RRD S+QGSDQ
Sbjct: 181 AHYQTLRAQILQHPEFRRDESIQGSDQ 203

[Close]

BLAST of CcUC02G038040.1 vs. ExPASy TrEMBL
Match: A0A1S3BIX6 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103490579 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.3e-84
Identity = 162/207 (78.26%), Postives = 172/207 (83.09%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILK---RLFHRVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI IVC+ FLLLSNYR+LK   R+ H + SGRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIH HGLE S I LLPISQFKK E+ EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERV 180
           LPNCNHSFHSSCIDAWFRDHSSCPLCRLQ+ S    FSTPDSS  MLETLGREN+LRERV
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWS----FSTPDSSSAMLETLGRENILRERV 180

Query: 181 PHYQTVRAQNLQHSELRRDASVQGSDQ 202
            HYQT+RAQ LQH E RRD S+QGSDQ
Sbjct: 181 AHYQTLRAQILQHPEFRRDESIQGSDQ 203

[Close]

BLAST of CcUC02G038040.1 vs. ExPASy TrEMBL
Match: A0A0A0KCA5 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G303210 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.3e-83
Identity = 162/208 (77.88%), Postives = 174/208 (83.65%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILK---RLFHRVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI +VCI FLLLSNYR+LK   R+ H + +GRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIHGHGLE S I LLPISQFKKNE+ EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPD-SSLGMLETLGRENVLRER 180
           LPNCNHSFHS CIDAWFR+HSSCPLCRLQ+    L FSTPD SS  MLETLGRENVLRER
Sbjct: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQV----LSFSTPDSSSSAMLETLGRENVLRER 180

Query: 181 VPHYQTVRAQNLQHSELRRDASVQGSDQ 202
           V HYQT+RAQ LQH E RRDAS+QG+DQ
Sbjct: 181 VAHYQTLRAQILQHPEFRRDASIQGTDQ 204

[Close]

BLAST of CcUC02G038040.1 vs. ExPASy TrEMBL
Match: A0A6P3Z086 (RING-type E3 ubiquitin transferase OS=Ziziphus jujuba OX=326968 GN=LOC107405104 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.2e-38
Identity = 83/180 (46.11%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 15  SSWSPWSISTIAIVCIFFLLLSNYRILKRLFHRVISGRP-----RVENPTDPSPQIHGHG 74
           S W+PW I+++A +CI  +L S  RI+K   + +   +       V NP DPS Q H HG
Sbjct: 14  SHWNPWVITSVATICIVIILFSYLRIIKTFCNNISRNQDGRRLLNVSNPDDPSLQFHSHG 73

Query: 75  LEASTIHLLPISQFKKNEKFES-TASFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCID 134
           L+ S +H LPI+QFKK+ + +S  A  N +CAVCLGEFEEGE ++ L NC H FH SCID
Sbjct: 74  LDFSFVHSLPITQFKKDNQGKSEMAQSNMDCAVCLGEFEEGEWLRHLTNCKHVFHISCID 133

Query: 135 AWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERVPHYQTVRAQNLQHS 189
            W   +S+CP+CR ++    LD     S   +LETL RE+  RER  HYQ +R+  LQ+S
Sbjct: 134 TWCLTNSNCPICRSEVYGLGLDHEYSASMYTLLETLTREDFFRERAEHYQFLRSTILQNS 193

[Close]

BLAST of CcUC02G038040.1 vs. ExPASy TrEMBL
Match: A0A061GXP2 (RING-type E3 ubiquitin transferase OS=Theobroma cacao OX=3641 GN=TCM_041911 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 90/186 (48.39%), Postives = 119/186 (63.98%), Query Frame = 0


Query: 18  SPWSISTIAIVCIFFLLLSNYRILKRL-------FHRVISGRPRV--ENPTDPSP-QIHG 77
           SPW I++IAI+CI FL+   Y  LKRL        +    G+ R+  +   DP P Q   
Sbjct: 19  SPWVIASIAIICIIFLVFRYYGELKRLCCAFTAATYSRNQGQRRLLDDGDFDPPPSQNQS 78

Query: 78  HGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCI 137
           + +E++ IH LPISQ+KK  K E   S NT+CAVCLGEFEEG+L++ LPNC H+FH SCI
Sbjct: 79  NAMESTVIHSLPISQYKKENKEEPQPS-NTDCAVCLGEFEEGDLLRHLPNCTHAFHISCI 138

Query: 138 DAWFRDHSSCPLCRLQISSFSL--DFSTPDSSLGMLETLGRENVLRERVPHYQTVRAQNL 192
           D WF+ HSSCPLCR  +S   +  + S   S   MLETL RE+  ++R  HYQ +R++ L
Sbjct: 139 DTWFQSHSSCPLCRSSVSELPIRPECSVSISMFTMLETLRREDFSQDRAAHYQMLRSEVL 198

[Close]

BLAST of CcUC02G038040.1 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-21
Identity = 70/199 (35.18%), Postives = 104/199 (52.26%), Query Frame = 0


Query: 1   MSSSPPPPSPV-----PDYSSWSPWSISTIAIVCIFFLLLSNYRILKRL---FHRV-ISG 60
           +S  PPPP P+        +S+   +++ I I+   FLL+S Y  + +    +HR+ I G
Sbjct: 13  LSFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILG 72

Query: 61  R----PRVENPTDP----SPQIHGHGLEASTIHLLPISQFKK----------NEKFESTA 120
           R     R  N  DP    SP++   GL+ S I  +PI +FKK           E  E   
Sbjct: 73  RFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEE 132

Query: 121 SFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQIS---SFSLD 169
             + EC+VCL EF++ E ++ +PNC+H FH  CID W +++++CPLCR ++S   SF  D
Sbjct: 133 KRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPD 192

[Close]

BLAST of CcUC02G038040.1 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19
Identity = 62/180 (34.44%), Postives = 93/180 (51.67%), Query Frame = 0


Query: 6   PPPSPVPDYSSWSP--------------WSISTIAIVCIFFLLLSNYRILKRL---FHRV 65
           PPP P P  +  SP               +I+ I I+   FLL+S Y  + +    +H++
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 75

Query: 66  -ISGRPRVENPTDP----SPQIHGHGLEASTIHLLPISQFKKNEKF---ESTASFNTECA 125
            I  R R  +  +P    SP     GL+ S I  +P+ +FKK +     E  +  + EC+
Sbjct: 76  DIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECS 135

Query: 126 VCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQIS---SFSLDFSTPDSS 158
           VCL EF+E E ++ +PNC H FH  CID W + +++CPLCR  +S   SF+LD  +  SS
Sbjct: 136 VCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSS 195

[Close]

BLAST of CcUC02G038040.1 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-19
Identity = 58/171 (33.92%), Postives = 88/171 (51.46%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIAIVCIFFLLLSNYRILKRLFHR--------VIS 64
           PPPPS   D       SS+SP  I+ I I+    +L+S Y ++ +  HR         ++
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLN 95

Query: 65  GRPRVENPTDPSPQI--HGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEE 124
                E     + +I  +G GL  S I  + + ++K  + F       ++C+VCL EFEE
Sbjct: 96  LNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVD----GSDCSVCLSEFEE 155

Query: 125 GELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLG 160
            E ++ LP CNH+FH  CID W + HS+CPLCR    +F    + P +S+G
Sbjct: 156 NESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR----AFVTGVNNPTASVG 198

[Close]

BLAST of CcUC02G038040.1 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 6.3e-18
Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIAIVCIFFLLLSNYRILKRLFHR----------- 64
           PPPPS   D       S +SP  I+ I I+   F+L+S Y ++ +  HR           
Sbjct: 38  PPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAA 97

Query: 65  ---------VISGRPRVEN--PTDPSPQI---HGHGLEASTIHLLPISQFKKNEKFESTA 124
                       G     N   T+P+  I    G GL+ S I  + + +++K + F    
Sbjct: 98  AINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVE-- 157

Query: 125 SFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFS 149
             +++C+VCL EF+E E ++ LP CNH+FH  CID W + HS+CPLCR  I + S
Sbjct: 158 --SSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSS 208

[Close]

BLAST of CcUC02G038040.1 vs. TAIR 10
Match: AT4G15975.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-17
Identity = 44/90 (48.89%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 59  TDPSPQIHGHGLEASTIHLLPISQFKKNEKFESTASFNTECAVCLGEFEEGELIKQLPNC 118
           TDPS      GL  S I  LPI  F        TA F  EC+VCL EF++ E  + +PNC
Sbjct: 43  TDPSST--PGGLNPSIIKSLPIFTFS-----AVTALFAMECSVCLSEFKDNESGRVMPNC 102

Query: 119 NHSFHSSCIDAWFRDHSSCPLCRLQISSFS 149
            H+FH  CID WF  HSSCPLCR  I  F+
Sbjct: 103 KHTFHVDCIDMWFHSHSSCPLCRSLIEPFA 125

The following BLAST results are available for this feature:

BLAST of CcUC02G038040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448367.1	4.7e-84	78.26	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >KAA0061954.1 RING-H...	[more]
XP_031743630.1	6.8e-83	77.88	RING-H2 finger protein ATL52-like [Cucumis sativus] >KGN47355.1 hypothetical pro...	[more]
KAG6570731.1	8.4e-81	77.83	RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_023512261.1	3.2e-80	77.34	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
KAF3453818.1	2.3e-38	46.70	hypothetical protein FNV43_RR04259 [Rhamnella rubrinervis]	[more]

BLAST of CcUC02G038040.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSW9	6.5e-20	35.18	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q7XLY8	2.5e-19	31.87	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
P93823	1.6e-18	34.44	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9LF64	4.7e-18	33.92	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SRQ8	8.8e-17	33.14	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]

BLAST of CcUC02G038040.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3S2	2.3e-84	78.26	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BIX6	2.3e-84	78.26	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103490579 PE=3 ...	[more]
A0A0A0KCA5	3.3e-83	77.88	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G303210 PE...	[more]
A0A6P3Z086	3.2e-38	46.11	RING-type E3 ubiquitin transferase OS=Ziziphus jujuba OX=326968 GN=LOC107405104 ...	[more]
A0A061GXP2	2.1e-37	48.39	RING-type E3 ubiquitin transferase OS=Theobroma cacao OX=3641 GN=TCM_041911 PE=3...	[more]

BLAST of CcUC02G038040.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43420.1	4.7e-21	35.18	RING/U-box superfamily protein	[more]
AT1G04360.1	1.1e-19	34.44	RING/U-box superfamily protein	[more]
AT5G17600.1	3.3e-19	33.92	RING/U-box superfamily protein	[more]
AT3G03550.1	6.3e-18	33.14	RING/U-box superfamily protein	[more]
AT4G15975.1	5.3e-17	48.89	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 e-value: 2.2E-7 score: 40.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 e-value: 3.2E-13 score: 49.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..141 score: 12.563043
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 70..149 e-value: 3.9E-21 score: 76.0
None	No IPR available	PANTHER	PTHR45676:SF107	RING/U-BOX SUPERFAMILY PROTEIN	coord: 14..154
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 98..141 e-value: 2.63392E-18 score: 72.7197
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 98..146
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 14..154

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G038040	CcUC02G038040	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G038040.1-exon	CcUC02G038040.1-exon-CicolChr02:33480094..33480699	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G038040.1-cds	CcUC02G038040.1-cds-CicolChr02:33480094..33480699	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G038040.1	CcUC02G038040.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane