CcUC02G038020.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC02G038020.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr02: 33472824 .. 33473400 (-)
Sequence length393
RNA-Seq ExpressionCcUC02G038020.1
SyntenyCcUC02G038020.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGTCATAATTTAACCGACGAACGATATTCATATTCCAGTAAAAGCCTCAAAGCAAAAGACTTGGACAGGAAAATTCACTGGGAATCATCATTTCGGAGCTTGGGTTAATTGGGTTTGTCGAGACGGAAAGTAAGTGGTTTCTCAGAGGAAGAAGGAATTCGACAGGTAAATTTCTCGAAAGACATTGTAAAACCTTTTGAGTTTGGTTGTTATTAGAGTGATTAAAACTTAGAATTGTTGGTTCATAGTTATGATTGCCATGATTATACACAAAAAAGCAAAACCCAATGTGCTCAATAACTCAATTCATGTCATAGGATTCTTTATTCCAGCTACCCAAGTAATCAAACCCTTCAAAATTTTCCCCAATCCCCTCCCTCCAAAACTGGTCTTTTTGATTGGTCGTTTTTACTGTATTGTTGGCATTTGAATTGGCTGTATTTCAGTGGGCTAGGATGCCCATTAGAGGCTATGAATTGTGGAGAGTTGAAGGAATGCCCACCAAGTGTTCGATAAAAGTCCCCAAAGAACTTTTTAGTGTAGGAAAAGGGTTGTCTGTTGCCAATGCGTAG

mRNA sequence

ATGGTACCTCAAAGCAAAAGACTTGGACAGGAAAATTCACTGGGAATCATCATTTCGGAGCTTGGGTTAATTGGGTTTGTCGAGACGGAAAGTAAGTGGTTTCTCAGAGGAAGAAGGAATTCGACAGTTATGATTGCCATGATTATACACAAAAAAGCAAAACCCAATGTGCTCAATAACTCAATTCATGTCATAGGATTCTTTATTCCAGCTACCCAAGTAATCAAACCCTTCAAAATTTTCCCCAATCCCCTCCCTCCAAAACTGTGGGCTAGGATGCCCATTAGAGGCTATGAATTGTGGAGAGTTGAAGGAATGCCCACCAAGTGTTCGATAAAAGTCCCCAAAGAACTTTTTAGTGTAGGAAAAGGGTTGTCTGTTGCCAATGCGTAG

Coding sequence (CDS)

ATGGTACCTCAAAGCAAAAGACTTGGACAGGAAAATTCACTGGGAATCATCATTTCGGAGCTTGGGTTAATTGGGTTTGTCGAGACGGAAAGTAAGTGGTTTCTCAGAGGAAGAAGGAATTCGACAGTTATGATTGCCATGATTATACACAAAAAAGCAAAACCCAATGTGCTCAATAACTCAATTCATGTCATAGGATTCTTTATTCCAGCTACCCAAGTAATCAAACCCTTCAAAATTTTCCCCAATCCCCTCCCTCCAAAACTGTGGGCTAGGATGCCCATTAGAGGCTATGAATTGTGGAGAGTTGAAGGAATGCCCACCAAGTGTTCGATAAAAGTCCCCAAAGAACTTTTTAGTGTAGGAAAAGGGTTGTCTGTTGCCAATGCGTAG

Protein sequence

MVPQSKRLGQENSLGIIISELGLIGFVETESKWFLRGRRNSTVMIAMIIHKKAKPNVLNNSIHVIGFFIPATQVIKPFKIFPNPLPPKLWARMPIRGYELWRVEGMPTKCSIKVPKELFSVGKGLSVANA
Homology
[Close]
BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881023.1 (structural maintenance of chromosomes protein 6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

[Close]
BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881024.1 (structural maintenance of chromosomes protein 6B-like isoform X2 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

[Close]
BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881026.1 (structural maintenance of chromosomes protein 6B-like isoform X4 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

[Close]
BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881025.1 (structural maintenance of chromosomes protein 6B-like isoform X3 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

[Close]
BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881027.1 (structural maintenance of chromosomes protein 6B-like isoform X5 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

The following BLAST results are available for this feature:
BLAST of CcUC02G038020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038881023.17.0e-0489.66structural maintenance of chromosomes protein 6-like isoform X1 [Benincasa hispi... [more]
XP_038881024.17.0e-0489.66structural maintenance of chromosomes protein 6B-like isoform X2 [Benincasa hisp... [more]
XP_038881026.17.0e-0489.66structural maintenance of chromosomes protein 6B-like isoform X4 [Benincasa hisp... [more]
XP_038881025.17.0e-0489.66structural maintenance of chromosomes protein 6B-like isoform X3 [Benincasa hisp... [more]
XP_038881027.17.0e-0489.66structural maintenance of chromosomes protein 6B-like isoform X5 [Benincasa hisp... [more]
BLAST of CcUC02G038020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G038020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G038020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC02G038020CcUC02G038020gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC02G038020.1-exonCcUC02G038020.1-exon-CicolChr02:33472824..33472949exon
CcUC02G038020.1-exonCcUC02G038020.1-exon-CicolChr02:33473008..33473147exon
CcUC02G038020.1-exonCcUC02G038020.1-exon-CicolChr02:33473231..33473351exon
CcUC02G038020.1-exonCcUC02G038020.1-exon-CicolChr02:33473395..33473400exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC02G038020.1-cdsCcUC02G038020.1-cds-CicolChr02:33472824..33472949CDS
CcUC02G038020.1-cdsCcUC02G038020.1-cds-CicolChr02:33473008..33473147CDS
CcUC02G038020.1-cdsCcUC02G038020.1-cds-CicolChr02:33473231..33473351CDS
CcUC02G038020.1-cdsCcUC02G038020.1-cds-CicolChr02:33473395..33473400CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC02G038020.1CcUC02G038020.1-proteinpolypeptide