CcUC02G036800.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G036800.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	LOB domain-containing protein
Location	CicolChr02: 32550456 .. 32551552 (+)
Sequence length	789
RNA-Seq Expression	CcUC02G036800.1
Synteny	CcUC02G036800.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTCTTAACTCTCCAAATCCAATTCTCAAGTTTAATTAAAAACCCATTAATTTACTTAAATATTGGGTTTTCTTTTTGGTATTGAAGAAGAAATTAGTTCGATACATAAAGAAGAAGAAGAAGAAGAAGATTATTGTGTATCAATATTATTAATAATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAGGACTGCATTTTTGCGCCTTATTTCCCTTCCGACGACCCTTTCAAATTCGCCATTGTTCACAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGTATCTTCTTCTTCTTCTTCATGATGTTGGGTAGGTTGGATTTCATATTCCAACCATCTAACGTTTTAAAAGTTTCATTCGTCTTTAAGATATGGTTTTTGTTTTAAGTTAGTCGTTTTTATTACATGATATAGTATTGAATTTACTTTTACCATTCGTTCAGCTTTTGAGTCGATCAAAAAATTAAGTGAAGATTAGAGAGGAAAAAAAATTGAAACTTGCATTCTAGCAACTATATTAAATGATTTTTTTAAGAATATTTGAGTTATTTAGGGGAAAAATTGAATGTGATTAACTTTTTTTATTAGGAAGTTCCAGTAGAACAGAGAGCAGATGCAGTGAACAGTATGGTATATGAAGCGAGTGCAAGAATGCGAGATCCAGTGTATGGTTGTGTAGGGACAATCTCGTTTCTACAAAATGAAGTGTCCCGATTGGAAATGCAACTCGGGGCAGCACAAGCAGAAATTTTGACTTTGCATATGCAGCAACAAGTGACTCCAACAACATTTCCGACGACGACCCACACGGATCAAGATGATCAAAATCTCGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGAATAATTTTCATATGATAATTATTATTTTTAATCAAAATGTAACAGAAAGCATATAATATATAAATATAAAAATTGATTCAAATGTTTCCAATTTTTTATTTTACACCCATTGTCCTCATTTTTGTTAGCTGTTTTTTCTAACCGACGAG

mRNA sequence

TCCCTCTTAACTCTCCAAATCCAATTCTCAAGTTTAATTAAAAACCCATTAATTTACTTAAATATTGGGTTTTCTTTTTGGTATTGAAGAAGAAATTAGTTCGATACATAAAGAAGAAGAAGAAGAAGAAGATTATTGTGTATCAATATTATTAATAATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAGGACTGCATTTTTGCGCCTTATTTCCCTTCCGACGACCCTTTCAAATTCGCCATTGTTCACAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAGTAGAACAGAGAGCAGATGCAGTGAACAGTATGGTATATGAAGCGAGTGCAAGAATGCGAGATCCAGTGTATGGTTGTGTAGGGACAATCTCGTTTCTACAAAATGAAGTGTCCCGATTGGAAATGCAACTCGGGGCAGCACAAGCAGAAATTTTGACTTTGCATATGCAGCAACAAGTGACTCCAACAACATTTCCGACGACGACCCACACGGATCAAGATGATCAAAATCTCGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGAATAATTTTCATATGATAATTATTATTTTTAATCAAAATGTAACAGAAAGCATATAATATATAAATATAAAAATTGATTCAAATGTTTCCAATTTTTTATTTTACACCCATTGTCCTCATTTTTGTTAGCTGTTTTTTCTAACCGACGAG

Coding sequence (CDS)

ATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAGGACTGCATTTTTGCGCCTTATTTCCCTTCCGACGACCCTTTCAAATTCGCCATTGTTCACAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAGTAGAACAGAGAGCAGATGCAGTGAACAGTATGGTATATGAAGCGAGTGCAAGAATGCGAGATCCAGTGTATGGTTGTGTAGGGACAATCTCGTTTCTACAAAATGAAGTGTCCCGATTGGAAATGCAACTCGGGGCAGCACAAGCAGAAATTTTGACTTTGCATATGCAGCAACAAGTGACTCCAACAACATTTCCGACGACGACCCACACGGATCAAGATGATCAAAATCTCGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGA

Protein sequence

MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTTFPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT

Homology

[Close]

BLAST of CcUC02G036800.1 vs. NCBI nr
Match: XP_038902597.1 (LOB domain-containing protein 12 [Benincasa hispida])

HSP 1 Score: 276.2 bits (705), Expect = 1.8e-70
Identity = 141/160 (88.12%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           M  GSSPCASCKLLRRRCAKDCIFAPYFP DDP KFAIVHKIFGASNVSKMLQEV VEQR
Sbjct: 1   MRIGSSPCASCKLLRRRCAKDCIFAPYFPPDDPLKFAIVHKIFGASNVSKMLQEVSVEQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 120
            DAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLE+QLGAAQAEILTL MQQQ  P T
Sbjct: 61  TDAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEIQLGAAQAEILTLQMQQQQAPMT 120

Query: 121 FPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
             TTT  DQDDQNLVIFSN DSSNSFH FQE  DYYPLWT
Sbjct: 121 --TTTQMDQDDQNLVIFSNVDSSNSFHTFQEMEDYYPLWT 158

[Close]

BLAST of CcUC02G036800.1 vs. NCBI nr
Match: XP_008463841.1 (PREDICTED: LOB domain-containing protein 12-like [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-69
Identity = 135/161 (83.85%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFP +DP KFAIVHKIFGASNVSKMLQEVP++QR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 120
           ADAV+SMVYEASARM+DPVYGCVGTI+FLQNEVSRLE+QLGAAQAEILTL M+QQ T TT
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120

Query: 121 FP-TTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
           FP TTT  DQD+QNL+IFSN DSSNS HIFQ   DYY +WT
Sbjct: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161

[Close]

BLAST of CcUC02G036800.1 vs. NCBI nr
Match: XP_004143222.1 (LOB domain-containing protein 12 [Cucumis sativus] >KGN47050.1 hypothetical protein Csa_021050 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 2.3e-65
Identity = 132/162 (81.48%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFP  DP KFAIVHKIFGASNVSKMLQEVPV+QR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHM-QQQVTPT 120
           ADAV+SMVYEASARM+DPVYGCVG I FLQNEVS+LE+QLGAA+AEIL L M QQQ    
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120

Query: 121 TFP-TTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
           TFP TTT  DQD+QNL+I SNADSSNSFH+FQ   D+YPLWT
Sbjct: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 162

[Close]

BLAST of CcUC02G036800.1 vs. NCBI nr
Match: XP_023533075.1 (LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.8 bits (621), Expect = 1.0e-60
Identity = 124/160 (77.50%), Postives = 134/160 (83.75%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFP DDP+KFAIVHKIFGASNVSKMLQE+P++QR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 120
            DAVNSMVYEASARMRDPVYGCVG I+FLQN+VSRLEMQL AAQAEIL+  MQQQ  P +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
           FP  T  +Q DQNLV  SNADS NS     E  DY  LW+
Sbjct: 121 FP-MTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CcUC02G036800.1 vs. NCBI nr
Match: XP_022947802.1 (LOB domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 242.3 bits (617), Expect = 2.9e-60
Identity = 124/160 (77.50%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFP DDP KFAIVHKIFGASNVSKMLQE+P++QR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 120
            DAVNSMVYEASARMRDPVYGCVG I+FLQN+VSRLEMQL AAQAEIL+  MQQQ  P +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
           FP  T  +Q DQNLV  SNADS NS     E  DY  LW+
Sbjct: 121 FP-MTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-50
Identity = 98/138 (71.01%), Postives = 115/138 (83.33%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRA 61
           G GSSPCASCKLLRRRCAKDCIFAPYFP DDP KFAIVHK+FGASNVSKMLQE+PV QRA
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTTF 121
           DAVNS+V+EA+AR+RDPVYGCVG IS+LQN+VS+L+MQL  AQAEIL + MQ + T  + 
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSH 122

Query: 122 PTTTHTDQDDQNLVIFSN 140
                 DQD + L++ +N
Sbjct: 123 HQVLELDQDHKALLLNNN 140

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.5e-40
Identity = 77/118 (65.25%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH++FGASNV+KMLQE+P+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  NSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTTFP 123
           +SMVYEA+AR+RDPVYGCVG IS LQ ++  L+ QL  AQAE++ L ++Q    T FP
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS---TNFP 125

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.0e-37
Identity = 82/160 (51.25%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKD-CIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 61
           G   SPCA CKLLRR+C KD C+FAPYFP+ +P+KFAIVHKIFGASNV+KMLQE+    R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 62  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 121
           +DAV+SMVYEA+AR++DPVYGCVGTIS L  ++  L+ QL  AQAE++ +    ++    
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 122 FPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
            P T  T     N   +S+ D + ++    + GD+  LW+
Sbjct: 129 PPYTASTVTFPSNKDFYSDIDMAVAY--TDDAGDF--LWS 164

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-35
Identity = 68/109 (62.39%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAVN 65
           SPCA+CK+LRRRCA  C+ APYFP  DP KF I H++FGASN+ K LQE+P  QR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQ 115
           SMVYEA ARMRDPVYGC G I  LQ +VS L+ QL   Q E++ + +Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.4e-35
Identity = 78/163 (47.85%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAVN 65
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H++FGASN+ K LQE+P  QR DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQ-QVTPTTFPTT 125
           SMVYEA AR+RDPVYGC G I  LQ +VS L+ QL  AQ E++ +  Q+  +    +   
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMD 151

Query: 126 THTDQDDQNLVIFSN-------ADSSNSFHIFQEEGDYYPLWT 161
               Q+  N+   SN         ++NS  ++ +     PLWT
Sbjct: 152 QQQKQEQDNMSFESNDLGFLEDKSNTNSSMLWWD-----PLWT 189

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy TrEMBL
Match: A0A1S3CKM4 (LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 135/161 (83.85%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFP +DP KFAIVHKIFGASNVSKMLQEVP++QR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 120
           ADAV+SMVYEASARM+DPVYGCVGTI+FLQNEVSRLE+QLGAAQAEILTL M+QQ T TT
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120

Query: 121 FP-TTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
           FP TTT  DQD+QNL+IFSN DSSNS HIFQ   DYY +WT
Sbjct: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy TrEMBL
Match: A0A0A0KBK5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 132/162 (81.48%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFP  DP KFAIVHKIFGASNVSKMLQEVPV+QR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHM-QQQVTPT 120
           ADAV+SMVYEASARM+DPVYGCVG I FLQNEVS+LE+QLGAA+AEIL L M QQQ    
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120

Query: 121 TFP-TTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
           TFP TTT  DQD+QNL+I SNADSSNSFH+FQ   D+YPLWT
Sbjct: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 162

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy TrEMBL
Match: A0A6J1G7F7 (LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451558 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.4e-60
Identity = 124/160 (77.50%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFP DDP KFAIVHKIFGASNVSKMLQE+P++QR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 120
            DAVNSMVYEASARMRDPVYGCVG I+FLQN+VSRLEMQL AAQAEIL+  MQQQ  P +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
           FP  T  +Q DQNLV  SNADS NS     E  DY  LW+
Sbjct: 121 FP-MTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy TrEMBL
Match: A0A6J1L5Y7 (LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111499469 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 123/160 (76.88%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFP DDP+KFAIVHKIFGASNVSKMLQE+P++QR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 120
            DAVNSMVYEASARMRDPVYGCVG I+FLQN+VSRLEMQL AAQAEIL+  MQQQ    +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASAS 120

Query: 121 FPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
           FP  T  +Q DQNLV  SNADS NS     E  DY  LW+
Sbjct: 121 FP-MTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CcUC02G036800.1 vs. ExPASy TrEMBL
Match: A0A6N2C088 (LOB domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003850 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.1e-52
Identity = 102/147 (69.39%), Postives = 125/147 (85.03%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFP DDP KFAIVHK+FGASN+SKMLQE+P++QR
Sbjct: 1   MGTGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPIQQR 60

Query: 61  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 120
           ADAV+S+VYEA+AR+RDPVYGCVG ISFLQN+VS+L+MQL  AQAEIL + MQQ+  P +
Sbjct: 61  ADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAQAEILCIQMQQEPVPCS 120

Query: 121 FPTTTHTDQDDQNLVIFSNADSSNSFH 148
            PTT    + D++    SN +++N+F+
Sbjct: 121 LPTTLMEQELDKSPYGISNNNNNNNFN 147

[Close]

BLAST of CcUC02G036800.1 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-51
Identity = 98/138 (71.01%), Postives = 115/138 (83.33%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRA 61
           G GSSPCASCKLLRRRCAKDCIFAPYFP DDP KFAIVHK+FGASNVSKMLQE+PV QRA
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTTF 121
           DAVNS+V+EA+AR+RDPVYGCVG IS+LQN+VS+L+MQL  AQAEIL + MQ + T  + 
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSH 122

Query: 122 PTTTHTDQDDQNLVIFSN 140
                 DQD + L++ +N
Sbjct: 123 HQVLELDQDHKALLLNNN 140

[Close]

BLAST of CcUC02G036800.1 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-41
Identity = 77/118 (65.25%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH++FGASNV+KMLQE+P+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  NSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTTFP 123
           +SMVYEA+AR+RDPVYGCVG IS LQ ++  L+ QL  AQAE++ L ++Q    T FP
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS---TNFP 125

[Close]

BLAST of CcUC02G036800.1 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-38
Identity = 82/160 (51.25%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKD-CIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQR 61
           G   SPCA CKLLRR+C KD C+FAPYFP+ +P+KFAIVHKIFGASNV+KMLQE+    R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 62  ADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTT 121
           +DAV+SMVYEA+AR++DPVYGCVGTIS L  ++  L+ QL  AQAE++ +    ++    
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 122 FPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
            P T  T     N   +S+ D + ++    + GD+  LW+
Sbjct: 129 PPYTASTVTFPSNKDFYSDIDMAVAY--TDDAGDF--LWS 164

[Close]

BLAST of CcUC02G036800.1 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-36
Identity = 68/109 (62.39%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAVN 65
           SPCA+CK+LRRRCA  C+ APYFP  DP KF I H++FGASN+ K LQE+P  QR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQ 115
           SMVYEA ARMRDPVYGC G I  LQ +VS L+ QL   Q E++ + +Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

[Close]

BLAST of CcUC02G036800.1 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-36
Identity = 78/163 (47.85%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAVN 65
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H++FGASN+ K LQE+P  QR DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQ-QVTPTTFPTT 125
           SMVYEA AR+RDPVYGC G I  LQ +VS L+ QL  AQ E++ +  Q+  +    +   
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMD 151

Query: 126 THTDQDDQNLVIFSN-------ADSSNSFHIFQEEGDYYPLWT 161
               Q+  N+   SN         ++NS  ++ +     PLWT
Sbjct: 152 QQQKQEQDNMSFESNDLGFLEDKSNTNSSMLWWD-----PLWT 189

The following BLAST results are available for this feature:

BLAST of CcUC02G036800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902597.1	1.8e-70	88.13	LOB domain-containing protein 12 [Benincasa hispida]	[more]
XP_008463841.1	2.6e-69	83.85	PREDICTED: LOB domain-containing protein 12-like [Cucumis melo]	[more]
XP_004143222.1	2.3e-65	81.48	LOB domain-containing protein 12 [Cucumis sativus] >KGN47050.1 hypothetical prot...	[more]
XP_023533075.1	1.0e-60	77.50	LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947802.1	2.9e-60	77.50	LOB domain-containing protein 12-like [Cucurbita moschata]	[more]

BLAST of CcUC02G036800.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBW3	1.7e-50	71.01	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	4.5e-40	65.25	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9SA51	8.0e-37	51.25	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q9SK08	2.0e-35	62.39	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q9LQR0	3.4e-35	47.85	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]

BLAST of CcUC02G036800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKM4	1.3e-69	83.85	LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE...	[more]
A0A0A0KBK5	1.1e-65	81.48	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=3 SV...	[more]
A0A6J1G7F7	1.4e-60	77.50	LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451...	[more]
A0A6J1L5Y7	4.1e-60	76.88	LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC11149946...	[more]
A0A6N2C088	9.1e-52	69.39	LOB domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003850 PE=3 S...	[more]

BLAST of CcUC02G036800.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30130.1	1.2e-51	71.01	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	3.2e-41	65.25	LOB domain-containing protein 4	[more]
AT1G16530.1	5.7e-38	51.25	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G28500.1	1.4e-36	62.39	LOB domain-containing protein 11	[more]
AT1G07900.1	2.4e-36	47.85	LOB domain-containing protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..126
None	No IPR available	PANTHER	PTHR31301:SF97	LOB DOMAIN-CONTAINING PROTEIN 12-LIKE	coord: 1..126
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 7..104 e-value: 1.6E-40 score: 137.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 6..107 score: 26.303682

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G036800	CcUC02G036800	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G036800.1-exon	CcUC02G036800.1-exon-CicolChr02:32550456..32550771	exon
CcUC02G036800.1-exon	CcUC02G036800.1-exon-CicolChr02:32551080..32551552	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G036800.1-five_prime_utr	CcUC02G036800.1-five_prime_utr-CicolChr02:32550456..32550612	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G036800.1-cds	CcUC02G036800.1-cds-CicolChr02:32550613..32550771	CDS
CcUC02G036800.1-cds	CcUC02G036800.1-cds-CicolChr02:32551080..32551403	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G036800.1-three_prime_utr	CcUC02G036800.1-three_prime_utr-CicolChr02:32551404..32551552	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G036800.1	CcUC02G036800.1-protein	polypeptide