CcUC02G035930.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G035930.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 31763314 .. 31765595 (+)
Sequence length	225
RNA-Seq Expression	CcUC02G035930.1
Synteny	CcUC02G035930.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTAATTATTGTCATTGTTTTATCCATCGCATAATTCAAATTATATAAATAGTGAATGCCATTTATACAAGCCGTGCTTTATTGGTTTCACATAATGAACTTCTTTGGTAAGCATATAGATGAGGTTACACCAAACTTATGTTTATAATTCCCGGTTAGATATTCATTTTGGTTATATTCGCAAATCATTTAAATTTTTTTGTTTTTATTTTTGAAAATTAAGCCAAATAAACATCCTTTTACTTCTAAATTCTTTTGATTTATTATCTACTTTCTACCAATTTTTAAAAACTTAAAAAAAAAATTCTTTTAAAAGCTTGATTTTGTTTTTGAAATTTAGCTAAGACTTCAACTCTTTTATTTAAGAAAGATGAAAATCATTGAAAGAAATTGAAAAGAAATAGGTTTAATTTACAAAAAAATAAATAGTTATCAAATGGAACCTTTATTTTTCATTTTTATAGTTGATGGAAAGTGTGTGCTTTGTTTTCTGATAATTTTTTATAATGATTTTCATCTTTCTAAATGGTGGTAGATAACATAACAAACAAAAAAATAAAAATAAAAATAATAGTAATACTACATAAATTTAACTTTCAACAACCAAGAAAGTGGGGTTACTATTCAAGTTAGGTTTGGTTCTTGACAACTCTAACTATACTGGTTAGGCTTAAGCATGATATTAAATTTTTATCAATATGTCGACATTTTCATATTTTCATGGGTAAACATCGACATGATGGATGAATAATATTTTCATTATATCATAAAAAAAATTATTAAACATAAAAAGTAAGCAACAAAATGATACAAATGTGAATATAATATTAATAATTAAATATTTTAACTTATTTAAGAAACATAAAATTATTTATTTAATGTAAATATATTTTTACGTTTTTTTTAGACTTACCCATAGACGTCAACATTTCAATAAAATTGAGACTTCAAAACTTCTATCAACATCGATATTTTAAAATATAAACTCAAGAAGCTAAACACATCATAGTCAATGTTCTAACACTCCATACTATGCTTTCATATATATACACTAACAAAATTGGACTTATGCCAAACCGAACATAGCTCAATTAGGCATATGAGTATTAGTAACCATGAAGTCTATAGCTCAAATTCTCTTATATTCTCCAATTGTACTATTAAAAATAAAAAAATAATAATAATAAAAAAAACAAACAAAGTTGGGCTTATATATATGGGTTTCCAATGGGCTTGAAACTTATGAAACTTTCAATATACCACACATATTTGTACTTTACTGTCTATTTTAAACTTTTAAGTCTATGAAATTGACTTATACCAATAGAAAAATATTGTCCTTACTTGTACACGCGTGAGATTATTTATTTATTTATGTTTGATGTAAGACAATGTTCGCATCTACGACGTTAAGATTTCGTTTGAAAAGGGTTGGTTTATAGAAAAGAAAAGAATCTGTTTGAATAGAGATGGCTTCTCTCAACCACCAAAATTACAAGTAGGGGAAGAAAAGGTTAAAAGAAAGAATCCATGAAAGCCTCTTTGTAAAACACATCAAGAAGCCAATAAGTCACCCACAGAATGGTTCACCCACTTCTCAAGGCTCTTCCTTAGTGCTGTCTTAACACATCCCAAAACCCTAGTGTGACCCCTCCAAATTTCTCATGCATCTTTAATTTTGAGGCCAAAATTAGGGCCAACAAATCAAACCCACTTTTTCATTTATATATTTGACTTTTAGTTTGAAGCACACTCCCGACCCGATTTGAAAGACAATTGCAACTATAGTAATTAGACTCAAAATATTGACCGATATAATATAATATAAAATAATTTGGCTTGGATTTTTAAAAATATTGAAAAGTAGGTGATAAATCAAGAAATTTGTTGGTGAAAAGGGCGTTTATAAGTTTAACTTACAAAAACAAAAAACCAAAAACTAAATAATTAATTAAGTTTTGAAATTTGTAAAGAGTGATTCGTCTTTAGAATTTAACTATATAAATTCAAATGTTTTTTTAAAAAAGATAAGTCAATGTAAAGAATAACGGTGAGAAAATTAAACACAAACCCGAAATCAAATAGTCATCCAATCAGACAATCTAACTTAACTCTTTTTCTTTTTTTTTTTCTCTCTCTCTCTCTGTTTTTTTTCCATATATTTATGATGAGGTAGTAATTAGGTAACTCATGGGAAGCTTGGTCAAACTCCAAAGGGCTCTCTGACTGGCAACACAGAGACTACAGAAGCACATCCTAAAAAGCAATCAAATTGA

mRNA sequence

ATGAAAAACAATGTTCGCATCTACGACGTTAAGATTTCGTTTGAAAAGGGTTGGTTTATAGAAAAGAAAAGAATCTGTTTGAATAGAGATGGCTTCTCTCAACCACCAAAATTACAAGTAGGGGAAGAAAAGGTAACTCATGGGAAGCTTGGTCAAACTCCAAAGGGCTCTCTGACTGGCAACACAGAGACTACAGAAGCACATCCTAAAAAGCAATCAAATTGA

Coding sequence (CDS)

ATGAAAAACAATGTTCGCATCTACGACGTTAAGATTTCGTTTGAAAAGGGTTGGTTTATAGAAAAGAAAAGAATCTGTTTGAATAGAGATGGCTTCTCTCAACCACCAAAATTACAAGTAGGGGAAGAAAAGGTAACTCATGGGAAGCTTGGTCAAACTCCAAAGGGCTCTCTGACTGGCAACACAGAGACTACAGAAGCACATCCTAAAAAGCAATCAAATTGA

Protein sequence

MKNNVRIYDVKISFEKGWFIEKKRICLNRDGFSQPPKLQVGEEKVTHGKLGQTPKGSLTGNTETTEAHPKKQSN

Homology

The following BLAST results are available for this feature:

BLAST of CcUC02G035930.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G035930.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G035930.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G035930.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G035930	CcUC02G035930	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G035930.1-exon	CcUC02G035930.1-exon-CicolChr02:31763314..31763320	exon
CcUC02G035930.1-exon	CcUC02G035930.1-exon-CicolChr02:31764708..31764832	exon
CcUC02G035930.1-exon	CcUC02G035930.1-exon-CicolChr02:31765503..31765595	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G035930.1-cds	CcUC02G035930.1-cds-CicolChr02:31763314..31763320	CDS
CcUC02G035930.1-cds	CcUC02G035930.1-cds-CicolChr02:31764708..31764832	CDS
CcUC02G035930.1-cds	CcUC02G035930.1-cds-CicolChr02:31765503..31765595	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G035930.1	CcUC02G035930.1-protein	polypeptide