CcUC02G035440.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G035440.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 31242159 .. 31244002 (-)
Sequence length	435
RNA-Seq Expression	CcUC02G035440.1
Synteny	CcUC02G035440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGAAGTACATAAACCTGAATGCAACTCCTATCACAGAAACCAAACAATTCAGAAACATTTTCAAAGGAGTAAATTGAGACCATAGGTGCTAAGATATTAAACAGTACTTCCAATTTAAAATTTATGTAAATGCAAATCAGATGTAGTGGCCTTTGATGACTAACCTCTTGTAAAGCATGACGAAAAAGTTCAATGGGGGTTGCAGTTTTTGCTATTTGATGAGCAGATGTCTTCTTCAGTAGCTACAATGTGGTACAGAGAAATCGTATCATGATAAGCTGCATTTCCAAATAAATCATTTCAAAACAAAGACGCTCGTATTTGTTCGCTAATGTGTATACATTAGATACTTGAACTAACTTTGGGCTACAATAAAAGAATAGACAAAGAATTAAGCATATTTATCTGGTAGCATAATAATCTATTAATAATTAAAGAAATAATCTTTTTTTAAAAATAATAATAATAATAAAAATAAATAAATAAATAAATAAATAAAAGAAAAGAATAATCATATTGATTAGGTAAGTAAAAACCATATCAATATGATGAATAAAAAACCAATGACACCATATATCCCAATTGTACTTCAGCCTCAAAAGAACTAGAAGGATATTGGCATTTGTATACATGCTTCACAAAATTACAACATTTTAATGTTTGCTATATATTGTAAAATTCAATGCTTAAACTGCATCATCCATGAAATTAATCAAGAATATTAATAAAGAAAACGTGCACGCCAAAAAATGAAAAGTATAAGTAACAGAGGCTCTGTAAAAGAGGATGATATTTCATATTGCTATATGGAAATATAATATGGCAATACAATGTTCAACTCATCACCAGAAGACAAAAATATTGGGAAGCAATTATTTTCACTGAACTTCCATTAGCAATCAGCATTAGTGATGGCAAGTTCACTTTGCAGTCTTAGTTAATGATCATTCTTGGATAAGTCTAACTATGGGTGCTTCGAATTTCAAACACTGACATCACCACATTGTCATGTCCAGCGTCTAATTCTATAAATAGACCAAAATTTTCTTCTAGACCAATAAAACACAATTGATAATCCGGACATCGAAGAGTTAATATCTTCCATCGCTTTCTCAGTTATATATTGCATTTAACTAGAATCTTAAACTCAGCTGCTCTAAGGACAAAAAATAGACTTAAGAAACGTAGTAATGCTATAAATCGATAATAGTGGCAGCATTCAGGAACAAGACAAATCACCAATGGAATTTGAAGATAAGAGGTCGAAAAAGGTAGTAATCTTATTCATCATCCAGTAAATGATTGAATACGCTATAAGCACACACAAAGCAAGGCATTTAAACAGCACAATACAAGTAAAACGATCGAAACTTTTCCTATCTCAGAAATAGTGTCGGAATTTTCTCAAGACCGAAAGTAAGGAATGCAGGAGACAGTATAAAGTCATCAATCGCAACAAACGGAGCATAAAAACGCGTGAATTACAGAAAACAAACCTTGTCAAGCAAGAAGTTAGGAAACAGCTGGTCGGAGGTGAGATGTTGAGCACAGCAAGGGCAATCACTCTTGTTGCGAAGATGAGTGATGATACACATGTAGCAGAAACTGTGACCGCAGGCAGTGAGGAACGCATCCCTAATGATCTGCATGCAAATTGGGCAGAGAAAGTCCTTATCCAACTGAGGTGAAGCCTCGACGACGGTGTCGAGCTCGGAAAGTGAGCAATCGGGAATTGACGGCGCTGAAATCGACGAAGACGCAGGCTCCGTCTTCACCGCCGGAACTAAGGCTCCGGTTGATCCTTCGTCCATCTACTTTTCTGAGGACCGAGTTGTCTGA

mRNA sequence

ATGCATGAAGAACAAGACAAATCACCAATGGAATTTGAAGATAAGAGGTCGAAAAAGTGTCGGAATTTTCTCAAGACCGAAAGTAAGGAATGCAGGAGACAGTATAAAGTCATCAATCGCAACAAACGGAGCATAAAAACGCGTGAATTACAGAAAACAAACCTTGTCAAGCAAGAAGTTAGGAAACAGCTGGTCGGAGGTGAGATGTTGAGCACAGCAAGGGCAATCACTCTTGTTGCGAAGATGAGTGATGATACACATGTAGCAGAAACTGTGACCGCAGGCACCTCGACGACGGTGTCGAGCTCGGAAAGTGAGCAATCGGGAATTGACGGCGCTGAAATCGACGAAGACGCAGGCTCCGTCTTCACCGCCGGAACTAAGGCTCCGGTTGATCCTTCGTCCATCTACTTTTCTGAGGACCGAGTTGTCTGA

Coding sequence (CDS)

ATGCATGAAGAACAAGACAAATCACCAATGGAATTTGAAGATAAGAGGTCGAAAAAGTGTCGGAATTTTCTCAAGACCGAAAGTAAGGAATGCAGGAGACAGTATAAAGTCATCAATCGCAACAAACGGAGCATAAAAACGCGTGAATTACAGAAAACAAACCTTGTCAAGCAAGAAGTTAGGAAACAGCTGGTCGGAGGTGAGATGTTGAGCACAGCAAGGGCAATCACTCTTGTTGCGAAGATGAGTGATGATACACATGTAGCAGAAACTGTGACCGCAGGCACCTCGACGACGGTGTCGAGCTCGGAAAGTGAGCAATCGGGAATTGACGGCGCTGAAATCGACGAAGACGCAGGCTCCGTCTTCACCGCCGGAACTAAGGCTCCGGTTGATCCTTCGTCCATCTACTTTTCTGAGGACCGAGTTGTCTGA

Protein sequence

MHEEQDKSPMEFEDKRSKKCRNFLKTESKECRRQYKVINRNKRSIKTRELQKTNLVKQEVRKQLVGGEMLSTARAITLVAKMSDDTHVAETVTAGTSTTVSSSESEQSGIDGAEIDEDAGSVFTAGTKAPVDPSSIYFSEDRVV

Homology

The following BLAST results are available for this feature:

BLAST of CcUC02G035440.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G035440.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G035440.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G035440.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G035440	CcUC02G035440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G035440.1-exon	CcUC02G035440.1-exon-CicolChr02:31242159..31242307	exon
CcUC02G035440.1-exon	CcUC02G035440.1-exon-CicolChr02:31242378..31242606	exon
CcUC02G035440.1-exon	CcUC02G035440.1-exon-CicolChr02:31242727..31242774	exon
CcUC02G035440.1-exon	CcUC02G035440.1-exon-CicolChr02:31243994..31244002	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G035440.1-cds	CcUC02G035440.1-cds-CicolChr02:31242159..31242307	CDS
CcUC02G035440.1-cds	CcUC02G035440.1-cds-CicolChr02:31242378..31242606	CDS
CcUC02G035440.1-cds	CcUC02G035440.1-cds-CicolChr02:31242727..31242774	CDS
CcUC02G035440.1-cds	CcUC02G035440.1-cds-CicolChr02:31243994..31244002	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G035440.1	CcUC02G035440.1-protein	polypeptide