CcUC02G031680.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G031680.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	tRNA-specific 2-thiouridylase
Location	CicolChr02: 27441683 .. 27442323 (+)
Sequence length	641
RNA-Seq Expression	CcUC02G031680.1
Synteny	CcUC02G031680.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAGGGGAGCCTCACCCATAACTCTATAAATTTGTGCAATCTTCTCTGTGTGTTTCAAACTTGGATATCCGCAACGGGTTCACAAACAGAGTACTAATTTTCTTTTGTTGCCAATTCCTTTGAGTTTAGCTCAACTGGTTTTAAGCATATACTTTCAACGTAAGAGGTTAAAGGTTTGATTCATGATCTATAACGTCAGGCAAATGGGTGTTCTGGAGATTGCTGGCATTGGAGGACGTCGATGGGATTACTATGAGAAGCTGTATAGTGGAGGAAATAGGGTGGTTAAGCGTAGACCACGTCGATGGATGAAAAAAATATTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGACTTACAAGGTTGAGGAGTTTTGGTTTAAAGGTATCATTTTTAATCTTATTGTCAAGAAGAATTAGGGAGATTGTCAATAGAATGAAGGTTGTTGAAGATGTATGTCCTAATATCATCTTCTCTACTCAATGGGGACTTCCTGTTTTATCTTATATATAATTCCTCTTCCAAGTTGTTTGTTGCTTTGACTCATGTTTTTATTAATGGCTGGATTATTCATGTAACTTTTGGTTATATATGTAATGTATAAAATGGAATATTACAGGACTGTGTTTACTTCTTTC

mRNA sequence

CATAGGGGAGCCTCACCCATAACTCTATAAATTTGTGCAATCTTCTCTGTGTGTTTCAAACTTGGATATCCGCAACGGGTTCACAAACAGAGTACTAATTTTCTTTTGTTGCCAATTCCTTTGAGTTTAGCTCAACTGGTTTTAAGCATATACTTTCAACGTAAGAGGTTAAAGGTTTGATTCATGATCTATAACGTCAGGCAAATGGGTGTTCTGGAGATTGCTGGCATTGGAGGACGTCGATGGGATTACTATGAGAAGCTGTATAGTGGAGGAAATAGGGTGGTTAAGCGTAGACCACGTCGATGGATGAAAAAAATATTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGACTTACAAGGTTGAGGAGTTTTGGTTTAAAGGTATCATTTTTAATCTTATTGTCAAGAAGAATTAGGGAGATTGTCAATAGAATGAAGGTTGTTGAAGATGTATGTCCTAATATCATCTTCTCTACTCAATGGGGACTTCCTGTTTTATCTTATATATAATTCCTCTTCCAAGTTGTTTGTTGCTTTGACTCATGTTTTTATTAATGGCTGGATTATTCATGTAACTTTTGGTTATATATGTAATGTATAAAATGGAATATTACAGGACTGTGTTTACTTCTTTC

Coding sequence (CDS)

ATGGGTGTTCTGGAGATTGCTGGCATTGGAGGACGTCGATGGGATTACTATGAGAAGCTGTATAGTGGAGGAAATAGGGTGGTTAAGCGTAGACCACGTCGATGGATGAAAAAAATATTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGACTTACAAGGTTGAGGAGTTTTGGTTTAAAGGTATCATTTTTAATCTTATTGTCAAGAAGAATTAGGGAGATTGTCAATAGAATGAAGGTTGTTGAAGATGTATGTCCTAATATCATCTTCTCTACTCAATGGGGACTTCCTGTTTTATCTTATATATAA

Protein sequence

MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSYI

Homology

[Close]

BLAST of CcUC02G031680.1 vs. NCBI nr
Match: KGN61039.1 (hypothetical protein Csa_021124 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MGVLEIAGIGGRRWD-YYEKLYSGG-NRVVKRRPRRWMKKILKRGMKGFRLYRLTRLR-S 60
           M +LEIAGIGGRRW+ +YEKL SGG NRVV  R RRW+KK+LKRGMKGFRLYR TRL+ S
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  FGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSYI 104
           FGLKVSFL+ LSRRIREIV+RMKVVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

[Close]

BLAST of CcUC02G031680.1 vs. NCBI nr
Match: KAA0056096.1 (hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ96421.1 hypothetical protein E5676_scaffold546G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 3.6e-35
Identity = 89/110 (80.91%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MGVLEIAGIGGRRWD-YYEKLYSGG---NRVVK--RRPRRWMKKILKRGMKGFRLYRLTR 60
           MG+LEIAGIGGRRW+ +YEKL S G   NRVV    R RRW+KK+LKRGMKGFRLYR TR
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  LR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSYI 104
           LR SFGLKVSFL+ LSRRIREIVNRMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110

[Close]

BLAST of CcUC02G031680.1 vs. NCBI nr
Match: KAG6599155.1 (Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-32
Identity = 80/102 (78.43%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGL 60
           MG+LE AGIGGRRW+ YEKL+   N VVK R RRWMKK LKRG KGFRLYRLTR RSF L
Sbjct: 452 MGLLETAGIGGRRWNQYEKLHCEDNDVVKCR-RRWMKKTLKRGKKGFRLYRLTRSRSFCL 511

Query: 61  KVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSY 103
           KVSFL+L+SRRIREIVNRMK VEDVC N+IF TQWGLP LSY
Sbjct: 512 KVSFLVLMSRRIREIVNRMK-VEDVCANVIFFTQWGLPTLSY 551

[Close]

BLAST of CcUC02G031680.1 vs. NCBI nr
Match: KAE9446725.1 (hypothetical protein C3L33_21367, partial [Rhododendron williamsianum])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 4   LEIAGIGGRRWDY-YEKLYSGGNRVVKRRP-RRWMKKILKRGMKGFRLYRLTRLRSFGLK 63
           +EI+ + G RW   YEKL    +     RP RRW  K+  R    FR  RL R R    +
Sbjct: 128 IEISDVVGGRWRIRYEKLTGIDHEKAAARPRRRWAMKMNGR----FRGIRLPRCRKLNWR 187

Query: 64  VSFLILLSRRIR----EIVNRMKVVEDVCPNIIFSTQWGLPVLSY 103
              +++  +RI     EI+NRMK+++D+CP I+FS  WGLPVLS+
Sbjct: 188 AFAILMSPKRIAEMYGEIINRMKMMDDICPGIVFSGHWGLPVLSH 228

[Close]

BLAST of CcUC02G031680.1 vs. NCBI nr
Match: OAY43889.1 (hypothetical protein MANES_08G105911v8 [Manihot esculenta])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1   MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGL 60
           MG+ +I G+  R    YEKL S   ++ K R R W+KK L  G+KG RL R  +L    L
Sbjct: 1   MGIQDIIGLQLRY--RYEKLISSDEKLAKSRRRSWVKK-LNGGLKGLRLSRSRKLTFKAL 60

Query: 61  KVSFL-ILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSY 103
            V  L   ++R   +I++R+K +ED+ PNIIFSTQ GLPVLS+
Sbjct: 61  SVMVLPSRIARVYADIISRIK-IEDLYPNIIFSTQLGLPVLSH 99

[Close]

BLAST of CcUC02G031680.1 vs. ExPASy TrEMBL
Match: A0A0A0LJ29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.0e-37
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MGVLEIAGIGGRRWD-YYEKLYSGG-NRVVKRRPRRWMKKILKRGMKGFRLYRLTRLR-S 60
           M +LEIAGIGGRRW+ +YEKL SGG NRVV  R RRW+KK+LKRGMKGFRLYR TRL+ S
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  FGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSYI 104
           FGLKVSFL+ LSRRIREIV+RMKVVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

[Close]

BLAST of CcUC02G031680.1 vs. ExPASy TrEMBL
Match: A0A5D3BCS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00490 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 89/110 (80.91%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MGVLEIAGIGGRRWD-YYEKLYSGG---NRVVK--RRPRRWMKKILKRGMKGFRLYRLTR 60
           MG+LEIAGIGGRRW+ +YEKL S G   NRVV    R RRW+KK+LKRGMKGFRLYR TR
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  LR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSYI 104
           LR SFGLKVSFL+ LSRRIREIVNRMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110

[Close]

BLAST of CcUC02G031680.1 vs. ExPASy TrEMBL
Match: A0A2C9VF51 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G106000 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.2e-08
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1   MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGL 60
           MG+ +I G+  R    YEKL S   ++ K R R W+KK L  G+KG RL R  +L    L
Sbjct: 1   MGIQDIIGLQLRY--RYEKLISSDEKLAKSRRRSWVKK-LNGGLKGLRLSRSRKLTFKAL 60

Query: 61  KVSFL-ILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSY 103
            V  L   ++R   +I++R+K +ED+ PNIIFSTQ GLPVLS+
Sbjct: 61  SVMVLPSRIARVYADIISRIK-IEDLYPNIIFSTQLGLPVLSH 99

[Close]

BLAST of CcUC02G031680.1 vs. ExPASy TrEMBL
Match: A0A6A4KLK9 (SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_21367 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.2e-08
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 4   LEIAGIGGRRWDY-YEKLYSGGNRVVKRRP-RRWMKKILKRGMKGFRLYRLTRLRSFGLK 63
           +EI+ + G RW   YEKL    +     RP RRW  K+  R    FR  RL R R    +
Sbjct: 128 IEISDVVGGRWRIRYEKLTGIDHEKAAARPRRRWAMKMNGR----FRGIRLPRCRKLNWR 187

Query: 64  VSFLILLSRRIR----EIVNRMKVVEDVCPNIIFSTQWGLPVLSY 103
              +++  +RI     EI+NRMK+++D+CP I+FS  WGLPVLS+
Sbjct: 188 AFAILMSPKRIAEMYGEIINRMKMMDDICPGIVFSGHWGLPVLSH 228

[Close]

BLAST of CcUC02G031680.1 vs. ExPASy TrEMBL
Match: A0A1U7YA37 (uncharacterized protein LOC104242730 OS=Nicotiana sylvestris OX=4096 GN=LOC104242730 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-07
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 17  YEKLYSGGNRVVKRRPRR-WMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRI--- 76
           YE+L    +  V  RPRR W+ K +    KG    +L+R R    K   +++L RRI   
Sbjct: 11  YERLGGVEDLKVATRPRRCWLIKKMNGRFKGI---KLSRSRKLNWKAFSMVILPRRIARI 70

Query: 77  -REIVNRMKVVEDVCPNIIFSTQWGLPVLSY 103
            REIV RMK +EDVCP I+FS  WGLPVLS+
Sbjct: 71  YREIVKRMKNMEDVCPAIVFSCHWGLPVLSH 98

The following BLAST results are available for this feature:

BLAST of CcUC02G031680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61039.1	1.4e-36	83.02	hypothetical protein Csa_021124 [Cucumis sativus]	[more]
KAA0056096.1	3.6e-35	80.91	hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ9642...	[more]
KAG6599155.1	1.7e-32	78.43	Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAE9446725.1	1.1e-07	40.95	hypothetical protein C3L33_21367, partial [Rhododendron williamsianum]	[more]
OAY43889.1	1.1e-07	45.63	hypothetical protein MANES_08G105911v8 [Manihot esculenta]	[more]

BLAST of CcUC02G031680.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G031680.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ29	7.0e-37	83.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1	[more]
A0A5D3BCS3	1.7e-35	80.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2C9VF51	5.2e-08	45.63	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G106000 PE=4 SV=...	[more]
A0A6A4KLK9	5.2e-08	40.95	SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=26292...	[more]
A0A1U7YA37	2.6e-07	46.15	uncharacterized protein LOC104242730 OS=Nicotiana sylvestris OX=4096 GN=LOC10424...	[more]

BLAST of CcUC02G031680.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35123	OS07G0633900 PROTEIN-RELATED	coord: 17..102
None	No IPR available	PANTHER	PTHR35123:SF3	OS07G0633900 PROTEIN	coord: 17..102

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G031680	CcUC02G031680	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G031680.1-exon	CcUC02G031680.1-exon-CicolChr02:27441683..27442323	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G031680.1-five_prime_utr	CcUC02G031680.1-five_prime_utr-CicolChr02:27441683..27441886	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G031680.1-cds	CcUC02G031680.1-cds-CicolChr02:27441887..27442198	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G031680.1-three_prime_utr	CcUC02G031680.1-three_prime_utr-CicolChr02:27442199..27442323	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G031680.1	CcUC02G031680.1-protein	polypeptide