CcUC02G030980.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G030980.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Low temperature and salt responsive protein family
Location	CicolChr02: 26517266 .. 26517709 (-)
Sequence length	282
RNA-Seq Expression	CcUC02G030980.1
Synteny	CcUC02G030980.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCCATTCATGCTTTCCCCCAAATTCCTCTTATGCTGAAAGAGAAAGAGAAGAAGAGAGTATTATGGGTTCTGAGACTTTTGTAGAGATCATATTAGCAATACTTCTACCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGTGATTTCTTCAAACTCTGTTTTTCATTTTACACAACTTGTGTTTCTTCTCTTTCAATTTGTGTTTTGTTGATCAGTTTTTCATGTGCTCTTTAAGTGCAGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCAGGAATTATATATGCAATTTATGTTCTTGTTGGGTAAAAGAAAGGGAAGGACTTGAAAGTGTAATTTTGTGAATGTGTGTTTTCAACTATAGGTTTTACAAGGTTTTTGTTTTGTTTGTTCTTGGTTGTTTGGATGTAAGTTTGTGG

mRNA sequence

AAACCCCATTCATGCTTTCCCCCAAATTCCTCTTATGCTGAAAGAGAAAGAGAAGAAGAGAGTATTATGGGTTCTGAGACTTTTGTAGAGATCATATTAGCAATACTTCTACCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCAGGAATTATATATGCAATTTATGTTCTTGTTGGGTTTTACAAGGTTTTTGTTTTGTTTGTTCTTGGTTGTTTGGATGTAAGTTTGTGG

Coding sequence (CDS)

ATGGGTTCTGAGACTTTTGTAGAGATCATATTAGCAATACTTCTACCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCAGGAATTATATATGCAATTTATGTTCTTGTTGGGTTTTACAAGGTTTTTGTTTTGTTTGTTCTTGGTTGTTTGGATGTAAGTTTGTGG

Protein sequence

MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVGFYKVFVLFVLGCLDVSLW

Homology

[Close]

BLAST of CcUC02G030980.1 vs. NCBI nr
Match: XP_022941664.1 (low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022999688.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_022999696.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_023554157.1 low temperature-induced protein lt101.2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of CcUC02G030980.1 vs. NCBI nr
Match: XP_004143609.2 (uncharacterized protein LOC101203086 [Cucumis sativus] >KAE8647966.1 hypothetical protein Csa_000540 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1   MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
           MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 64  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 117

[Close]

BLAST of CcUC02G030980.1 vs. NCBI nr
Match: XP_038893278.1 (low temperature-induced protein lt101.2 [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 8.6e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEI+LAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEILLAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of CcUC02G030980.1 vs. NCBI nr
Match: XP_026412058.1 (low temperature-induced protein lt101.2 [Papaver somniferum])

HSP 1 Score: 106.7 bits (265), Expect = 8.6e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPIGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of CcUC02G030980.1 vs. NCBI nr
Match: XP_008445856.1 (PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 8.6e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-18
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-17
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 54
          M S TF+E+ILAI+LPP+GVFLRYG  VEFWICLLLT+LGYIPGIIYA+YVLV
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 54
          MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 54
          MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy Swiss-Prot
Match: Q9ZNS6 (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-16
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy TrEMBL
Match: A0A6J1KKG3 (low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493964 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.4e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy TrEMBL
Match: A0A6J1FUC5 (low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC111446956 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.4e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy TrEMBL
Match: A0A0A0KRZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175890 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.4e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy TrEMBL
Match: A0A1S3BED1 (low temperature-induced protein lt101.2 OS=Cucumis melo OX=3656 GN=LOC103488748 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54

[Close]

BLAST of CcUC02G030980.1 vs. ExPASy TrEMBL
Match: A0A6J1CCW8 (low temperature-induced protein lt101.2 OS=Momordica charantia OX=3673 GN=LOC111010062 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.4e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of CcUC02G030980.1 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of CcUC02G030980.1 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-19
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of CcUC02G030980.1 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-17
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of CcUC02G030980.1 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 73.9 bits (180), Expect = 5.7e-14
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGS  F+E++ AI +PP+GVFLRYG G+EFW+CLLLT+  +IPG+IYAIYVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]

BLAST of CcUC02G030980.1 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 70.1 bits (170), Expect = 8.3e-13
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 4  ETFVEIILAILLPPLGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVLV 54
          E F EI++AILLPPLGV L+ G C VEF ICL+LTILGYIPGIIYA+YV+V
Sbjct: 6  EVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56

The following BLAST results are available for this feature:

BLAST of CcUC02G030980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941664.1	5.0e-20	100.00	low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low...	[more]
XP_004143609.2	5.0e-20	100.00	uncharacterized protein LOC101203086 [Cucumis sativus] >KAE8647966.1 hypothetica...	[more]
XP_038893278.1	8.6e-20	98.15	low temperature-induced protein lt101.2 [Benincasa hispida]	[more]
XP_026412058.1	8.6e-20	98.15	low temperature-induced protein lt101.2 [Papaver somniferum]	[more]
XP_008445856.1	8.6e-20	98.15	PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo]	[more]

BLAST of CcUC02G030980.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNQ7	2.2e-18	84.62	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]
Q9ARD5	1.1e-17	81.13	Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE...	[more]
P68178	2.4e-17	83.02	Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=...	[more]
P68179	2.4e-17	83.02	Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE...	[more]
Q9ZNS6	4.6e-16	71.15	Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1	[more]

BLAST of CcUC02G030980.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KKG3	2.4e-20	100.00	low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493...	[more]
A0A6J1FUC5	2.4e-20	100.00	low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0KRZ2	2.4e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175890 PE=3 SV=1	[more]
A0A1S3BED1	4.2e-20	98.15	low temperature-induced protein lt101.2 OS=Cucumis melo OX=3656 GN=LOC103488748 ...	[more]
A0A6J1CCW8	5.4e-20	98.15	low temperature-induced protein lt101.2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of CcUC02G030980.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38905.1	2.3e-23	96.30	Low temperature and salt responsive protein family	[more]
AT3G05880.1	1.6e-19	84.62	Low temperature and salt responsive protein family	[more]
AT3G05890.1	3.3e-17	71.15	Low temperature and salt responsive protein family	[more]
AT1G57550.1	5.7e-14	67.31	Low temperature and salt responsive protein family	[more]
AT4G30650.1	8.3e-13	74.51	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 6..53 e-value: 7.7E-21 score: 74.0
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..53
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 10..25
None	No IPR available	PANTHER	PTHR21659:SF96	BNAA04G22250D PROTEIN	coord: 1..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G030980	CcUC02G030980	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G030980.1-exon	CcUC02G030980.1-exon-CicolChr02:26517266..26517320	exon
CcUC02G030980.1-exon	CcUC02G030980.1-exon-CicolChr02:26517380..26517459	exon
CcUC02G030980.1-exon	CcUC02G030980.1-exon-CicolChr02:26517563..26517709	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G030980.1-cds	CcUC02G030980.1-cds-CicolChr02:26517266..26517320	CDS
CcUC02G030980.1-cds	CcUC02G030980.1-cds-CicolChr02:26517380..26517459	CDS
CcUC02G030980.1-cds	CcUC02G030980.1-cds-CicolChr02:26517563..26517643	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G030980.1-five_prime_utr	CcUC02G030980.1-five_prime_utr-CicolChr02:26517644..26517709	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G030980.1	CcUC02G030980.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane