CcUC02G030210.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G030210.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 25539440 .. 25541780 (-)
Sequence length	397
RNA-Seq Expression	CcUC02G030210.1
Synteny	CcUC02G030210.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGATCCGAAATTACCTTTAAGGAAGCGGATGACTCGCTCGGATAGAACTTCGTCAGAGTCATTGTCGCTGCCTTCATTATCAAACTCCTCTTCCGATTCCGTTTCGACATCGTCTTTGTCATCAAACTCCTCTTCGGAATCCCCGTTGTCATCGTTTTTATCATCGAACTCCTCTTCCGAATCCCCTTCGTCATCGTCTTCATCATCATACTCCTCTGATTCCTCTTCGTCGTCGCCAGAGGAAATGTCGTCGTCCGACGACGACGAGATACAAATGACTCTTCTTTTGCTACCCGTTTTAGGCATTTCCTTGCAAAGGAAACATACTTTGGTAATTATATTATAATGGGATTTTTGTACGAATCACTTTAACTGTTTATTAGAAAAATAAAATTTGACCCTTTTATCAAAACAAAGCTTTTCAACCTTTTTTGTTTAATTTAAAGAATAATGTAGTTTTAAAAAATATGAAAAAAAATAAGATGGTTTAGAAACTAATTACAAATATATGATGGTCTGGAAATATATTTGCAAAATGGGTAATAAAAACATTAGTTTGAAGGATCAGTCAAATAACATTTTGGTTCAATTGGTTAAGTCAATCTATTAAATAATCCTATTATAATATTGTGAATTGAAGGGGATTTCGGTAATTCGTGACCGTTCTTTTTTCTTTCGTTTTAACTTTAATTTTATTTTGTTATTTCATTTCATCTTTTATGAGTTGACTAAAATTTATTGACTAATTTTATCATGTTTATACTTATTAGATCATCAAATGTAAACTTGAGCATAGTTTAACTAGTTAAAATATATAGATCAAGATATCAAATTTTGTTGAACTCAAAAATAAAATAAAATAAAATCAAAATGTTTGTTACTAATAGTTGGTCGTTTTTTTTTTTTTTTTTGAAGTGAACTTATTTTGATCCTACAATGACAAGCACACAAAAAGGTCCCTCTTATAACTAGGTATAGATGATTTCTTTAATGTTATAATATCATTATGAAGTGTATTGCATTTTAGTTTGCATGACTTTTTAAAGTGTTATAACCACGATACGGTTTGGTAATCGGTACGGGTGAGTTAAAGTTCTTCAGTAAGTGTCATAGTGTATGCTTGATGATATTACTATCTTGCAATTAGAGAATTAGTTTTAGTGAATTATATTTGACATGTTTTTTAAGGGTTAGATTGGATAAGTTAATGGAAATCGAAGTATGATTAGATGACTTGGGGGTATTTTTCAGGCGGGTTAGTTTGGTGAGTTTGTGCTATTTGGGGTGTGTTTGAACTACAACGATTTAGGCAATTATCCAACGATAAAGGCATTGGAGAAAAAAAGAAGTTATAGAAAAATGTGTTATAGTGGTGTTGACTATTAATATTTACTTTTATTCCGATTGTCTCTTGGCTTGTCTTTGATTTTATCCATGTCGTATTTGCTACATATTCTTTCCTTTTTTGGTTGCACGTGTTTTGGGCTTGACCTTTAATTGGTCTCGATCTCCTGCCTCGGTGATGATGGATTTTTTCCATTTGTGTTATATATATTTTTTCATGGTGTTGTGCCTTTCGAGGTTAAACCATTTTTGTGTGAATGAACGTGAGCATTGTAGAAGTTTTGAGATATGTGGTTATCTGCTCAAGTTTGCTAGTCAGAAATAGATCATGTATTGTTGACGATATACTGATCATTCTTGACATCAAATTCGGTTTGGTGCATTACTTTTTAGTTGGATGATGATTCAACTCTAGATTGGAGTTATTGTTGAGTAGCATCAAATTAAGGGGGAGCCCAATCTGCTGACTCTTCCATAAGGAGCACAATATTTAGGGGAGCCTAAATCGCTCACTAGTTATTGCACATTATACTTCTTAGTTAAATTTTGTATTTGAAAAGAAGTGTCTTGTGAACATTGGTTATAACTCTTTTCATTCAGGCGTAAAGTCTTCCAGACGTAGGTGTAGTTACACCAAACTGAGTTACCATTTCTGTGTGTTATCTCTCTCTTATACTTCTGTTTAATTTGTTTATACTCTTATCAATAACATTGTTATTCATGTGTGGTACTTCTTGTGATCTACCTACTTTTCGAATTGTATCTCAATGCAAAGTTTCGACCAAGAATTGTCGTTAGGTATTTACTATTAGGAGAGGGTTTTGCCAATACCAAAATAGGCAGCATTGGCATATATAATCCACTTCTTTTGGCATGATTAACTTATCGTTGGTAGATAGTTACTGGTAGCTTGGATCGCAGCAGAAAAAGATTGGTTTTTGTGGAATGGAATTGTGAAGAAGCTCTGAAGCAAAGACTATCTGCCATAGAGCTT

mRNA sequence

AAACGATCCGAAATTACCTTTAAGGAAGCGGATGACTCGCTCGGATAGAACTTCGTCAGAGTCATTGTCGCTGCCTTCATTATCAAACTCCTCTTCCGATTCCGTTTCGACATCGTCTTTGTCATCAAACTCCTCTTCGGAATCCCCGTTGTCATCGTTTTTATCATCGAACTCCTCTTCCGAATCCCCTTCGTCATCGTCTTCATCATCATACTCCTCTGATTCCTCTTCGTCGTCGCCAGAGGAAATGTCGTCGTCCGACGACGACGAGATACAAATGACTCTTCTTTTGCTACCCATAGTTACTGGTAGCTTGGATCGCAGCAGAAAAAGATTGGTTTTTGTGGAATGGAATTGTGAAGAAGCTCTGAAGCAAAGACTATCTGCCATAGAGCTT

Coding sequence (CDS)

ATGACTCGCTCGGATAGAACTTCGTCAGAGTCATTGTCGCTGCCTTCATTATCAAACTCCTCTTCCGATTCCGTTTCGACATCGTCTTTGTCATCAAACTCCTCTTCGGAATCCCCGTTGTCATCGTTTTTATCATCGAACTCCTCTTCCGAATCCCCTTCGTCATCGTCTTCATCATCATACTCCTCTGATTCCTCTTCGTCGTCGCCAGAGGAAATGTCGTCGTCCGACGACGACGAGATACAAATGACTCTTCTTTTGCTACCCATAGTTACTGGTAGCTTGGATCGCAGCAGAAAAAGATTGGTTTTTGTGGAATGGAATTGTGAAGAAGCTCTGAAGCAAAGACTATCTGCCATAGAGCTT

Protein sequence

MTRSDRTSSESLSLPSLSNSSSDSVSTSSLSSNSSSESPLSSFLSSNSSSESPSSSSSSSYSSDSSSSSPEEMSSSDDDEIQMTLLLLPIVTGSLDRSRKRLVFVEWNCEEALKQRLSAIEL

Homology

The following BLAST results are available for this feature:

BLAST of CcUC02G030210.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G030210.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G030210.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G030210.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G030210	CcUC02G030210	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G030210.1-exon	CcUC02G030210.1-exon-CicolChr02:25539440..25539538	exon
CcUC02G030210.1-exon	CcUC02G030210.1-exon-CicolChr02:25541483..25541780	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G030210.1-cds	CcUC02G030210.1-cds-CicolChr02:25539440..25539538	CDS
CcUC02G030210.1-cds	CcUC02G030210.1-cds-CicolChr02:25541483..25541749	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G030210.1-five_prime_utr	CcUC02G030210.1-five_prime_utr-CicolChr02:25541750..25541780	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G030210.1	CcUC02G030210.1-protein	polypeptide