CcUC02G029320.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G029320.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	homeobox protein 6
Location	CicolChr02: 24265019 .. 24266222 (+)
Sequence length	956
RNA-Seq Expression	CcUC02G029320.1
Synteny	CcUC02G029320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAGAGAGAGATTGAGAGAAAAGAGAGCAAAATTAAAGAACAATTTGCAATTGAAATAATGAAGATGATGGGAAGAAGCTGCCATGGAGATGAAATATGGGAGACTGAAATTGAAGAAGAAGAAGAAGAAGAAGAAGCATTGTCTTTCTGTGATCTTCCTGTGAAAGAAAAGCAGCAGGCGATGAGAACGTCGTCGTCGGCCGCCGTGGAAACAGAGGAATTTGATTTCAAGCAGTGGCGACCGGCGCCGCCGATGTTGGCGGCGGATGAGCTGTTCTTCCAAGGCCAAATGCTCCCTCTTCGTCTGTCCTTCAGCTCTGAAAATAGACAGAGTAATATTAATGAATTGTTTGGTGGAAATTTGTGGAATAGGTCGGAGTCTATGGATCATAATATGTTGAGGTTTAGAAATGGAAGCTGTAGTAGTAGTAGCAGTAGAAGCCATTATTCCAGGTAAATACCTTTCAAAAACTCATTGAATTATTTTAATTAATACACTATTTTCCCCCAAATAAATACTTAGAATTTAATCACTAAGTAATTAAGAAAGTTTTTAATTATCTTTTAAAATATCATATATAAAAAAGAAAAGAAAAAAAAGGCATGCAAATGGTTTAAATCTACCCAACTCCAAATTCAAAGCAGAGACTTGTTAACATTTAAAATTATGGTATGAAAAGTAATTTTAATATTAATTGCAGGTCATCGAGTCATAGTAATAATTCCGTTTCAATTCCGACGAACTCAAAGCCAAGAACTCAGAAGAACGTTTTCCACTCTCACCCAAGTCCCACGCCTCAAATCAGATCCTTCTCAACTTCCAGCCACCGGAGCCGGAGCCGGAGTTCCTCCCGGTGGGAATTTTTCCGACTGGGTCTTCTTCGAACGCCGGGAATGGAGCTTCAAGACCTCAAAACTCGCACCACCACCACCACCGCCACGGGCACGGCGGCGCATAAAACAACGGCCTCAATTCTAGGTGTGGTTAGCTGCAAAAAATCGGTGGATGCAGTACCGGCGACGGCGGCGAAGAATAGAATTAGGAATGAAAAAGTTTTGAATAATAATAATAATAATAATAATAGTGTTGAAATTAGGGAAAAGGAAAAAGAAAAGGAAAGAAGGGTGTCACATCGTCGAACATTTGAATGGCTAAAGCAGCTCTCGCATGCAACCTTTGGAGAGGAACAATAA

mRNA sequence

AGAGAGAGAGAGAGAGAGAGATTGAGAGAAAAGAGAGCAAAATTAAAGAACAATTTGCAATTGAAATAATGAAGATGATGGGAAGAAGCTGCCATGGAGATGAAATATGGGAGACTGAAATTGAAGAAGAAGAAGAAGAAGAAGAAGCATTGTCTTTCTGTGATCTTCCTGTGAAAGAAAAGCAGCAGGCGATGAGAACGTCGTCGTCGGCCGCCGTGGAAACAGAGGAATTTGATTTCAAGCAGTGGCGACCGGCGCCGCCGATGTTGGCGGCGGATGAGCTGTTCTTCCAAGGCCAAATGCTCCCTCTTCGTCTGTCCTTCAGCTCTGAAAATAGACAGAGTAATATTAATGAATTGTTTGGTGGAAATTTGTGGAATAGGTCGGAGTCTATGGATCATAATATGTTGAGGTTTAGAAATGGAAGCTGTAGTAGTAGTAGCAGTAGAAGCCATTATTCCAGGTCATCGAGTCATAGTAATAATTCCGTTTCAATTCCGACGAACTCAAAGCCAAGAACTCAGAAGAACGTTTTCCACTCTCACCCAAGTCCCACGCCTCAAATCAGATCCTTCTCAACTTCCAGCCACCGGAGCCGGAGCCGGAGTTCCTCCCGGTGGGAATTTTTCCGACTGGGTCTTCTTCGAACGCCGGGAATGGAGCTTCAAGACCTCAAAACTCGCACCACCACCACCACCGCCACGGGCACGGCGGCGCATAAAACAACGGCCTCAATTCTAGGTGTGGTTAGCTGCAAAAAATCGGTGGATGCAGTACCGGCGACGGCGGCGAAGAATAGAATTAGGAATGAAAAAGTTTTGAATAATAATAATAATAATAATAATAGTGTTGAAATTAGGGAAAAGGAAAAAGAAAAGGAAAGAAGGGTGTCACATCGTCGAACATTTGAATGGCTAAAGCAGCTCTCGCATGCAACCTTTGGAGAGGAACAATAA

Coding sequence (CDS)

ATGAAGATGATGGGAAGAAGCTGCCATGGAGATGAAATATGGGAGACTGAAATTGAAGAAGAAGAAGAAGAAGAAGAAGCATTGTCTTTCTGTGATCTTCCTGTGAAAGAAAAGCAGCAGGCGATGAGAACGTCGTCGTCGGCCGCCGTGGAAACAGAGGAATTTGATTTCAAGCAGTGGCGACCGGCGCCGCCGATGTTGGCGGCGGATGAGCTGTTCTTCCAAGGCCAAATGCTCCCTCTTCGTCTGTCCTTCAGCTCTGAAAATAGACAGAGTAATATTAATGAATTGTTTGGTGGAAATTTGTGGAATAGGTCGGAGTCTATGGATCATAATATGTTGAGGTTTAGAAATGGAAGCTGTAGTAGTAGTAGCAGTAGAAGCCATTATTCCAGGTCATCGAGTCATAGTAATAATTCCGTTTCAATTCCGACGAACTCAAAGCCAAGAACTCAGAAGAACGTTTTCCACTCTCACCCAAGTCCCACGCCTCAAATCAGATCCTTCTCAACTTCCAGCCACCGGAGCCGGAGCCGGAGTTCCTCCCGGTGGGAATTTTTCCGACTGGGTCTTCTTCGAACGCCGGGAATGGAGCTTCAAGACCTCAAAACTCGCACCACCACCACCACCGCCACGGGCACGGCGGCGCATAAAACAACGGCCTCAATTCTAGGTGTGGTTAGCTGCAAAAAATCGGTGGATGCAGTACCGGCGACGGCGGCGAAGAATAGAATTAGGAATGAAAAAGTTTTGAATAATAATAATAATAATAATAATAGTGTTGAAATTAGGGAAAAGGAAAAAGAAAAGGAAAGAAGGGTGTCACATCGTCGAACATTTGAATGGCTAAAGCAGCTCTCGCATGCAACCTTTGGAGAGGAACAATAA

Protein sequence

MKMMGRSCHGDEIWETEIEEEEEEEEALSFCDLPVKEKQQAMRTSSSAAVETEEFDFKQWRPAPPMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRSESMDHNMLRFRNGSCSSSSSRSHYSRSSSHSNNSVSIPTNSKPRTQKNVFHSHPSPTPQIRSFSTSSHRSRSRSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGTAAHKTTASILGVVSCKKSVDAVPATAAKNRIRNEKVLNNNNNNNNSVEIREKEKEKERRVSHRRTFEWLKQLSHATFGEEQ

Homology

[Close]

BLAST of CcUC02G029320.1 vs. NCBI nr
Match: XP_038902148.1 (uncharacterized protein LOC120088781 [Benincasa hispida])

HSP 1 Score: 402.9 bits (1034), Expect = 2.4e-108
Identity = 243/306 (79.41%), Postives = 250/306 (81.70%), Query Frame = 0


Query: 1   MKMMGRSCHGDEIWETEIEEE---EEEEEALSFCDLPVKEKQQAMRTSSSAAVETEEFDF 60
           MK+MGRS HGDE WE   +EE   EEEEEALSFCDLPVKEKQQ MR S+SAAVETE+FDF
Sbjct: 1   MKIMGRSFHGDERWEEADKEETEIEEEEEALSFCDLPVKEKQQPMR-SASAAVETEDFDF 60

Query: 61  KQWR-PAPPMLAADELFFQGQMLPLRLSFSSEN-RQSNINELFGGNLWNRSESMDHNMLR 120
             WR P PPM AADELFFQGQMLPLRLSFSSEN   +NI+ LFGGNLW RSESMDHNMLR
Sbjct: 61  NHWRPPPPPMFAADELFFQGQMLPLRLSFSSENSNNNNIHHLFGGNLWQRSESMDHNMLR 120

Query: 121 FRNGSCSSSSSRSHYSRSSSHSNNSVSIPTNSKPRTQKNVFHSHPSPTPQIRSFSTSSHR 180
           F NGS SSSSSRSHYSRSSS SNNSVSIPTNSK R QKNVFHSHPSPTPQIRSFS SSH 
Sbjct: 121 FGNGSSSSSSSRSHYSRSSSVSNNSVSIPTNSKARPQKNVFHSHPSPTPQIRSFSNSSH- 180

Query: 181 SRSRSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGTAAHKTTASILGVVSCKKSVDA 240
            RSRSSSRWEFFRLGLLRTPGMEL DLKTR TTT A  T  HKTT SILGVVSCK+SVD 
Sbjct: 181 -RSRSSSRWEFFRLGLLRTPGMELHDLKTR-TTTAAAATTTHKTTTSILGVVSCKRSVDT 240

Query: 241 VPATAAKNRIRNEKVLNNNNNNNNSVEIR------EKEKEKERRVSHRRTFEWLKQLSHA 296
           V  T AKNR RNE V      NN  VEIR      EKEKEKERRVSHRRTFEWLKQLSHA
Sbjct: 241 VATTVAKNR-RNENV----KKNNKKVEIREKEKEKEKEKEKERRVSHRRTFEWLKQLSHA 297

[Close]

BLAST of CcUC02G029320.1 vs. NCBI nr
Match: XP_011649316.1 (homeobox protein 6 [Cucumis sativus] >KGN61971.1 hypothetical protein Csa_006045 [Cucumis sativus])

HSP 1 Score: 383.3 bits (983), Expect = 1.9e-102
Identity = 238/317 (75.08%), Postives = 254/317 (80.13%), Query Frame = 0


Query: 1   MKMMG-RSCHGDEIWETE-----------IEEEEEEEEALSFCDLPVKEKQQAMRTSSSA 60
           MK++G RSCHGDE  E E            EEEEEEEEALS CDLPVKEKQQ  R+ S+ 
Sbjct: 1   MKIIGRRSCHGDERCEEEDKEETQIDDDDDEEEEEEEEALSLCDLPVKEKQQPTRSVSTT 60

Query: 61  AVET-EEFDFKQWRPAP-PMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRS 120
            VET ++FDF  WRP P PML AD+LFFQG MLPLRLSFSSEN Q+N      GNLW RS
Sbjct: 61  VVETDQDFDFNHWRPPPSPMLTADDLFFQGHMLPLRLSFSSENSQNN-----NGNLWCRS 120

Query: 121 ESMD-HNMLRFRNGSCSSSSSRSHYSRSSSHSNNSVSIPTNSKPR-TQKNVFHSHPSPTP 180
           ESMD +NMLRFRN S SSSSSRSHYSRSSS SNNS+SIPTNSKPR +  NVFHSHPSPTP
Sbjct: 121 ESMDGNNMLRFRNESTSSSSSRSHYSRSSSLSNNSISIPTNSKPRPSNNNVFHSHPSPTP 180

Query: 181 QIRSFSTSSHRSRSRSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGT---AAHKTTA 240
           QIRSFSTSSH  RSRSSSRWEFFRLGLLRTPGMEL DLKTRTTTTT T T    AHKTTA
Sbjct: 181 QIRSFSTSSH--RSRSSSRWEFFRLGLLRTPGMELHDLKTRTTTTTTTTTTTSTAHKTTA 240

Query: 241 SILGVVSCKKSVDAVP-ATAAKNRIRNEKVLNNN--NNNNNSVEIREKEKEKERRVSHRR 296
           SILGVVSCK+SV+ VP  T +KNRIR E VL NN  NN++N VEIREKEKEKERRVSHRR
Sbjct: 241 SILGVVSCKRSVETVPTTTGSKNRIRRENVLENNKKNNDDNKVEIREKEKEKERRVSHRR 300

[Close]

BLAST of CcUC02G029320.1 vs. NCBI nr
Match: XP_008457772.1 (PREDICTED: homeobox protein 6 [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 2.8e-101
Identity = 229/310 (73.87%), Postives = 251/310 (80.97%), Query Frame = 0


Query: 1   MKMMG-RSCHGDE-------IWETEI-EEEEEEEEALSFCDLPVKEKQQAMRTSSSAAVE 60
           MK++G RSCHGDE         ET+I ++++EEEEALS CDLPVKEKQQ  R+ S+  VE
Sbjct: 1   MKILGRRSCHGDERSCEEEDKEETQIDDDDDEEEEALSLCDLPVKEKQQPTRSVSATIVE 60

Query: 61  TEEFDFKQWRPAP-PMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRSESMD 120
           TE+FDF  WRP P PML AD+LFFQG MLPLRLSFSSEN Q+N      GNLW+RSESMD
Sbjct: 61  TEDFDFNNWRPPPSPMLTADDLFFQGHMLPLRLSFSSENSQNN-----NGNLWSRSESMD 120

Query: 121 -HNMLRFRNGSCSSSSSRSHYSRSSSHSNNSVSIP-TNSKPR-TQKNVFHSHPSPTPQIR 180
            +NMLRFRNGS SSSSSRSHYSRSSS SNNS+SIP TN+KPR +  NVFHSHPSPTPQIR
Sbjct: 121 RNNMLRFRNGSTSSSSSRSHYSRSSSLSNNSISIPTTNTKPRPSNNNVFHSHPSPTPQIR 180

Query: 181 SFSTSSHRSRSRSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGTAAHKTTASILGVV 240
           SFSTSSH  RSRSSSRWEFFRLGLLRTPGMEL DLKTRTTTTT T    HKTTASILGVV
Sbjct: 181 SFSTSSH--RSRSSSRWEFFRLGLLRTPGMELHDLKTRTTTTTTTTMTTHKTTASILGVV 240

Query: 241 SCKKSVDAVPAT--AAKNRIRNEKVLNNNNNNNNSVEIREKEKEKERRVSHRRTFEWLKQ 296
           SCK+SVD VP T  ++ NRIR E VL  NNNN   +  +EKEKEKERRVSHRRTFEWLKQ
Sbjct: 241 SCKRSVDTVPTTTGSSNNRIRRENVLKKNNNNKVEIREKEKEKEKERRVSHRRTFEWLKQ 300

[Close]

BLAST of CcUC02G029320.1 vs. NCBI nr
Match: XP_022947585.1 (uncharacterized protein LOC111451408 [Cucurbita moschata])

HSP 1 Score: 313.5 bits (802), Expect = 1.9e-81
Identity = 197/307 (64.17%), Postives = 223/307 (72.64%), Query Frame = 0


Query: 4   MGRSCHGDEIWETEIEEEEEEEEALSFCDLPVKEKQQAMRTSSSAAVETEEFDFKQWRP- 63
           M  + HG+E      +++E+EEEALS CDLPVKEKQQ    + +    TE+FDF  W P 
Sbjct: 1   MATTIHGEE----HDKQDEDEEEALSLCDLPVKEKQQPSLLNENPI--TEDFDFNHWPPP 60

Query: 64  --APPMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRSESMDHNMLRFRNGS 123
              PPM AAD++FFQG +LPLRLS SS+N     N  F   L  RSESMDHNMLRFRNGS
Sbjct: 61  PSPPPMCAADDIFFQGHLLPLRLSVSSDNTH---NHFFSKPLSARSESMDHNMLRFRNGS 120

Query: 124 CSSS--SSRSHYSRSSSHSNNSVSIPTNSKPRTQKNVFHSHPSPTPQIRSFSTSSHRSRS 183
            SSS  SSRSHYSR SS SNNS+SIPTNSKPRTQ NVFHSHPSPTPQIRSFST   RSRS
Sbjct: 121 SSSSSNSSRSHYSRCSSISNNSISIPTNSKPRTQNNVFHSHPSPTPQIRSFSTFGRRSRS 180

Query: 184 RSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGTAAHKTTASILGVVSCKKSVDAVPA 243
           RSSSRW+FFR+GLLRTPGMEL DLKTRTT + A  T   KTTAS LGVVSCKKSV+ +PA
Sbjct: 181 RSSSRWDFFRVGLLRTPGMELHDLKTRTTVSNAVPTVGQKTTASFLGVVSCKKSVETIPA 240

Query: 244 T-AAKN------RIRNEK---VLNNNNNNNNSVEIREKEKEKERRVSHRRTFEWLKQLSH 296
               KN      + RNEK   +       N++VEIREKEKEK  R+SHRRTFEWLKQLSH
Sbjct: 241 AKKIKNWSGNIGKKRNEKGKGIGIREKELNDNVEIREKEKEKATRLSHRRTFEWLKQLSH 298

[Close]

BLAST of CcUC02G029320.1 vs. NCBI nr
Match: KAG6605199.1 (hypothetical protein SDJN03_02516, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313.2 bits (801), Expect = 2.5e-81
Identity = 195/308 (63.31%), Postives = 221/308 (71.75%), Query Frame = 0


Query: 4   MGRSCHGDEIWETEIEEEEEEEEALSFCDLPVKEKQQAMRTSSSAAVETEEFDFKQWRP- 63
           M  + HG E  + + +E+E+EEEALS CDLPVKEKQQ +  + +    TE+FDF  W P 
Sbjct: 1   MATTIHGGEEHDKQ-DEDEDEEEALSLCDLPVKEKQQPLLLNENPI--TEDFDFNHWPPP 60

Query: 64  --APPMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRSESMDHNMLRFRNGS 123
              PPM AAD++FFQG +LPLRLS SS+N     N  F   L  RSESMDHNMLRFRNGS
Sbjct: 61  PSPPPMCAADDIFFQGHLLPLRLSVSSDNTH---NHFFSKPLSARSESMDHNMLRFRNGS 120

Query: 124 CSSS--SSRSHYSRSSSHSNNSVSIPTNSKPRTQKNVFHSHPSPTPQIRSFSTSSHRSRS 183
            SSS  SSRSHYSR SS SNNS+SIPTNSKPRTQ NVFHSHPSPTPQIRSFST   RSRS
Sbjct: 121 SSSSSNSSRSHYSRCSSISNNSISIPTNSKPRTQNNVFHSHPSPTPQIRSFSTFGRRSRS 180

Query: 184 RSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGTAAHKTTASILGVVSCKKSVDAVPA 243
           RSSSRW+FFR+GLLRTPGMEL DLKTRTT T A  T   KTTAS LGVVSCKKSV+ +PA
Sbjct: 181 RSSSRWDFFRVGLLRTPGMELHDLKTRTTVTNAVPTVGQKTTASFLGVVSCKKSVETIPA 240

Query: 244 T----------AAKNRIRNEKVLNNNNNNNNSVEIREKEKEKERRVSHRRTFEWLKQLSH 296
                        K   + E +       N++VEIREKEKEK  R+SHRRTFEWLKQLSH
Sbjct: 241 AKKIRNWSGNIGKKRNEKGEGIGIREKELNDNVEIREKEKEKATRLSHRRTFEWLKQLSH 300

[Close]

BLAST of CcUC02G029320.1 vs. ExPASy TrEMBL
Match: A0A0A0LPT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G277620 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 9.4e-103
Identity = 238/317 (75.08%), Postives = 254/317 (80.13%), Query Frame = 0


Query: 1   MKMMG-RSCHGDEIWETE-----------IEEEEEEEEALSFCDLPVKEKQQAMRTSSSA 60
           MK++G RSCHGDE  E E            EEEEEEEEALS CDLPVKEKQQ  R+ S+ 
Sbjct: 1   MKIIGRRSCHGDERCEEEDKEETQIDDDDDEEEEEEEEALSLCDLPVKEKQQPTRSVSTT 60

Query: 61  AVET-EEFDFKQWRPAP-PMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRS 120
            VET ++FDF  WRP P PML AD+LFFQG MLPLRLSFSSEN Q+N      GNLW RS
Sbjct: 61  VVETDQDFDFNHWRPPPSPMLTADDLFFQGHMLPLRLSFSSENSQNN-----NGNLWCRS 120

Query: 121 ESMD-HNMLRFRNGSCSSSSSRSHYSRSSSHSNNSVSIPTNSKPR-TQKNVFHSHPSPTP 180
           ESMD +NMLRFRN S SSSSSRSHYSRSSS SNNS+SIPTNSKPR +  NVFHSHPSPTP
Sbjct: 121 ESMDGNNMLRFRNESTSSSSSRSHYSRSSSLSNNSISIPTNSKPRPSNNNVFHSHPSPTP 180

Query: 181 QIRSFSTSSHRSRSRSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGT---AAHKTTA 240
           QIRSFSTSSH  RSRSSSRWEFFRLGLLRTPGMEL DLKTRTTTTT T T    AHKTTA
Sbjct: 181 QIRSFSTSSH--RSRSSSRWEFFRLGLLRTPGMELHDLKTRTTTTTTTTTTTSTAHKTTA 240

Query: 241 SILGVVSCKKSVDAVP-ATAAKNRIRNEKVLNNN--NNNNNSVEIREKEKEKERRVSHRR 296
           SILGVVSCK+SV+ VP  T +KNRIR E VL NN  NN++N VEIREKEKEKERRVSHRR
Sbjct: 241 SILGVVSCKRSVETVPTTTGSKNRIRRENVLENNKKNNDDNKVEIREKEKEKERRVSHRR 300

[Close]

BLAST of CcUC02G029320.1 vs. ExPASy TrEMBL
Match: A0A1S3C7L1 (homeobox protein 6 OS=Cucumis melo OX=3656 GN=LOC103497383 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.4e-101
Identity = 229/310 (73.87%), Postives = 251/310 (80.97%), Query Frame = 0


Query: 1   MKMMG-RSCHGDE-------IWETEI-EEEEEEEEALSFCDLPVKEKQQAMRTSSSAAVE 60
           MK++G RSCHGDE         ET+I ++++EEEEALS CDLPVKEKQQ  R+ S+  VE
Sbjct: 1   MKILGRRSCHGDERSCEEEDKEETQIDDDDDEEEEALSLCDLPVKEKQQPTRSVSATIVE 60

Query: 61  TEEFDFKQWRPAP-PMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRSESMD 120
           TE+FDF  WRP P PML AD+LFFQG MLPLRLSFSSEN Q+N      GNLW+RSESMD
Sbjct: 61  TEDFDFNNWRPPPSPMLTADDLFFQGHMLPLRLSFSSENSQNN-----NGNLWSRSESMD 120

Query: 121 -HNMLRFRNGSCSSSSSRSHYSRSSSHSNNSVSIP-TNSKPR-TQKNVFHSHPSPTPQIR 180
            +NMLRFRNGS SSSSSRSHYSRSSS SNNS+SIP TN+KPR +  NVFHSHPSPTPQIR
Sbjct: 121 RNNMLRFRNGSTSSSSSRSHYSRSSSLSNNSISIPTTNTKPRPSNNNVFHSHPSPTPQIR 180

Query: 181 SFSTSSHRSRSRSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGTAAHKTTASILGVV 240
           SFSTSSH  RSRSSSRWEFFRLGLLRTPGMEL DLKTRTTTTT T    HKTTASILGVV
Sbjct: 181 SFSTSSH--RSRSSSRWEFFRLGLLRTPGMELHDLKTRTTTTTTTTMTTHKTTASILGVV 240

Query: 241 SCKKSVDAVPAT--AAKNRIRNEKVLNNNNNNNNSVEIREKEKEKERRVSHRRTFEWLKQ 296
           SCK+SVD VP T  ++ NRIR E VL  NNNN   +  +EKEKEKERRVSHRRTFEWLKQ
Sbjct: 241 SCKRSVDTVPTTTGSSNNRIRRENVLKKNNNNKVEIREKEKEKEKERRVSHRRTFEWLKQ 300

[Close]

BLAST of CcUC02G029320.1 vs. ExPASy TrEMBL
Match: A0A6J1G7B7 (uncharacterized protein LOC111451408 OS=Cucurbita moschata OX=3662 GN=LOC111451408 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 9.2e-82
Identity = 197/307 (64.17%), Postives = 223/307 (72.64%), Query Frame = 0


Query: 4   MGRSCHGDEIWETEIEEEEEEEEALSFCDLPVKEKQQAMRTSSSAAVETEEFDFKQWRP- 63
           M  + HG+E      +++E+EEEALS CDLPVKEKQQ    + +    TE+FDF  W P 
Sbjct: 1   MATTIHGEE----HDKQDEDEEEALSLCDLPVKEKQQPSLLNENPI--TEDFDFNHWPPP 60

Query: 64  --APPMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRSESMDHNMLRFRNGS 123
              PPM AAD++FFQG +LPLRLS SS+N     N  F   L  RSESMDHNMLRFRNGS
Sbjct: 61  PSPPPMCAADDIFFQGHLLPLRLSVSSDNTH---NHFFSKPLSARSESMDHNMLRFRNGS 120

Query: 124 CSSS--SSRSHYSRSSSHSNNSVSIPTNSKPRTQKNVFHSHPSPTPQIRSFSTSSHRSRS 183
            SSS  SSRSHYSR SS SNNS+SIPTNSKPRTQ NVFHSHPSPTPQIRSFST   RSRS
Sbjct: 121 SSSSSNSSRSHYSRCSSISNNSISIPTNSKPRTQNNVFHSHPSPTPQIRSFSTFGRRSRS 180

Query: 184 RSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGTAAHKTTASILGVVSCKKSVDAVPA 243
           RSSSRW+FFR+GLLRTPGMEL DLKTRTT + A  T   KTTAS LGVVSCKKSV+ +PA
Sbjct: 181 RSSSRWDFFRVGLLRTPGMELHDLKTRTTVSNAVPTVGQKTTASFLGVVSCKKSVETIPA 240

Query: 244 T-AAKN------RIRNEK---VLNNNNNNNNSVEIREKEKEKERRVSHRRTFEWLKQLSH 296
               KN      + RNEK   +       N++VEIREKEKEK  R+SHRRTFEWLKQLSH
Sbjct: 241 AKKIKNWSGNIGKKRNEKGKGIGIREKELNDNVEIREKEKEKATRLSHRRTFEWLKQLSH 298

[Close]

BLAST of CcUC02G029320.1 vs. ExPASy TrEMBL
Match: A0A6J1JCH9 (probable membrane-associated kinase regulator 1 OS=Cucurbita maxima OX=3661 GN=LOC111483795 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.2e-78
Identity = 192/302 (63.58%), Postives = 218/302 (72.19%), Query Frame = 0


Query: 4   MGRSCHGDEIWETEIE-EEEEEEEALSFCDLPVKEKQQAMRTS-----SSAAVETEEFDF 63
           MGRSCHGDE WE + + +E+E+EEALSFCDLP+KE Q  +  +     SSAAV++E+FDF
Sbjct: 1   MGRSCHGDETWEEQNQIQEQEDEEALSFCDLPLKETQPPLNLNETPIRSSAAVQSEDFDF 60

Query: 64  KQWRP--APPMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRSESMDHNMLR 123
               P    PM AADE+FFQG +LPL  SFSSEN  S+ N  F  N   RSES D  MLR
Sbjct: 61  NHCPPPLPQPMCAADEVFFQGHILPLCHSFSSEN--SHNNPFFPRNSSTRSESSD--MLR 120

Query: 124 FRNGSCSSSSSRSHYSRSSSHSNNSVSIPTNSKPRTQKNVFHSHPSPTPQIRSFSTSSHR 183
           FRNGS SSSSSRSHYSRSSS SNNS+SIPTNSKPR   NVFHSHPSPTPQIRS STS   
Sbjct: 121 FRNGSTSSSSSRSHYSRSSSISNNSISIPTNSKPRPHNNVFHSHPSPTPQIRSHSTSGR- 180

Query: 184 SRSRSSSRWEFFRLGLLRTPGMELQDLKTRTTTTTATGT--AAHKTTASILGVVSCKKSV 243
            RSRSSSRW+FFRLGLLRTPGMEL DLKTRT +++A     AAH T  S LGVVSCKKSV
Sbjct: 181 -RSRSSSRWDFFRLGLLRTPGMELHDLKTRTNSSSAAAATPAAHTTAGSFLGVVSCKKSV 240

Query: 244 DAVPATAAKNRIRNEKVLNNNNNNNNSVEIREKEKEKERRVSHRRTFEWLKQLSHATFGE 296
           D V A   K R           + N   + +EKEKE+E RVSHRRTFEW+KQLSHA+ G+
Sbjct: 241 DTVAAAGKKKR-----------SENGKEKEKEKEKERETRVSHRRTFEWVKQLSHASSGD 285

[Close]

BLAST of CcUC02G029320.1 vs. ExPASy TrEMBL
Match: A0A6J1KZ54 (uncharacterized protein LOC111499574 OS=Cucurbita maxima OX=3661 GN=LOC111499574 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 2.1e-78
Identity = 197/307 (64.17%), Postives = 218/307 (71.01%), Query Frame = 0


Query: 4   MGRSCHGDE--IWETEIEEEEEEEEALSFCDLPVKEKQQAMRTSSSAAVETEEFDFKQWR 63
           M  + HGDE    + E EEEEEEEEALS CDLPVKEKQQ +    +    TE+FDF  W 
Sbjct: 1   MATTIHGDEHDNQDEEDEEEEEEEEALSMCDLPVKEKQQPLLLDENPI--TEDFDFNHW- 60

Query: 64  PAPPMLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRSESMDHNMLRFRNGSC 123
           P PPM AAD++FFQG +LPLRLS SS+N     N  F   L  RSESMDHNMLRFRNGS 
Sbjct: 61  PPPPMCAADDIFFQGHLLPLRLSVSSDNTH---NHFFSKPLSARSESMDHNMLRFRNGSS 120

Query: 124 SSS-SSRSHYSRSSSHSNNSVSIPTNSKPRTQKNVFHSHPSPTPQIRSFSTSSHRSRSRS 183
           SSS SSRSHYSR SS SNNS+SIPTNSKPRTQ NVFHSHPSPTPQIRSFST       RS
Sbjct: 121 SSSNSSRSHYSRCSSISNNSISIPTNSKPRTQNNVFHSHPSPTPQIRSFSTFGR----RS 180

Query: 184 SSRWEFFRLGLLRTPGMELQDLKTRTTTTT---ATGTAAHKTTASILGVVSCKKSVDAVP 243
           SSRW+FFR+GLLRTPGMEL DLKTRTT      A  T   KT  + LGVVSCKKSVD +P
Sbjct: 181 SSRWDFFRVGLLRTPGMELHDLKTRTTNGAAFEAEPTVGQKTRGTFLGVVSCKKSVDTIP 240

Query: 244 AT-AAKN------RIRNEK---VLNNNNNNNNSVEIREKEKEKERRVSHRRTFEWLKQLS 295
           A    KN      + RNEK   +    N  N++VEIREKEKEK  R+SHRRTFEWLKQLS
Sbjct: 241 AAKKIKNWSGNIVKKRNEKGKGIGIRENELNDNVEIREKEKEKATRLSHRRTFEWLKQLS 297

[Close]

BLAST of CcUC02G029320.1 vs. TAIR 10
Match: AT5G67350.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-11
Identity = 97/305 (31.80%), Postives = 137/305 (44.92%), Query Frame = 0


Query: 20  EEEEEEEALSFCDLPVKEKQQAMRTSSSAAVETEEFD--------------FKQWRPAPP 79
           EEEEEEEALS CDLP  EK +     S    E EEFD                   PAP 
Sbjct: 27  EEEEEEEALSLCDLP-NEKGE---LRSIVKEEDEEFDSGFEFGIGSSFRAGSDSCEPAPE 86

Query: 80  MLAADELFFQGQMLPLRLSFSSENRQSNINELFGGNLWNRSESMDHNMLRFRNGSCSSSS 139
           M  ADELFF+G++LPLR S S +   + +NE     L  RSES++     FR        
Sbjct: 87  MSTADELFFKGRILPLRHSVSLD---AGLNE--PTRLITRSESVE-----FR-------- 146

Query: 140 SRSHYSRSSSHSNNSVSIPTNSKPRTQKNVFHSHPSPTPQIRSFSTSSHRSRS----RSS 199
            R+   RS     N+              + +S PSP PQIR  S+ + R  S    +SS
Sbjct: 147 -RTGIIRSDRKIKNNF-------------IDYSQPSPQPQIRRSSSMTARVNSIRNPKSS 206

Query: 200 SRWEFFRLGLLRTPGMELQDLKTRTTTTTATGTAAHKTTASILGVVSCKKSV-------- 259
           S W+F RLGL+RTP +EL     RTT   A  + +  ++ S     S  K +        
Sbjct: 207 SIWDFLRLGLVRTPEIEL-----RTTAGNAKLSVSRNSSCSSTSTSSNSKKIGSGESRSR 266

Query: 260 ---------DAVPATAAKNRIRNEKVLNNNNNNNNSVEIREK---EKEKERRVSHRRTFE 287
                    D   + + + ++   K+  ++        + EK   +KE++  ++ +RTFE
Sbjct: 267 NRRRSFMFSDCKCSVSTETKMAPVKIKVSSGETEEKQRMMEKKTAKKEEKSAMARKRTFE 290

The following BLAST results are available for this feature:

BLAST of CcUC02G029320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902148.1	2.4e-108	79.41	uncharacterized protein LOC120088781 [Benincasa hispida]	[more]
XP_011649316.1	1.9e-102	75.08	homeobox protein 6 [Cucumis sativus] >KGN61971.1 hypothetical protein Csa_006045...	[more]
XP_008457772.1	2.8e-101	73.87	PREDICTED: homeobox protein 6 [Cucumis melo]	[more]
XP_022947585.1	1.9e-81	64.17	uncharacterized protein LOC111451408 [Cucurbita moschata]	[more]
KAG6605199.1	2.5e-81	63.31	hypothetical protein SDJN03_02516, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC02G029320.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G029320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPT6	9.4e-103	75.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G277620 PE=4 SV=1	[more]
A0A1S3C7L1	1.4e-101	73.87	homeobox protein 6 OS=Cucumis melo OX=3656 GN=LOC103497383 PE=4 SV=1	[more]
A0A6J1G7B7	9.2e-82	64.17	uncharacterized protein LOC111451408 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]
A0A6J1JCH9	1.2e-78	63.58	probable membrane-associated kinase regulator 1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KZ54	2.1e-78	64.17	uncharacterized protein LOC111499574 OS=Cucurbita maxima OX=3661 GN=LOC111499574...	[more]

BLAST of CcUC02G029320.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67350.1	1.7e-11	31.80	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 251..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..176
None	No IPR available	PANTHER	PTHR33922	OS01G0888066 PROTEIN-RELATED	coord: 4..290
None	No IPR available	PANTHER	PTHR33922:SF2	OS01G0888066 PROTEIN	coord: 4..290

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G029320	CcUC02G029320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G029320.1-exon	CcUC02G029320.1-exon-CicolChr02:24265019..24265481	exon
CcUC02G029320.1-exon	CcUC02G029320.1-exon-CicolChr02:24265730..24266222	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G029320.1-five_prime_utr	CcUC02G029320.1-five_prime_utr-CicolChr02:24265019..24265086	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G029320.1-cds	CcUC02G029320.1-cds-CicolChr02:24265087..24265481	CDS
CcUC02G029320.1-cds	CcUC02G029320.1-cds-CicolChr02:24265730..24266222	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G029320.1	CcUC02G029320.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding