CcUC02G025430.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G025430.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein Ycf2
Location	CicolChr02: 9941764 .. 9942446 (-)
Sequence length	666
RNA-Seq Expression	CcUC02G025430.1
Synteny	CcUC02G025430.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTGTTCTATCGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGAAAGGAGAAGGAGTCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATTTATTGGGATTTCCCTATTGGGCTAGGTCATTTCGAGGCAAGCGGATCATTTATGATGAAGAGGATGAGCTTCAAGAGAATGATTCAGAATTCTTGCAGAGTGGAACCATGCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGGCTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCGGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCACATCGAGAATTCTTTGCAGATGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTACATCTATATATAAACGCTGGTTTATCAAGAATACACAAGAAAAGCACTTCGGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCTATCTAACGGAACACTATTGGATTAAATGA

mRNA sequence

ATGGATCTTAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGAAAGGAGAAGGAGTCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATTTATTGGGATTTCCCTATTGGGCTAGGTCATTTCGAGGCAAGCGGATCATTTATGATGAAGAGGATGAGCTTCAAGAGAATGATTCAGAATTCTTGCAGAGTGGAACCATGCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGGCTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCGGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCACATCGAGAATTCTTTGCAGATGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTACATCTATATATAAACGCTGGTTTATCAAGAATACACAAGAAAAGCACTTCGGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCTATCTAACGGAACACTATTGGATTAAATGA

Coding sequence (CDS)

ATGGATCTTAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGAAAGGAGAAGGAGTCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATTTATTGGGATTTCCCTATTGGGCTAGGTCATTTCGAGGCAAGCGGATCATTTATGATGAAGAGGATGAGCTTCAAGAGAATGATTCAGAATTCTTGCAGAGTGGAACCATGCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGGCTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCGGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCACATCGAGAATTCTTTGCAGATGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTACATCTATATATAAACGCTGGTTTATCAAGAATACACAAGAAAAGCACTTCGGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCTATCTAACGGAACACTATTGGATTAAATGA

Protein sequence

MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFYLTEHYWIK

Homology

[Close]

BLAST of CcUC02G025430.1 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2041 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2100

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2101 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2160

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2161 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2220

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2221 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2252

[Close]

BLAST of CcUC02G025430.1 vs. NCBI nr
Match: AXU40388.1 (hypothetical chloroplast RF2 [Gomphogyne cissiformis var. villosa] >AXU40389.1 hypothetical chloroplast RF2 [Gomphogyne cissiformis var. villosa])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2045 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2104

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2105 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2164

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2165 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2224

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2225 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2256

[Close]

BLAST of CcUC02G025430.1 vs. NCBI nr
Match: YP_009674434.1 (photosystem I assembly protein Ycf2 [Siraitia grosvenorii] >YP_009674453.1 photosystem I assembly protein Ycf2 [Siraitia grosvenorii] >QDK59433.1 photosystem I assembly protein Ycf2 [Siraitia grosvenorii] >QDK59452.1 photosystem I assembly protein Ycf2 [Siraitia grosvenorii] >QDK99988.1 Ycf2 [Siraitia grosvenorii] >QDL00008.1 Ycf2 [Siraitia grosvenorii] >QIB71550.1 Ycf2 [Siraitia grosvenorii])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2041 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2100

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2101 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2160

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2161 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2220

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2221 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2252

[Close]

BLAST of CcUC02G025430.1 vs. NCBI nr
Match: YP_009753217.1 (Ycf2 protein [Trichosanthes truncata] >YP_009753234.1 Ycf2 protein [Trichosanthes truncata] >QIT06289.1 Ycf2 protein [Trichosanthes truncata] >QIT06306.1 Ycf2 protein [Trichosanthes truncata])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2041 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2100

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2101 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2160

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2161 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2220

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2221 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2252

[Close]

BLAST of CcUC02G025430.1 vs. NCBI nr
Match: YP_009752539.1 (Ycf2 protein [Trichosanthes tubiflora] >YP_009752557.1 Ycf2 protein [Trichosanthes tubiflora] >QIT04935.1 Ycf2 protein [Trichosanthes tubiflora] >QIT04953.1 Ycf2 protein [Trichosanthes tubiflora])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2041 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2100

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2101 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2160

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2161 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2220

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2221 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2252

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 6.8e-119
Identity = 203/212 (95.75%), Postives = 208/212 (98.11%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYE+YESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2039 VDQRFLYEKYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2098

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDE++ELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2099 FPYWARSFRGKRIIYDEKEELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 2158

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD PTSIYKRWFIKNTQEKHF LLIH
Sbjct: 2159 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDSPTSIYKRWFIKNTQEKHFELLIH 2218

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2219 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2250

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 5.7e-118
Identity = 202/212 (95.28%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYE+YESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2057 VDQRFLYEKYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELG 2116

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDE+DELQ NDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2117 FPYWARSFRGKRIIYDEKDELQANDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2176

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD PTSIYKRWFIKNTQEKHF LLIH
Sbjct: 2177 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIH 2236

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2237 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2268

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 4.8e-117
Identity = 202/212 (95.28%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYE+YESEFEEG GEG LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIER N LG
Sbjct: 2059 VDQRFLYEKYESEFEEGAGEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERTNELG 2118

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2119 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 2178

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD PTSIYKRWFIKNTQEKHF LLIH
Sbjct: 2179 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIH 2238

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNG FRSNTPSESYQYLSNLF
Sbjct: 2239 RQRWLRTNSSLSNGSFRSNTPSESYQYLSNLF 2270

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 2.4e-116
Identity = 200/212 (94.34%), Postives = 206/212 (97.17%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQY+SEFEEG+GEGVLDPQ+IEEDLFNHIVWAPRIWRPWGFLFDCIE PN LG
Sbjct: 2044 VDQRFLYEQYKSEFEEGEGEGVLDPQRIEEDLFNHIVWAPRIWRPWGFLFDCIESPNELG 2103

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEED LQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2104 FPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 2163

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEK+F LLI+
Sbjct: 2164 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKYFELLIY 2223

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLS LF
Sbjct: 2224 RQRWLRTNSSLSNGFFRSNTPSESYQYLSKLF 2255

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy Swiss-Prot
Match: A0ZZ78 (Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 1.7e-114
Identity = 200/214 (93.46%), Postives = 204/214 (95.33%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D R LYE+YESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2055 VDQRNLYEKYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELG 2114

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWA SFRGKRIIYDE+DELQENDS FLQSGTMQYQ RDRSSKEQGFFRISQFIWDPAD
Sbjct: 2115 FPYWAGSFRGKRIIYDEKDELQENDSAFLQSGTMQYQARDRSSKEQGFFRISQFIWDPAD 2174

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD PTSIYKRWFIKNTQEKHF LLIH
Sbjct: 2175 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIH 2234

Query: 181  RQRWLRTNSSLS--NGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLS  NGFFRSNTPSESYQYLSNLF
Sbjct: 2235 RQRWLRTNSSLSNANGFFRSNTPSESYQYLSNLF 2268

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy TrEMBL
Match: A0A6H0ESM3 (Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.0e-119
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2041 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2100

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2101 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2160

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2161 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2220

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2221 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2252

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy TrEMBL
Match: A0A346TLZ9 (Protein Ycf2 OS=Gomphogyne cissiformis var. villosa OX=2315457 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.0e-119
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2045 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2104

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2105 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2164

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2165 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2224

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2225 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2256

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy TrEMBL
Match: A0A6C0U8W2 (Protein Ycf2 OS=Siraitia siamensis OX=2695833 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.0e-119
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2041 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2100

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2101 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2160

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2161 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2220

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2221 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2252

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy TrEMBL
Match: A0A6H0EY63 (Protein Ycf2 OS=Trichosanthes truncata OX=685060 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.0e-119
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2041 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2100

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2101 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2160

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2161 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2220

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2221 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2252

[Close]

BLAST of CcUC02G025430.1 vs. ExPASy TrEMBL
Match: A0A7D4XZJ4 (Protein Ycf2 OS=Luffa acutangula OX=56866 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.0e-119
Identity = 207/212 (97.64%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYEQYESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LG
Sbjct: 2041 VDQRFLYEQYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLG 2100

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPYWARSFRGKRIIYDEEDELQENDSEFLQSGT+QYQTRDRSSKEQGFFRISQFIWDPAD
Sbjct: 2101 FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPAD 2160

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH
Sbjct: 2161 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 2220

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF
Sbjct: 2221 RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 2252

[Close]

BLAST of CcUC02G025430.1 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-112
Identity = 197/212 (92.92%), Postives = 201/212 (94.81%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYE+YESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRP GFLFDCIERPN LG
Sbjct: 2053 VDQRFLYEKYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELG 2112

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPY A SFRGKRIIYDE+ ELQENDSEFLQSGTMQYQ RDRSSKEQGFFRISQFIWDPAD
Sbjct: 2113 FPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDRSSKEQGFFRISQFIWDPAD 2172

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD PTSIYKRWFIKNTQEKHF LLI 
Sbjct: 2173 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQ 2232

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNT SESYQYLSNLF
Sbjct: 2233 RQRWLRTNSSLSNGFFRSNTRSESYQYLSNLF 2264

[Close]

BLAST of CcUC02G025430.1 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-112
Identity = 197/212 (92.92%), Postives = 201/212 (94.81%), Query Frame = 0


Query: 1    MDLRFLYEQYESEFEEGKGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNLLG 60
            +D RFLYE+YESEFEEG+GEGVLDPQQIEEDLFNHIVWAPRIWRP GFLFDCIERPN LG
Sbjct: 2053 VDQRFLYEKYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELG 2112

Query: 61   FPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPAD 120
            FPY A SFRGKRIIYDE+ ELQENDSEFLQSGTMQYQ RDRSSKEQGFFRISQFIWDPAD
Sbjct: 2113 FPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDRSSKEQGFFRISQFIWDPAD 2172

Query: 121  PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIH 180
            PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD PTSIYKRWFIKNTQEKHF LLI 
Sbjct: 2173 PLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQ 2232

Query: 181  RQRWLRTNSSLSNGFFRSNTPSESYQYLSNLF 213
            RQRWLRTNSSLSNGFFRSNT SESYQYLSNLF
Sbjct: 2233 RQRWLRTNSSLSNGFFRSNTRSESYQYLSNLF 2264

The following BLAST results are available for this feature:

BLAST of CcUC02G025430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
QIT04093.1	1.5e-118	97.64	Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX...	[more]
AXU40388.1	1.5e-118	97.64	hypothetical chloroplast RF2 [Gomphogyne cissiformis var. villosa] >AXU40389.1 h...	[more]
YP_009674434.1	1.5e-118	97.64	photosystem I assembly protein Ycf2 [Siraitia grosvenorii] >YP_009674453.1 photo...	[more]
YP_009753217.1	1.5e-118	97.64	Ycf2 protein [Trichosanthes truncata] >YP_009753234.1 Ycf2 protein [Trichosanthe...	[more]
YP_009752539.1	1.5e-118	97.64	Ycf2 protein [Trichosanthes tubiflora] >YP_009752557.1 Ycf2 protein [Trichosanth...	[more]

BLAST of CcUC02G025430.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KT6	6.8e-119	95.75	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
B1A978	5.7e-118	95.28	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
Q0ZIV6	4.8e-117	95.28	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]
Q09WV7	2.4e-116	94.34	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]
A0ZZ78	1.7e-114	93.46	Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1	[more]

BLAST of CcUC02G025430.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ESM3	7.0e-119	97.64	Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1	[more]
A0A346TLZ9	7.0e-119	97.64	Protein Ycf2 OS=Gomphogyne cissiformis var. villosa OX=2315457 GN=ycf2 PE=3 SV=1	[more]
A0A6C0U8W2	7.0e-119	97.64	Protein Ycf2 OS=Siraitia siamensis OX=2695833 GN=ycf2 PE=3 SV=1	[more]
A0A6H0EY63	7.0e-119	97.64	Protein Ycf2 OS=Trichosanthes truncata OX=685060 GN=ycf2 PE=3 SV=1	[more]
A0A7D4XZJ4	7.0e-119	97.64	Protein Ycf2 OS=Luffa acutangula OX=56866 GN=ycf2 PE=3 SV=1	[more]

BLAST of CcUC02G025430.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.7e-112	92.92	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.7e-112	92.92	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PANTHER	PTHR33078:SF22	PROTEIN YCF2	coord: 5..212
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 5..212

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G025430	CcUC02G025430	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G025430.1-exon	CcUC02G025430.1-exon-CicolChr02:9941764..9942420	exon
CcUC02G025430.1-exon	CcUC02G025430.1-exon-CicolChr02:9942438..9942446	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G025430.1-cds	CcUC02G025430.1-cds-CicolChr02:9941764..9942420	CDS
CcUC02G025430.1-cds	CcUC02G025430.1-cds-CicolChr02:9942438..9942446	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G025430.1	CcUC02G025430.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity