CcUC02G025080.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G025080.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Location	CicolChr02: 9267368 .. 9274104 (-)
Sequence length	692
RNA-Seq Expression	CcUC02G025080.1
Synteny	CcUC02G025080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAACCAAACAAATTTTGAAGTAGGAATTAAATTAGTATTTTAACCTTATTTATTTGTGGGGGTGGGGGGAAAAAGTTGCATCCAGAGTTTTTACTCTAAGCTCCCCCTGACCGTAGCTCTTCTGCGCGCTCTCTCTCTCTCATCTCAGGTTGTGCGTTTGATCGGTGGATCAATGGCGTCGAGTCTGTTCAAAGCGCTTGTTGAATCTTCCAAAATCCCATCTTCGGCTAGAAATCTGAGTCTTGTTAGCAATCAAATCGGCCAGCACACCGCCAAATGGATGCAGGTATCCAGTAATTTCTCGCTAATCCCCCCTTTCGAAATTTACTTCTTCTACGCCTATGTTTGAGTTGATTTCTGCAGATTCTGTATTCTAGCTTACAAGTCGTTGTTCTTTCTAACTTTACCTGATAACTGATTTGGAGCTTGGGTCTGAAGGCTCCCAATTAATGTGTTGTTATTGTTTTTGTTGTTTTATTAAATCGATTGTTTTTATGTATAAATTAATTCGTGTTATTTGAAGAGAAGAGAAAGAAGTTTGTTTTCCAGTGGTATTGATGGAAGCTAAACCTTTTGGTGCTCATTTTTCATCGAAGCAAATATATATAAATTTTACGAACATTTTATTATTCACTAGCTATCGCGCCCTCCCATCCCTGGTTAGACCATGTCTTATCTTCTTCTTGTTCTGTGAGTTTTATATGTACATGAAGGTTATCAGAGAACATGTCTTTCAACCTTAAGAAATATTAACTTTTCGTTGATATTTGAGAAGTTACAAGCTATCGACTTCCTAAAGAATGTACAAAAGTAGAAAAGAGAACTCCTCCAGGTTGCATTTATGCTGCTTGCAGGCAAAAAGAGAAGAGCTGTCGTGAATAACAAGCTAGTGAATCCCCTTAAACAGATGGAAGGTTCTATGACTGTTGATGTTGATTTATAATGGCTTTCATATCTCTCAATTACTATTATAACTATTTACAAAAAAACCATTTTTATTAAGATACACGTCATGGAGTAGACAATCCCAGGCAAAAAGGAACTATGACTACCACAAGATTTTCTAATTATTAAGAACCAAAACTAAAGGATAATTACAAACTAAATAGTGGGACACTTAGAGTTTTTGAAATTAGCCAATCCTCAAACTTCCTCACAAGAATCATTGACTTTTTAAGAATCCTCCAATCTCTTTCAAACCAAAATCAAATGTACCCCAAAATAGCCAGATAAGCTGCTTGCCTCAGAATTTCCCCTTTACCACCAATGCAGGCGCAACTACTTTTCGAACCAATCTAACACCAAATTTTGAGATTTATATTTATAGAGATCTTGCCCCGAATTGTTTGCAGAGAGCTTGCTTTCAAGCTTGAACTGGTGTGTTTTGTGTAGGTATGGTTGTATGGGAAAAAGGTTGAAGCTTTGGTTCGGGGTCTGCCCTTTTTCTTAATGAGTTTGCAACCATTTTTGGAATAGTTTTGGATTGTTTGTTGTTTGAGGTTTAGCACCCATGACACAATGGATGAAGTTGTTCAGGTTGGAAATGGGGCTCTTCGCATTAGTTTATTTGGCTAGAAAGGAACAATAGAAGAATGTTTGTGCAGTTAAATGGATGGTGGGATGATATTTAGGATTTGATGTATGCTATTTTTTGGGCTCTTAACTCAAATTTAGGAACTGGTTCATGGTTATCCCTTTTTTTCCTTTGTTACCAACAGTTGGAGTTCTTTGTTGTAAATTTTCTTTAACTTCCACTTTGGTTTGGCCTCTCCAGTTAGCGTTAATGTTTTCCTTCATTTCTGTCAATAAAAATTGAGTTTTCTAGTTCAATTTCATGACTGTAGGCCACCATATAACAAGTGCAAACTTCTGAAATATTAGGAATTTCATGCATTGGTGAAGTAAACTTATTGGATTGGACATTAAGATGGTACTTGTTCATTTGAGTTGTTGAAAACTGTCACAAGCCTCCTTCTCTAATTCTGGTAAAGTTGTTTTTGAAGCTCTTGCCTATTGTTATCCTGGGTCTTTGAGTCATTATCCTTTCTCTATGTTAACATGCTTACGGCAGCACTGTCGAGGTCAGGGGCCGGATTATATACTGCTGCAGAAGCGGAATCGGGTTTCAAGGTAAGGATAGCGTGATTGGTTGATTGGTTGGAAGGTAAGGATAGCATGATTGACAGGTTGCGGGTCCCTTGGATCATGGGGCACCGCTGTCAGCCCGAGGAATGGTATGAATCGGCTTTTTCTAGCCGGGATATCCTCTCTCCGGCTGGGCGAGCGAGTTTCATACCCTACACGATGTAGGAGAGCGGGTTAGCGGGAGCCGCACGTGCGAGTTCCTCCGCATACGGCTCAAGTGGCGAAGGCCCTTTCCTTCGCGCTTGGTAAGCGCTCGCTTTAGCCAAGCTTACTGCTAGCCTATCGGCGTCAGCCAAGCTTCGACGGCGACTGCTCGTCGCTTCTGGCCACCGTGTTTGTATAGAGTGATAGATATTGCTTAATTTGGGTGCCTTGTCAATTTTGTGAGCAACACCCCAGTCGGTATTTCTCAAGAAATTAAGCTATCAAATATGAATTGCACCACCTTAAGCCTTTGGCTAAGGAATAGTCAGTTTTGGCACCTCCAATGCAATTATAGTTCTTCTTGATGCATAGGAGCAGGACTATGCCAAGTAAATATTTAATTGATCCATTTGCTACTTGAACTCCATGTTTACAATGTTAAGATAGTTTCCCAACATCTTAACAATATTCTTAAATACATGGTCTATTTGTTGATTTTAATTGGTTTCATGTCCAGTATTGCAAGGTTGTAACCTCGTGAAATAAAAGTTGATGAATATTGATAGATTGTCCATTATATCATTTCTCGTGTTTTGTCTAATCGTTTAAAGCGTATTCTTCCATCCACCATAAAAATCAACTAGCTTTCGTTGCCAATAGAAAAATGTTGGATGCCTCCTCAATAGCGAATGAACTAATTGATTGATGATTGGACTTTCTCTAGGAGGGAAGGAGTGGTTCTCAAACTAGACCTAGGATAGGCTTTTGATATTGTTGATTAGGGCTTTTGGATGCCCTTCTTCAGGCTAAGGGCTTTGGTACTCTCTGGCAATCTAGGTAAAAGGTTGTATAGCTAGTGCCAACCAAGGTTTGAAATATTGATGTTGATGGAAATATCAAGGTCCCAATTTTATAGAAATATCAATGCAAATTTCAAGAAACTCTATGAAAATTGATGAAAATTGTTATAATTAGTTAATGAAGCTTTCGTTGGGGCTTATTTAGACTATAATTGACCATTTTTAATAATCACTTCTATAAAGCAAGACAACATTTAGATTTATTGTAGATGTATGTGTAGTTGTCGATGCAAGAGCAGAAATGGAAAAATAATTACAAAATAATATAAATTTTAGGAATATTTTGAGGTGAAATGATGTGAAAAAGAAAGATTTGGATGGTAAAAGAAAAAAAAAAACTCACATCAAGTCAATTTTGAGGTGAAATGATGTGAATATTTAATGAAAAAGTTGAATGAGGTTAAAAATAAAAATAGTGGTTTTTCCGAATTCAATTTCTTTAGAAATGAAAGTTTTGAATTGAAATTAAACTGAAAATTGAGAAAAGTTGGAAATTAGAAAAAGTAACCATTGGAAAAGCTTCATCTTTAGTTAGAAATGATAGTGGTGTGTAAAACTATACAATTCTGAGTAATCAAGACTATAAAATTGAAAAACTTGAACTAACGTAGCTAATTTCAAAAGAGATCAATATTTTCTCAAAATTTTGAAATCTTGAAATCTTTTCAAGGCATCAATGGAAATTTTCCACCGTGGTGCCAACAGCTCTATCATCATAAATGGTAGGCCTCTAGGGAAGATCTATCCATCTCCTGAAATTAGACAAGGTGACCCCTCTCACCTTTCTTATTTATTTTGGTTTATGATTGCTTTAGTCACCTTTTGGACCATAGTGCCCATTTGGATACTATTGGGAGGGGACCCATCCAATTGGTACATCCTCTTTCTATTTGAACTACTTACAATTTGTTTATGACACCCTTTTGTTTTCGACTGTGGATGGGATTGTTTTAGTACGTCTTTTTGAGATTGTTAATATTTTTGAGAGGGCATTTGGTTTGAAAATCAATCTAAGAGTGCATTGCTTGGGTTTCATATTGTTGACTCTAAGATGAAACGGATGTTGTCTACGTTTGAATGCAAATAGGGTCACTAGCCATTGACCTATCTAGGTCTTCCCTAGGGAGGTAATTCTAAAATTGTTACATTGAGGGCATTCAACACAAGCTTAATAATTGAATGTGTGCTTTTATCACAAAGAGTGGTAGACAGACACTTATCCAGTCTACTCTGGTTAGTGTGCCAACTTATTATTTATGTTTGTTTCGTGGTCCAACTAAAACTACAATAATATTGGATAGTTGATTCGAGATTTTTTCTGGGAAGGTTCTTGTGGTGATGGCAGTATGGATAATGTGAATTGGGAGACCATTCAACTCCTTAAATTGAGGGGTGGTCTTGACATTGGTAATTTTCAGCATCGTGATTATGATTTTGTGGGTTATTGACCTGGTTGCTATTTTATTTATTTTTGGATGAAGATCTGGTTGCTAGTTGGGCTGGCATTCTCTTGGTAATGGCCAATGGGATCTCTCTACTTTCTGGAAGACCTATTAGCTTAGTTGTGGTTCAATTATGGTTGTTTTCCCTCCACGTTTTTGCCTTGCTCTCTATCCTGATGCTATGGTGGCTGATGTGTGGGTTTAGGTAACTGGTGCTTGGGATGTGCGTCTTCGCCCCAAACTTAATGATTTAGAAATGATTGAATGGCCTAATCTTTCTCATCTTTTGTCCTCAGTCACCTTCAGAACTCTCCTGATTCATGGACTTGGCCTCTTGCACCATCTATCAGTTACTTTGTTAAATCACTTATAGCTTCTCTTACTTGATTTCAAAATGGATACCGTGTGCCTTATGAATCTACAGGAAATCACGAGCGAGACGCTCAGATTTTTTACGAATGTTCTTTCCAACCCAACATTTCATTGCCTTGGAGTGGCTATGCCACTGTTCTAAGCATTTGTATTTCAAAGGAAACAATTATCTTTGATTGTTCTAACAGTTGTCTAATCTGTTACACGGTTGCAGCATGGAGCATTCTTATGCACTTGAAGCTTAAATCAACCCTTCTAGTGTTAATCCAAAAAAAATCAACCCTTCTAGTGTGCTTGGTTGGAAGAGTAGGGGCCTAGTAAACAAGTCAGAGAGAATGTCATTCGCAGAGGATTTTTATCATTCTAGTGATGGATCCGATCAGCCCTTGGTTGAAATATTAGACTAGAGGACTCTTTGTTGCAAAATATATTACATCCATGTCCATTAAATAGGATTGAGTCAGTCTAACGATGGAGGTTTTCCCTATCTTGTAACATGTACAACTTCGTAGATTTTTAAATTATTCTAGATAACCTGGACTTCCTTCGAATGCTCTAGAGTATATGAGAACTATCCAAGGTTTTTTATTATTTTAAATCTAGGATCCTATCCCACTGCAGATCAATTCTTCACAGCCCTCGTGCATTTTTCACATTTTCAAGAAGTTGTAAGTTGTGAAATTAGGGTCCCTTCCATGTTTTGACAATTAAAAGAATTGTGCTTGCTTGGAGTCTTCAATTAGGTTATTCATCAAGTTTGTGATTTCATGAACTTCTTACTGATGTACATTTCACAACTAATTATTTTGGAACTGAGGTGGACCTTGGGTATTATAAACAATGATAACTTGTAACAAAGCACTGTTTTATCCCAATATTCTTTTTACCTTGCCTGTCATCTCCCACATTTTCAAGTAAAATCTCTTTACTTCATTTTACTTATGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTGATTACTGTTCTCTATTGATAATTGTGATACATTGTTTCTCATGTTTGAATCTTGAATTTTCTTTGGCATGACCTCAAAATATTTTGCTTTTTGCCATCTATATCCTTGAATTATTGAGTCAATCAAGTTCCACGGACTGTTGAGACATGATATAGTTCTTTCTCTATATGTTTCGTTTACTTCTAAGAAATATCCTTCCATTTTCTGGGACTCAATATTATTCTTTGCGACCCTGTCCAATACTGAAGGATATATTTGTTTTATTTTATTTCCATTCCTAGGATACAAGTAAGAAATCACCGATGGGGTTGATCAACGAGGTTCCACCAATCAAGGTCGAAGGCCGAATCGTTGCTTGTGAGGGAGGTTAGTACATCTCCATACATTTATCCATACATTTCCAAGTAAACAATTTATTAAGGAAGGTGTGGTTCCTTATTTGCATTCAAACTCTTGCTGATTGCAGACAGCAATCCTGCCCTTGGACATCCAATCGAGTTCATATGCCTCGATCGGGAGGAGCCTGCCGTGTGCAAGTACTGTGGCCTGCGGTATACACAGGACCATCATCACTAGAAAATCTGCAAGTGATCATTCCAGCCAGCAACCCTGAACTTGGAAAGATATAATACCCTACCTTTCCAAACTTGACTTCTGTAATGGTTATGCTCTTGCCTTCATAAATAGGAATTTGTGGATTCCATTCACTCGCACTTTGGCCAGGTCCATTGTCTTTGCCAAATTTATTTCATTGCTGTCTAATGACCCTATCTTGTTGACTCTA

mRNA sequence

CTAAAACCAAACAAATTTTGAAGTAGGAATTAAATTAGTATTTTAACCTTATTTATTTGTGGGGGTGGGGGGAAAAAGTTGCATCCAGAGTTTTTACTCTAAGCTCCCCCTGACCGTAGCTCTTCTGCGCGCTCTCTCTCTCTCATCTCAGGTTGTGCGTTTGATCGGTGGATCAATGGCGTCGAGTCTGTTCAAAGCGCTTGTTGAATCTTCCAAAATCCCATCTTCGGCTAGAAATCTGAGTCTTGTTAGCAATCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCGATGGGGTTGATCAACGAGGTTCCACCAATCAAGGTCGAAGGCCGAATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGACATCCAATCGAGTTCATATGCCTCGATCGGGAGGAGCCTGCCGTGTGCAAGTACTGTGGCCTGCGGTATACACAGGACCATCATCACTAGAAAATCTGCAAGTGATCATTCCAGCCAGCAACCCTGAACTTGGAAAGATATAATACCCTACCTTTCCAAACTTGACTTCTGTAATGGTTATGCTCTTGCCTTCATAAATAGGAATTTGTGGATTCCATTCACTCGCACTTTGGCCAGGTCCATTGTCTTTGCCAAATTTATTTCATTGCTGTCTAATGACCCTATCTTGTTGACTCTA

Coding sequence (CDS)

ATGGCGTCGAGTCTGTTCAAAGCGCTTGTTGAATCTTCCAAAATCCCATCTTCGGCTAGAAATCTGAGTCTTGTTAGCAATCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCGATGGGGTTGATCAACGAGGTTCCACCAATCAAGGTCGAAGGCCGAATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGACATCCAATCGAGTTCATATGCCTCGATCGGGAGGAGCCTGCCGTGTGCAAGTACTGTGGCCTGCGGTATACACAGGACCATCATCACTAG

Protein sequence

MASSLFKALVESSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH

Homology

[Close]

BLAST of CcUC02G025080.1 vs. NCBI nr
Match: XP_023511819.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like [Cucurbita pepo subsp. pepo] >KAG6571206.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011009.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.8 bits (517), Expect = 7.3e-49
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MASSLFKALVE SSKIPSSAR+LSLVSNQIGQHTAKWMQDTSKKSPM LINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. NCBI nr
Match: XP_038900460.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Benincasa hispida])

HSP 1 Score: 203.4 bits (516), Expect = 9.5e-49
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MASSLFKALVE SSKIPSSARNLSLV+NQIGQHTAKWMQDTSKKSPM LINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKIPSSARNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RIVACEGD+NPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDNNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. NCBI nr
Match: XP_022943963.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita moschata])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MASSLFKALVE SSKIPSSAR+LSLVSNQIGQHTAKWMQDTSKKSPM LINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RIVACEGDSNP LGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPGLGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. NCBI nr
Match: XP_022986645.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita maxima])

HSP 1 Score: 201.8 bits (512), Expect = 2.8e-48
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MASSLFKALVE SSK PSSAR+LSLVSNQIGQHTAKWMQDTSKKSPM LINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. NCBI nr
Match: XP_022148513.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Momordica charantia])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MAS+LFK ++E SSK PSSARNLSLVSNQIGQHTAKWMQDTSKKSPM LINEVPPIKVEG
Sbjct: 1   MASTLFKTIIESSSKFPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RI+ACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIIACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. ExPASy Swiss-Prot
Match: Q9M9M6 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g03070 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-40
Identity = 78/110 (70.91%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 1   MASSLFKALVESSKIPSSARNLSLVSNQ--------IGQHTAKWMQDTSKKSPMGLINEV 60
           MAS+L KAL+ S  +PSS RN S+ + Q        +G HTAKWMQD SKKSPM LI+EV
Sbjct: 1   MASNLLKALIRSQILPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISEV 60

Query: 61  PPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           PPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY QDHHH
Sbjct: 61  PPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]

BLAST of CcUC02G025080.1 vs. ExPASy TrEMBL
Match: A0A6J1FXJ3 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111448533 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MASSLFKALVE SSKIPSSAR+LSLVSNQIGQHTAKWMQDTSKKSPM LINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RIVACEGDSNP LGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPGLGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. ExPASy TrEMBL
Match: A0A6J1JEL4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111484323 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MASSLFKALVE SSK PSSAR+LSLVSNQIGQHTAKWMQDTSKKSPM LINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. ExPASy TrEMBL
Match: A0A6J1D4A8 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111017141 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.1e-48
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MAS+LFK ++E SSK PSSARNLSLVSNQIGQHTAKWMQDTSKKSPM LINEVPPIKVEG
Sbjct: 1   MASTLFKTIIESSSKFPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RI+ACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIIACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. ExPASy TrEMBL
Match: A0A1S3CI88 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103501074 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MASSLFK L+E SS IPSS RNLSLV+NQIGQHTAKWMQDTSKKSPM LINEVPPIKVEG
Sbjct: 1   MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. ExPASy TrEMBL
Match: A0A0A0LNG2 (zf-CHCC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432800 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.8e-46
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 1   MASSLFKALVE-SSKIPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMGLINEVPPIKVEG 60
           MASSLFK L+E SS IPSS RNLSLV+NQIGQHTAKWMQDTSKKSPM LINEVPPIKV G
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQ HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]

BLAST of CcUC02G025080.1 vs. TAIR 10
Match: AT3G03070.1 (NADH-ubiquinone oxidoreductase-related )

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-41
Identity = 78/110 (70.91%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 1   MASSLFKALVESSKIPSSARNLSLVSNQ--------IGQHTAKWMQDTSKKSPMGLINEV 60
           MAS+L KAL+ S  +PSS RN S+ + Q        +G HTAKWMQD SKKSPM LI+EV
Sbjct: 1   MASNLLKALIRSQILPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISEV 60

Query: 61  PPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103
           PPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY QDHHH
Sbjct: 61  PPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

The following BLAST results are available for this feature:

BLAST of CcUC02G025080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511819.1	7.3e-49	97.09	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like [Cucur...	[more]
XP_038900460.1	9.5e-49	96.12	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Benincasa ...	[more]
XP_022943963.1	2.1e-48	96.12	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita ...	[more]
XP_022986645.1	2.8e-48	96.12	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita ...	[more]
XP_022148513.1	1.1e-47	92.23	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Momordica ...	[more]

BLAST of CcUC02G025080.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9M6	1.7e-40	70.91	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidop...	[more]

BLAST of CcUC02G025080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXJ3	1.0e-48	96.12	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucurbit...	[more]
A0A6J1JEL4	1.3e-48	96.12	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucurbit...	[more]
A0A6J1D4A8	5.1e-48	92.23	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Momordic...	[more]
A0A1S3CI88	1.9e-47	93.20	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucumis ...	[more]
A0A0A0LNG2	4.8e-46	91.26	zf-CHCC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432800 PE=...	[more]

BLAST of CcUC02G025080.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03070.1	1.2e-41	70.91	NADH-ubiquinone oxidoreductase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.260.40	q5lls5 like domains	coord: 49..98 e-value: 8.3E-16 score: 59.5
None	No IPR available	PANTHER	PTHR13156:SF1	BNAC04G49950D PROTEIN	coord: 1..102
None	No IPR available	PANTHER	PTHR13156	NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT	coord: 1..102
IPR019401	Zinc finger, CHCC-type	PFAM	PF10276	zf-CHCC	coord: 59..96 e-value: 6.1E-15 score: 55.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G025080	CcUC02G025080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G025080.1-exon	CcUC02G025080.1-exon-CicolChr02:9267368..9267685	exon
CcUC02G025080.1-exon	CcUC02G025080.1-exon-CicolChr02:9267786..9267870	exon
CcUC02G025080.1-exon	CcUC02G025080.1-exon-CicolChr02:9273816..9274104	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G025080.1-three_prime_utr	CcUC02G025080.1-three_prime_utr-CicolChr02:9267368..9267575	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G025080.1-cds	CcUC02G025080.1-cds-CicolChr02:9267576..9267685	CDS
CcUC02G025080.1-cds	CcUC02G025080.1-cds-CicolChr02:9267786..9267870	CDS
CcUC02G025080.1-cds	CcUC02G025080.1-cds-CicolChr02:9273816..9273929	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G025080.1-five_prime_utr	CcUC02G025080.1-five_prime_utr-CicolChr02:9273930..9274104	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G025080.1	CcUC02G025080.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
cellular_component	GO:0005747	mitochondrial respiratory chain complex I