CcUC02G024820.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G024820.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein Ycf2
Location	CicolChr02: 8660173 .. 8660571 (-)
Sequence length	399
RNA-Seq Expression	CcUC02G024820.1
Synteny	CcUC02G024820.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACAATGGAAGCTAGAGTTAGGGTTAGCGCCATCAAGCAAATGGCAGAGAAAATGTTGGCAAATGCCATATTTGTATGCTATGGCCTTCTTTTAAATGAAGTAGTTGGTGGAATTATGGTTGATTGCATTGGATGGCGGGTAGTCCTTATTAGTCAAGCTTTGGCTCCCGAACGGGAACTGGATCCGTCCAAAGGGAAACGGATTCCCAATCTCGATCTCATAAGTATCATACCAAATCCTATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGAAGATTTGTGGCTTGCGGTTTGGATCCTATAGAGTTTTTATATTTGAAGGAGAGATATGGTATAGTTCCATTTTAAGGATTTGTTTTGGAAGATAG

mRNA sequence

ATGGGCACAATGGAAGCTAGAGTTAGGGTTAGCGCCATCAAGCAAATGGCAGAGAAAATGTTGGCAAATGCCATATTTGTATGCTATGGCCTTCTTTTAAATGAAGTAGTTGGTGGAATTATGGTTGATTGCATTGGATGGCGGGTAGTCCTTATTAGTCAAGCTTTGGCTCCCGAACGGGAACTGGATCCGTCCAAAGGGAAACGGATTCCCAATCTCGATCTCATAAGTATCATACCAAATCCTATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGAAGATTTGTGGCTTGCGGTTTGGATCCTATAGAGTTTTTATATTTGAAGGAGAGATATGGTATAGTTCCATTTTAAGGATTTGTTTTGGAAGATAG

Coding sequence (CDS)

ATGGGCACAATGGAAGCTAGAGTTAGGGTTAGCGCCATCAAGCAAATGGCAGAGAAAATGTTGGCAAATGCCATATTTGTATGCTATGGCCTTCTTTTAAATGAAGTAGTTGGTGGAATTATGGTTGATTGCATTGGATGGCGGGTAGTCCTTATTAGTCAAGCTTTGGCTCCCGAACGGGAACTGGATCCGTCCAAAGGGAAACGGATTCCCAATCTCGATCTCATAAGTATCATACCAAATCCTATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGAAGATTTGTGGCTTGCGGTTTGGATCCTATAGAGTTTTTATATTTGAAGGAGAGATATGGTATAGTTCCATTTTAAGGATTTGTTTTGGAAGATAG

Protein sequence

MGTMEARVRVSAIKQMAEKMLANAIFVCYGLLLNEVVGGIMVDCIGWRVVLISQALAPERELDPSKGKRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKEKICGLRFGSYRVFIFEGEIWYSSILRICFGR

Homology

[Close]

BLAST of CcUC02G024820.1 vs. NCBI nr
Match: YP_009724461.1 (hypothetical chloroplast RF21 [Senegalia senegal] >YP_009724480.1 hypothetical chloroplast RF21 [Senegalia senegal] >QGT77097.1 hypothetical chloroplast RF21 [Senegalia senegal] >QGT77116.1 hypothetical chloroplast RF21 [Senegalia senegal])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 65   SKGKRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKEKICGLRFGSYRVFIFEGEIWY 123
            SK K +  +DLISIIPNPINRIAFSRNTRHLSHTSK     +R    +++++E EI Y
Sbjct: 1446 SKKKYLNLIDLISIIPNPINRIAFSRNTRHLSHTSKAIYSLIR--KRKIYLYEEEIMY 1501

[Close]

BLAST of CcUC02G024820.1 vs. NCBI nr
Match: YP_009370624.1 (hypothetical chloroplast RF21 [Adoxa moschatellina] >YP_009370639.1 hypothetical chloroplast RF21 [Adoxa moschatellina] >API68326.1 hypothetical chloroplast RF21 [Adoxa moschatellina] >API68341.1 hypothetical chloroplast RF21 [Adoxa moschatellina])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 68   KRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            K+  N+DLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1460 KKYLNIDLISIIPNPINRITFSRNTRHLSHTSKE 1493

[Close]

BLAST of CcUC02G024820.1 vs. NCBI nr
Match: YP_009326561.1 (hypothetical chloroplast RF21 [Sinadoxa corydalifolia] >YP_009326577.1 hypothetical chloroplast RF21 [Sinadoxa corydalifolia] >APD52611.1 hypothetical chloroplast RF21 [Sinadoxa corydalifolia] >APD52627.1 hypothetical chloroplast RF21 [Sinadoxa corydalifolia])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 68   KRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            K+  N+DLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1468 KKYLNIDLISIIPNPINRITFSRNTRHLSHTSKE 1501

[Close]

BLAST of CcUC02G024820.1 vs. NCBI nr
Match: YP_009370705.1 (hypothetical chloroplast RF21 [Tetradoxa omeiensis] >YP_009370721.1 hypothetical chloroplast RF21 [Tetradoxa omeiensis] >API68407.1 hypothetical chloroplast RF21 [Tetradoxa omeiensis] >API68422.1 hypothetical chloroplast RF21 [Tetradoxa omeiensis])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 68   KRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            K+  N+DLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1460 KKYLNIDLISIIPNPINRITFSRNTRHLSHTSKE 1493

[Close]

BLAST of CcUC02G024820.1 vs. NCBI nr
Match: YP_009764609.1 (hypothetical chloroplast RF21 [Amorpha fruticosa] >YP_009764626.1 Ycf2 [Amorpha fruticosa] >QVX28345.1 hypothetical protein RF2 [Amorpha roemeriana] >QIS94886.1 hypothetical chloroplast RF21 [Amorpha fruticosa] >QIS94903.1 Ycf2 [Amorpha fruticosa] >QVX28362.1 hypothetical protein RF2 [Amorpha roemeriana])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 65   SKGKRIPNLDLISIIPNPINRIAFSRNTRHLSHTSK 101
            SK K +  +DLISIIPNPINRIAFSRNTRHLSHTSK
Sbjct: 1447 SKNKYLNLIDLISIIPNPINRIAFSRNTRHLSHTSK 1482

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy Swiss-Prot
Match: A4QLE9 (Protein Ycf2 OS=Lepidium virginicum OX=59292 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-09
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 63   DPSKGKR-------IPNLDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            DP++ K+       I  +DLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1444 DPARSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKE 1489

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy Swiss-Prot
Match: A4QKE8 (Protein Ycf2 OS=Barbarea verna OX=50458 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 66   KGKRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            K  +I  +D+ISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1457 KDLKINFIDIISIIPNPINRITFSRNTRHLSHTSKE 1492

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy Swiss-Prot
Match: P08973 (Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 73   LDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            LDLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1304 LDLISIIPNPINRITFSRNTRHLSHTSKE 1332

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy Swiss-Prot
Match: Q9B1K6 (Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-08
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 65   SKGKRIPNLDLISIIPNPINRIAFSRNTRHLSHTSK 101
            SK K +  +DLISIIPNPINRIAFSRN RHLSHTSK
Sbjct: 1449 SKKKYLNLIDLISIIPNPINRIAFSRNMRHLSHTSK 1484

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy Swiss-Prot
Match: Q2PMM5 (Protein Ycf2 OS=Glycine max OX=3847 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-08
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 65   SKGKRIPNLDLISIIPNPINRIAFSRNTRHLSHTSK 101
            SK K +  +DLISIIPNPINRIAFSRNTRHLSH SK
Sbjct: 1449 SKKKYLNLIDLISIIPNPINRIAFSRNTRHLSHPSK 1484

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy TrEMBL
Match: A0A650F3Z0 (Protein Ycf2 OS=Senegalia senegal OX=138043 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.7e-08
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 65   SKGKRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKEKICGLRFGSYRVFIFEGEIWY 123
            SK K +  +DLISIIPNPINRIAFSRNTRHLSHTSK     +R    +++++E EI Y
Sbjct: 1446 SKKKYLNLIDLISIIPNPINRIAFSRNTRHLSHTSKAIYSLIR--KRKIYLYEEEIMY 1501

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy TrEMBL
Match: A0A1J0PLB6 (Protein Ycf2 OS=Sinadoxa corydalifolia OX=122250 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 68   KRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            K+  N+DLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1468 KKYLNIDLISIIPNPINRITFSRNTRHLSHTSKE 1501

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy TrEMBL
Match: A0A1W5PW46 (Protein Ycf2 OS=Tetradoxa omeiensis OX=179091 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 68   KRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            K+  N+DLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1460 KKYLNIDLISIIPNPINRITFSRNTRHLSHTSKE 1493

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy TrEMBL
Match: A0A1W5PXL8 (Protein Ycf2 OS=Adoxa moschatellina OX=4208 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 68   KRIPNLDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            K+  N+DLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1460 KKYLNIDLISIIPNPINRITFSRNTRHLSHTSKE 1493

[Close]

BLAST of CcUC02G024820.1 vs. ExPASy TrEMBL
Match: A0A6H0DZB2 (Protein Ycf2 OS=Amorpha fruticosa OX=48131 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 65   SKGKRIPNLDLISIIPNPINRIAFSRNTRHLSHTSK 101
            SK K +  +DLISIIPNPINRIAFSRNTRHLSHTSK
Sbjct: 1447 SKNKYLNLIDLISIIPNPINRIAFSRNTRHLSHTSK 1482

[Close]

BLAST of CcUC02G024820.1 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-09
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 73   LDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            +DLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1468 IDLISIIPNPINRITFSRNTRHLSHTSKE 1496

[Close]

BLAST of CcUC02G024820.1 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-09
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 73   LDLISIIPNPINRIAFSRNTRHLSHTSKE 102
            +DLISIIPNPINRI FSRNTRHLSHTSKE
Sbjct: 1468 IDLISIIPNPINRITFSRNTRHLSHTSKE 1496

The following BLAST results are available for this feature:

BLAST of CcUC02G024820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009724461.1	1.8e-07	60.34	hypothetical chloroplast RF21 [Senegalia senegal] >YP_009724480.1 hypothetical c...	[more]
YP_009370624.1	3.4e-06	85.29	hypothetical chloroplast RF21 [Adoxa moschatellina] >YP_009370639.1 hypothetical...	[more]
YP_009326561.1	3.4e-06	85.29	hypothetical chloroplast RF21 [Sinadoxa corydalifolia] >YP_009326577.1 hypotheti...	[more]
YP_009370705.1	3.4e-06	85.29	hypothetical chloroplast RF21 [Tetradoxa omeiensis] >YP_009370721.1 hypothetical...	[more]
YP_009764609.1	3.4e-06	83.33	hypothetical chloroplast RF21 [Amorpha fruticosa] >YP_009764626.1 Ycf2 [Amorpha ...	[more]

BLAST of CcUC02G024820.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QLE9	9.9e-09	67.39	Protein Ycf2 OS=Lepidium virginicum OX=59292 GN=ycf2-A PE=3 SV=1	[more]
A4QKE8	2.9e-08	77.78	Protein Ycf2 OS=Barbarea verna OX=50458 GN=ycf2-A PE=3 SV=1	[more]
P08973	2.9e-08	96.55	Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2	[more]
Q9B1K6	3.8e-08	80.56	Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1	[more]
Q2PMM5	3.8e-08	80.56	Protein Ycf2 OS=Glycine max OX=3847 GN=ycf2-A PE=3 SV=1	[more]

BLAST of CcUC02G024820.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A650F3Z0	8.7e-08	60.34	Protein Ycf2 OS=Senegalia senegal OX=138043 GN=ycf2 PE=3 SV=1	[more]
A0A1J0PLB6	1.6e-06	85.29	Protein Ycf2 OS=Sinadoxa corydalifolia OX=122250 GN=ycf2 PE=3 SV=1	[more]
A0A1W5PW46	1.6e-06	85.29	Protein Ycf2 OS=Tetradoxa omeiensis OX=179091 GN=ycf2 PE=3 SV=1	[more]
A0A1W5PXL8	1.6e-06	85.29	Protein Ycf2 OS=Adoxa moschatellina OX=4208 GN=ycf2 PE=3 SV=1	[more]
A0A6H0DZB2	1.6e-06	83.33	Protein Ycf2 OS=Amorpha fruticosa OX=48131 GN=ycf2 PE=3 SV=1	[more]

BLAST of CcUC02G024820.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	3.5e-09	93.10	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	3.5e-09	93.10	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 72..99 e-value: 7.4E-9 score: 33.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G024820	CcUC02G024820	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G024820.1-exon	CcUC02G024820.1-exon-CicolChr02:8660173..8660571	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G024820.1-cds	CcUC02G024820.1-cds-CicolChr02:8660173..8660571	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G024820.1	CcUC02G024820.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity