CcUC02G017330.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G017330.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	protein LAX PANICLE 2-like
Location	CicolChr02: 220140 .. 222937 (-)
Sequence length	982
RNA-Seq Expression	CcUC02G017330.1
Synteny	CcUC02G017330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCATTCCATTTTGTTGTTTTTGGCAACATCTTGAGCTTCGCTAATTAATAGATTTGGAAAGCTGTGGGAAAATGGGTTCCCCTTGTTCCCATGATCAGTGGCTAGAGTTGAGTTTAGGATTGAAAGGCACAAAGAAGAAATTACAAGAAAAAGAAGAAGAGGAAACAAAGTTGCACTGCCAAAACACTTCTCATGAGCATTTGGATGAGGAAATTAATGAGGATTGTTTGGAGTTGAGGCTTCAAATAGGGCCTAACAAAAATTACAATATGGGATTAATGGATTTAATGTATCATCAAAACAAGAAGAAGCAAAAAGGGGCATTTCATAGTGATTGTTATTATAATTATTATTCTTCACTCACCAACTTTCGCCTTTCTTCTTCATCACCATCTCCCAACTCTGCTGGTTTCTGGTTCTCACTACTCTCTTCACCCAACAGGTCACCTTCCTAAACCCTCTCTCTCTCTCTTTAATTTATTCATCATCATCTCTTCAAAAGAAAAGCTTTGATTTTCTTTCCTAAAATAAAATAGAATTTCTTTTTCTTTTCTTCTGCTAAAGAATTTATTTTGTGAAGCTTTTTTTTTACCACACATGGAAGAAGGAGCGAATCGCTAACTTTAAAGTTAGCGGTACAAATTTAAAATTTTATGACATTGTTCTTCTTAATAATTTGCATTTAATTGTGGATTTTTTTCTTTTTTTCCTGACCATATATGGGAAAAAGAAGAGAACTTCTCACTTCAAAATCCATACAAACAAACTTTGTATCATATTGGTCACTTTTGGTGTAATAATATGAAGTTAATTATGAGAATGTTGGATTATTAATTATAATTAATAATAATTTGCATTTTGAAATGTGATAGGAAGGGAGGAGCAGCACTGCCTCAGATACCCAAACCCTACATTAGAGTCAAGTAAGTGACAGCATTCAAAAACGCCATCAAATCACACAAACCCTTTCAAATTGCCAAGTTTATTGTATACTATTTTTTGTTTTGTTTATTTTACAAAATCTTTCTTTTAATTTCTTAAATAAATGTTATAAAACTTTGACCATCACATATTGAATATGCATTTTTTTAAATACAGTTAGAGGTAGAGGGTGAATATGCAATCTTACCTATATAAGTTTTAATTTGTTAAGATAAATGTTGTAGGAAAGGATGGATATTAAGTGAACAAAGTGAGAAATTAATTTATACTCTAAATTTTAAGTGTTGTGTGAGTTAAAACTCGAAATCGATATTTGTATCAATTTAAATTCTAAATTTCACGATTACTTGTTTAACAATTATTTTATAACTATCTTTCTTTGATTTTCTTTTAACAATTGTATCAATAAAACTCAAAACTAATGTTTGAGGTATATAATTCACAATTTTCAAACAAAACTCTAATGGAATTGAAGTTTTAAATTGAGTCACTAATTGAGATGAGGTATATAATTTTTTGTTTTTGAACTGTGAAAAAGTTGAAAGATGTAAGTTTGAGCTAAGGAAAAGTGGAGTTGAAGCATTAGAATAATAATAATAATAATAATTTTGTGTATTTGGGTCTGAAATCAAATGATGAGAAATGGACTGGGAAAAGGAAAAGCTGAGTGTTTGGGTTATGGATTTTGGTGAAAAACTGTTTAGGGATGAGAAGATGACAGTGTTGATGGTGAAGAAGTACCTGCTCACAAAGTTGGGTCTCTCCAATCAAGCTCAGGTAACAAACCAAAACTATCTCATTTCTTTTAAATAATTTAATTTATTAATTATAATATATTACAATAACACAAGTATATTATATTTGGGTGCCATCAATCTTACGTAACCAAACCTTTTTACTGTTTTTTTTTTTTTAAATAATGAAATCAAATATTATTCATACAATAATATATTCCTTTTTTATTCAATTTTGGCATGTTATTAAATTTTCTTTTAACTTTATAATATTGATCTTAATTTTTATTTAAATTTCTTTTTTTATTAATGTGAATTTGCATAAAAATCGAAAATGCAACTCATATTTAAAGAAATGAAGTTGAGAACCTTACAAAAAAAATCATCTACTTGGTCCAAAGGGCACATGCATGGGTTAAAAATGATTAATTAATTTTGTGTCTTAGTTTTTAATATTTATTCTCTCTCTAATAATTACAAAGTCAGAGGGGTTTTTGAAAAAAAGTGAGGGATGAAGCATGCATGAGATGTCTTAGTCAAATGTCTTAGTGAGTGTTGGGATATGATGCATGCAAAATGTTGCAAGTGAATTAATGAAGAAGAGAGAGAGAGAGAGAGGGGTTTAATGATCAATAATAATGAATTGAGGGGTTGTTTTATTATTTTCTTAAGTTTTGAAGTTTTTATTTGGTTTTTTTATGTGGAGGTTGAATTATGGTGCATGGGAGAGAGGCTGTTGCAGACTCAGTCACTAAAGCAAGTGAGAGATGGAATTTGGGTGCCTAAGTTGGTGGAATTCCTAAATTCAAATTCATCATTATCAACTTCTTCAATATTTCACCATTGCTCTCATCTTATGTCTTTGCATTATGGAACAACATCCTTCTTCTAACTCTCTCTCTATATATATATATATATATATATTTATTGTGGACTCAAATTAGATGTAAGTATAGTACTAAATTTCAAATGACGAGGGTCGATATTTCTTTTGCTATTTACTTATATTTATGTGTCCGAAATCAACCATATAAAAGGTAAATTAAGAATATATAGTATGAAAAGTATGTTGAGGGAATATTAGTCTAATTTATTTAAAGAAGTGAAATGATTGTTTATTA

mRNA sequence

CCCATTCCATTTTGTTGTTTTTGGCAACATCTTGAGCTTCGCTAATTAATAGATTTGGAAAGCTGTGGGAAAATGGGTTCCCCTTGTTCCCATGATCAGTGGCTAGAGTTGAGTTTAGGATTGAAAGGCACAAAGAAGAAATTACAAGAAAAAGAAGAAGAGGAAACAAAGTTGCACTGCCAAAACACTTCTCATGAGCATTTGGATGAGGAAATTAATGAGGATTGTTTGGAGTTGAGGCTTCAAATAGGGCCTAACAAAAATTACAATATGGGATTAATGGATTTAATGTATCATCAAAACAAGAAGAAGCAAAAAGGGGCATTTCATAGTGATTGTTATTATAATTATTATTCTTCACTCACCAACTTTCGCCTTTCTTCTTCATCACCATCTCCCAACTCTGCTGGTTTCTGGTTCTCACTACTCTCTTCACCCAACAGGAAGGGAGGAGCAGCACTGCCTCAGATACCCAAACCCTACATTAGAGTCAAGGATGAGAAGATGACAGTGTTGATGGTGAAGAAGTACCTGCTCACAAAGTTGGGTCTCTCCAATCAAGCTCAGGTTGAATTATGGTGCATGGGAGAGAGGCTGTTGCAGACTCAGTCACTAAAGCAAGTGAGAGATGGAATTTGGGTGCCTAAGTTGGTGGAATTCCTAAATTCAAATTCATCATTATCAACTTCTTCAATATTTCACCATTGCTCTCATCTTATGTCTTTGCATTATGGAACAACATCCTTCTTCTAACTCTCTCTCTATATATATATATATATATATATTTATTGTGGACTCAAATTAGATGTAAGTATAGTACTAAATTTCAAATGACGAGGGTCGATATTTCTTTTGCTATTTACTTATATTTATGTGTCCGAAATCAACCATATAAAAGGTAAATTAAGAATATATAGTATGAAAAGTATGTTGAGGGAATATTAGTCTAATTTATTTAAAGAAGTGAAATGATTGTTTATTA

Coding sequence (CDS)

ATGGGTTCCCCTTGTTCCCATGATCAGTGGCTAGAGTTGAGTTTAGGATTGAAAGGCACAAAGAAGAAATTACAAGAAAAAGAAGAAGAGGAAACAAAGTTGCACTGCCAAAACACTTCTCATGAGCATTTGGATGAGGAAATTAATGAGGATTGTTTGGAGTTGAGGCTTCAAATAGGGCCTAACAAAAATTACAATATGGGATTAATGGATTTAATGTATCATCAAAACAAGAAGAAGCAAAAAGGGGCATTTCATAGTGATTGTTATTATAATTATTATTCTTCACTCACCAACTTTCGCCTTTCTTCTTCATCACCATCTCCCAACTCTGCTGGTTTCTGGTTCTCACTACTCTCTTCACCCAACAGGAAGGGAGGAGCAGCACTGCCTCAGATACCCAAACCCTACATTAGAGTCAAGGATGAGAAGATGACAGTGTTGATGGTGAAGAAGTACCTGCTCACAAAGTTGGGTCTCTCCAATCAAGCTCAGGTTGAATTATGGTGCATGGGAGAGAGGCTGTTGCAGACTCAGTCACTAAAGCAAGTGAGAGATGGAATTTGGGTGCCTAAGTTGGTGGAATTCCTAAATTCAAATTCATCATTATCAACTTCTTCAATATTTCACCATTGCTCTCATCTTATGTCTTTGCATTATGGAACAACATCCTTCTTCTAA

Protein sequence

MGSPCSHDQWLELSLGLKGTKKKLQEKEEEETKLHCQNTSHEHLDEEINEDCLELRLQIGPNKNYNMGLMDLMYHQNKKKQKGAFHSDCYYNYYSSLTNFRLSSSSPSPNSAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELWCMGERLLQTQSLKQVRDGIWVPKLVEFLNSNSSLSTSSIFHHCSHLMSLHYGTTSFF

Homology

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BLAST of CcUC02G017330.1 vs. NCBI nr
Match: KAG6571319.1 (Protein LAX PANICLE 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.1 bits (645), Expect = 2.3e-63
Identity = 149/227 (65.64%), Postives = 170/227 (74.89%), Query Frame = 0


Query: 1   MGSPCSHDQWLELSLGLKGTKKKLQEKEEEETKLHCQNTSHEHLDEEINEDCLELRLQIG 60
           MGSP S  +WLELSLGL+GTKKK +E ++EE ++        +LDEE     L LRLQIG
Sbjct: 1   MGSPGS-KEWLELSLGLRGTKKKQEEAKKEEDEM--------NLDEEGEGSSLSLRLQIG 60

Query: 61  PNK-NYNMGLMDLMYHQNKKKQKGAFHSDCYYNYYSSLTNFRLSSSSPSPNSAGFWFSLL 120
           P   + NMG+M  M  QN   QK AFHS    N+     +F   SS P PN AG WFSL 
Sbjct: 61  PKYFDTNMGIMGFMSTQN--NQKWAFHSHSLTNF----PHFHGLSSPPPPNPAGLWFSLR 120

Query: 121 SSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELWCMGERLLQTQ 180
           SSPNRKGGA LPQIPK YIRVKDEKMTVLMVKKYLLTKLGLS+QA+VELWCMGERLLQTQ
Sbjct: 121 SSPNRKGGAPLPQIPKAYIRVKDEKMTVLMVKKYLLTKLGLSHQAEVELWCMGERLLQTQ 180

Query: 181 SLKQVRDGIWVPKLVEFLNSNSSLSTSSIFHHCSHLMSLHYGTTSFF 227
           SLKQVRDG+W+PKLVEF+NSNSSLSTS++F   ++LM LHYGTT  F
Sbjct: 181 SLKQVRDGVWLPKLVEFVNSNSSLSTSTMF-QTTYLMCLHYGTTCLF 211

[Close]

BLAST of CcUC02G017330.1 vs. NCBI nr
Match: XP_022931988.1 (protein LAX PANICLE 2-like [Cucurbita moschata])

HSP 1 Score: 250.0 bits (637), Expect = 2.0e-62
Identity = 148/227 (65.20%), Postives = 169/227 (74.45%), Query Frame = 0


Query: 1   MGSPCSHDQWLELSLGLKGTKKKLQEKEEEETKLHCQNTSHEHLDEEINEDCLELRLQIG 60
           MGSP S  +WLELSLGL+GTKKK +E ++EE ++        +L EE     L LRLQIG
Sbjct: 1   MGSPGS-KEWLELSLGLRGTKKKQEEAKKEEDEM--------NLGEEGEGSSLSLRLQIG 60

Query: 61  PN-KNYNMGLMDLMYHQNKKKQKGAFHSDCYYNYYSSLTNFRLSSSSPSPNSAGFWFSLL 120
           P   + NMG+M  M  QN   QK AFHS    N+     +F   SS P PN AG WFSL 
Sbjct: 61  PKCFDTNMGIMGFMSTQN--NQKWAFHSHSLTNF----PHFHGLSSPPPPNPAGLWFSLR 120

Query: 121 SSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELWCMGERLLQTQ 180
           SSPNRKGGA LPQIPK YIRVKDEKMTVLMVKKYLLTKLGLS+QA+VELWCMGERLLQTQ
Sbjct: 121 SSPNRKGGAPLPQIPKAYIRVKDEKMTVLMVKKYLLTKLGLSHQAEVELWCMGERLLQTQ 180

Query: 181 SLKQVRDGIWVPKLVEFLNSNSSLSTSSIFHHCSHLMSLHYGTTSFF 227
           SLKQVRDG+W+PKLVEF+NSNSSLSTS++F   ++LM LHYGTT  F
Sbjct: 181 SLKQVRDGVWLPKLVEFVNSNSSLSTSTMF-QTTYLMCLHYGTTCLF 211

[Close]

BLAST of CcUC02G017330.1 vs. NCBI nr
Match: KAE8652308.1 (hypothetical protein Csa_022227 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-34
Identity = 108/181 (59.67%), Postives = 124/181 (68.51%), Query Frame = 0


Query: 1   MGSPCSHDQWLELSLGLKGT-KKKLQEKEEEETK---------LHCQNTSHEHLDEEINE 60
           MGS  S  +WLELSLGL  T K++LQ++E+E+ K         + C  TSHE   E +N 
Sbjct: 1   MGS-SSTQEWLELSLGLGSTGKEQLQKQEKEDEKRSRLYQEKLVICGTTSHEE-SEYVN- 60

Query: 61  DCLELRLQIGPN--KNY-NMGLMDLM-YHQNKKKQKGAFHSDCYYNYYSSLTNFRLSSSS 120
             L+LRLQIGPN   NY NMG+ D M  HQ+KKK    FHSD     YSS+         
Sbjct: 61  --LDLRLQIGPNNKSNYCNMGIRDFMLQHQSKKKH---FHSD-----YSSIIT------- 120

Query: 121 PSPNSAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQV 168
              NSAG WFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQA++
Sbjct: 121 ---NSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEL 158

[Close]

BLAST of CcUC02G017330.1 vs. NCBI nr
Match: XP_015879616.1 (uncharacterized protein LOC107415739 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-29
Identity = 76/138 (55.07%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 92  NYYSSLTNFRLSSSSPSPNSAGFWFSLLSSPN--RKGGAALPQIPKPYIRVKDEKMTVLM 151
           +Y SS +N ++S+    PNS G WF+L +S N  R+GG  LPQ+PK YIRVKDE +TV M
Sbjct: 191 DYSSSSSNIKIST---RPNS-GLWFTLSASTNREREGGGGLPQVPKAYIRVKDENVTVSM 250

Query: 152 VKKYLLTKLGLSNQAQVELWCMGERLLQTQSLKQVRDGIWVPKLVEFLNSNSSLS--TSS 211
           VKKYL+ KLGLSN+A+++++CMG++L+ TQSLKQVRDG+W+P+LVE +NS +     T++
Sbjct: 251 VKKYLVRKLGLSNEAEIDVYCMGQKLVHTQSLKQVRDGVWLPRLVESVNSAAGADERTTA 310

Query: 212 IFHH--CSHLMSLHYGTT 224
             HH    HL+SLHYG T
Sbjct: 311 DCHHILTYHLLSLHYGRT 324

[Close]

BLAST of CcUC02G017330.1 vs. NCBI nr
Match: XP_015879615.1 (uncharacterized protein LOC107415739 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-29
Identity = 76/139 (54.68%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 92  NYYSSLTNFRLSSSSPSPNSAGFWFSLLSSPNRK---GGAALPQIPKPYIRVKDEKMTVL 151
           +Y SS +N ++S+    PNS G WF+L +S NR+   GG  LPQ+PK YIRVKDE +TV 
Sbjct: 191 DYSSSSSNIKIST---RPNS-GLWFTLSASTNRREREGGGGLPQVPKAYIRVKDENVTVS 250

Query: 152 MVKKYLLTKLGLSNQAQVELWCMGERLLQTQSLKQVRDGIWVPKLVEFLNSNSSLS--TS 211
           MVKKYL+ KLGLSN+A+++++CMG++L+ TQSLKQVRDG+W+P+LVE +NS +     T+
Sbjct: 251 MVKKYLVRKLGLSNEAEIDVYCMGQKLVHTQSLKQVRDGVWLPRLVESVNSAAGADERTT 310

Query: 212 SIFHH--CSHLMSLHYGTT 224
           +  HH    HL+SLHYG T
Sbjct: 311 ADCHHILTYHLLSLHYGRT 325

[Close]

BLAST of CcUC02G017330.1 vs. ExPASy Swiss-Prot
Match: G3XKQ9 (Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX2 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-15
Identity = 43/111 (38.74%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 111 SAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELWC 170
           +AG WF L ++P +     LPQIP+ Y+R+KD ++TV ++ KYL+ KLGL ++++VE+ C
Sbjct: 284 AAGVWFVLQAAPLQGREPFLPQIPRSYLRIKDGRVTVRLLTKYLVNKLGLEDESEVEITC 343

Query: 171 MGERLLQTQSLKQVRDGIWVPKLVEFLNSNSSLSTSSIFHHCSHLMSLHYG 222
            G +LL   +L+ VRD IW  +  + ++ +++    +  HH  H+M L YG
Sbjct: 344 RGRQLLPILTLQHVRDSIWCRR--DAVSPSAAPDIPTADHH-QHIMVLQYG 391

[Close]

BLAST of CcUC02G017330.1 vs. ExPASy Swiss-Prot
Match: Q94AY3 (E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.6e-12
Identity = 35/93 (37.63%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 115 WFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELWCMGER 174
           WFSL++S N++G A+LPQIP  Y+R++D  + V  ++KYL+ KL L ++ +VE+ CMGE 
Sbjct: 311 WFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSEDEVEITCMGEP 370

Query: 175 LLQTQSLKQVRDGIWVPKLVEFLNSNSSLSTSS 208
           ++ T  L  + D +W+    +     +S+ +S+
Sbjct: 371 VIPTLQLHSLVD-LWLETTSKHQRVAASIGSSA 402

[Close]

BLAST of CcUC02G017330.1 vs. ExPASy Swiss-Prot
Match: Q9M9Y4 (E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-11
Identity = 34/90 (37.78%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 103 SSSSPSPNSAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSN 162
           SS+     +   WFSL++S +++GG +LPQIP  ++R++D   TV  ++KYL+ KL L +
Sbjct: 300 SSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLES 359

Query: 163 QAQVELWCMGERLLQTQSLKQVRDGIWVPK 193
           + ++E+ CMGE ++ T +L  + D +W+ K
Sbjct: 360 ENEIEIKCMGEAVIPTLTLYNLVD-LWLQK 388

[Close]

BLAST of CcUC02G017330.1 vs. ExPASy Swiss-Prot
Match: Q9LS86 (Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana OX=3702 GN=At3g23060 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.5e-07
Identity = 40/115 (34.78%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 110 NSAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELW 169
           N+   WFSL  S  +     LP I    IRVKD  MTV  +KKYL+ KLGL ++ QVE+W
Sbjct: 361 NNNPVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEIW 420

Query: 170 CMGERLLQTQSLKQVRDGIWVPKLVEFLNSNSSLSTSSIFHHCSHLMSLHYGTTS 225
              E +  + +L  + D  W  +        S++  SS       +M L+Y   S
Sbjct: 421 LRDEPVCSSLTLHNLVD--WWVQTTPLPERQSAMVGSSA---AEFIMDLYYSFKS 470

[Close]

BLAST of CcUC02G017330.1 vs. ExPASy TrEMBL
Match: A0A6J1F0B3 (protein LAX PANICLE 2-like OS=Cucurbita moschata OX=3662 GN=LOC111438321 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 9.5e-63
Identity = 148/227 (65.20%), Postives = 169/227 (74.45%), Query Frame = 0


Query: 1   MGSPCSHDQWLELSLGLKGTKKKLQEKEEEETKLHCQNTSHEHLDEEINEDCLELRLQIG 60
           MGSP S  +WLELSLGL+GTKKK +E ++EE ++        +L EE     L LRLQIG
Sbjct: 1   MGSPGS-KEWLELSLGLRGTKKKQEEAKKEEDEM--------NLGEEGEGSSLSLRLQIG 60

Query: 61  PN-KNYNMGLMDLMYHQNKKKQKGAFHSDCYYNYYSSLTNFRLSSSSPSPNSAGFWFSLL 120
           P   + NMG+M  M  QN   QK AFHS    N+     +F   SS P PN AG WFSL 
Sbjct: 61  PKCFDTNMGIMGFMSTQN--NQKWAFHSHSLTNF----PHFHGLSSPPPPNPAGLWFSLR 120

Query: 121 SSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELWCMGERLLQTQ 180
           SSPNRKGGA LPQIPK YIRVKDEKMTVLMVKKYLLTKLGLS+QA+VELWCMGERLLQTQ
Sbjct: 121 SSPNRKGGAPLPQIPKAYIRVKDEKMTVLMVKKYLLTKLGLSHQAEVELWCMGERLLQTQ 180

Query: 181 SLKQVRDGIWVPKLVEFLNSNSSLSTSSIFHHCSHLMSLHYGTTSFF 227
           SLKQVRDG+W+PKLVEF+NSNSSLSTS++F   ++LM LHYGTT  F
Sbjct: 181 SLKQVRDGVWLPKLVEFVNSNSSLSTSTMF-QTTYLMCLHYGTTCLF 211

[Close]

BLAST of CcUC02G017330.1 vs. ExPASy TrEMBL
Match: A0A6P3ZLP7 (uncharacterized protein LOC107415739 isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107415739 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 76/138 (55.07%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 92  NYYSSLTNFRLSSSSPSPNSAGFWFSLLSSPN--RKGGAALPQIPKPYIRVKDEKMTVLM 151
           +Y SS +N ++S+    PNS G WF+L +S N  R+GG  LPQ+PK YIRVKDE +TV M
Sbjct: 191 DYSSSSSNIKIST---RPNS-GLWFTLSASTNREREGGGGLPQVPKAYIRVKDENVTVSM 250

Query: 152 VKKYLLTKLGLSNQAQVELWCMGERLLQTQSLKQVRDGIWVPKLVEFLNSNSSLS--TSS 211
           VKKYL+ KLGLSN+A+++++CMG++L+ TQSLKQVRDG+W+P+LVE +NS +     T++
Sbjct: 251 VKKYLVRKLGLSNEAEIDVYCMGQKLVHTQSLKQVRDGVWLPRLVESVNSAAGADERTTA 310

Query: 212 IFHH--CSHLMSLHYGTT 224
             HH    HL+SLHYG T
Sbjct: 311 DCHHILTYHLLSLHYGRT 324

[Close]

BLAST of CcUC02G017330.1 vs. ExPASy TrEMBL
Match: A0A6P3ZIQ0 (uncharacterized protein LOC107415739 isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107415739 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 76/139 (54.68%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 92  NYYSSLTNFRLSSSSPSPNSAGFWFSLLSSPNRK---GGAALPQIPKPYIRVKDEKMTVL 151
           +Y SS +N ++S+    PNS G WF+L +S NR+   GG  LPQ+PK YIRVKDE +TV 
Sbjct: 191 DYSSSSSNIKIST---RPNS-GLWFTLSASTNRREREGGGGLPQVPKAYIRVKDENVTVS 250

Query: 152 MVKKYLLTKLGLSNQAQVELWCMGERLLQTQSLKQVRDGIWVPKLVEFLNSNSSLS--TS 211
           MVKKYL+ KLGLSN+A+++++CMG++L+ TQSLKQVRDG+W+P+LVE +NS +     T+
Sbjct: 251 MVKKYLVRKLGLSNEAEIDVYCMGQKLVHTQSLKQVRDGVWLPRLVESVNSAAGADERTT 310

Query: 212 SIFHH--CSHLMSLHYGTT 224
           +  HH    HL+SLHYG T
Sbjct: 311 ADCHHILTYHLLSLHYGRT 325

[Close]

BLAST of CcUC02G017330.1 vs. ExPASy TrEMBL
Match: A0A2I4DPI0 (uncharacterized protein LOC108982202 OS=Juglans regia OX=51240 GN=LOC108982202 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27
Identity = 70/115 (60.87%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 112 AGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELWCM 171
           +G WFSL SS NR  G ALPQIPK YIRVKDE +TV MVKKYL+TKLGLSN+A++++ CM
Sbjct: 171 SGLWFSLRSSTNR-DGEALPQIPKAYIRVKDENVTVFMVKKYLVTKLGLSNEAEIDISCM 230

Query: 172 GERLLQTQSLKQVRDGIWVPKLVEFLNSN-SSLSTSSIFHHCSHLMSLHYGTTSF 226
           G+ LL TQ+LK+VRD +WVP+L+E +NS   SL   S+     HLMSLHY   S+
Sbjct: 231 GQNLLHTQTLKEVRDAVWVPRLLESVNSTILSLEDYSLDMSSKHLMSLHYERRSY 284

[Close]

BLAST of CcUC02G017330.1 vs. ExPASy TrEMBL
Match: A0A6P6TID9 (protein LAX PANICLE 2-like OS=Coffea arabica OX=13443 GN=LOC113701705 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 71/118 (60.17%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 104 SSSPSPNSAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQ 163
           S  P+P   G WF+LLS+ NR+ G  LPQIPKPYIRVKD  +TV MVK YL+ KLGLSN+
Sbjct: 70  SQRPNP---GLWFTLLSTSNRE-GKVLPQIPKPYIRVKDSNVTVFMVKTYLVRKLGLSNE 129

Query: 164 AQVELWCMGERLLQTQSLKQVRDGIWVPKLVEFLNSNSSLSTSSIFHHCSHLMSLHYG 222
           A+VE+ CMG+ LL +Q+LK VRD IW+ KLVEFLNSN ++   + F H   LMSL YG
Sbjct: 130 AEVEISCMGQNLLDSQTLKHVRDCIWLSKLVEFLNSNPTIVKDTKFLH--RLMSLEYG 181

[Close]

BLAST of CcUC02G017330.1 vs. TAIR 10
Match: AT5G13250.1 (RING finger protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-15
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 107 PSPNSAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQA-Q 166
           P    +G WF L +S N+     LPQIPK Y+R+KD KMTV ++ KYL+ KL L +++ Q
Sbjct: 269 PRRPHSGIWFLLQASQNQTVEPFLPQIPKSYLRIKDGKMTVRLLMKYLVNKLRLEHESQQ 328

Query: 167 VELWCMGERLLQTQSLKQVRDGIW-VPKLVEFLNSNSSLSTSSIFHHCSHLMSLHYGTT 224
           VE+ C G+ L    +L+ VRD IW   +    L+ N +L  +S      HLM LHYG T
Sbjct: 329 VEIRCRGQELEPVLTLQHVRDAIWRGSRDTSSLSQNITLLPNS--STSDHLMVLHYGRT 385

[Close]

BLAST of CcUC02G017330.1 vs. TAIR 10
Match: AT2G30580.1 (DREB2A-interacting protein 2 )

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-13
Identity = 35/93 (37.63%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 115 WFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELWCMGER 174
           WFSL++S N++G A+LPQIP  Y+R++D  + V  ++KYL+ KL L ++ +VE+ CMGE 
Sbjct: 311 WFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSEDEVEITCMGEP 370

Query: 175 LLQTQSLKQVRDGIWVPKLVEFLNSNSSLSTSS 208
           ++ T  L  + D +W+    +     +S+ +S+
Sbjct: 371 VIPTLQLHSLVD-LWLETTSKHQRVAASIGSSA 402

[Close]

BLAST of CcUC02G017330.1 vs. TAIR 10
Match: AT1G06770.1 (DREB2A-interacting protein 1 )

HSP 1 Score: 71.6 bits (174), Expect = 8.9e-13
Identity = 34/90 (37.78%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 103 SSSSPSPNSAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSN 162
           SS+     +   WFSL++S +++GG +LPQIP  ++R++D   TV  ++KYL+ KL L +
Sbjct: 300 SSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLES 359

Query: 163 QAQVELWCMGERLLQTQSLKQVRDGIWVPK 193
           + ++E+ CMGE ++ T +L  + D +W+ K
Sbjct: 360 ENEIEIKCMGEAVIPTLTLYNLVD-LWLQK 388

[Close]

BLAST of CcUC02G017330.1 vs. TAIR 10
Match: AT1G06770.2 (DREB2A-interacting protein 1 )

HSP 1 Score: 71.6 bits (174), Expect = 8.9e-13
Identity = 34/90 (37.78%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 103 SSSSPSPNSAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSN 162
           SS+     +   WFSL++S +++GG +LPQIP  ++R++D   TV  ++KYL+ KL L +
Sbjct: 186 SSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLES 245

Query: 163 QAQVELWCMGERLLQTQSLKQVRDGIWVPK 193
           + ++E+ CMGE ++ T +L  + D +W+ K
Sbjct: 246 ENEIEIKCMGEAVIPTLTLYNLVD-LWLQK 274

[Close]

BLAST of CcUC02G017330.1 vs. TAIR 10
Match: AT3G23060.1 (RING/U-box superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-08
Identity = 40/115 (34.78%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 110 NSAGFWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAQVELW 169
           N+   WFSL  S  +     LP I    IRVKD  MTV  +KKYL+ KLGL ++ QVE+W
Sbjct: 361 NNNPVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEIW 420

Query: 170 CMGERLLQTQSLKQVRDGIWVPKLVEFLNSNSSLSTSSIFHHCSHLMSLHYGTTS 225
              E +  + +L  + D  W  +        S++  SS       +M L+Y   S
Sbjct: 421 LRDEPVCSSLTLHNLVD--WWVQTTPLPERQSAMVGSSA---AEFIMDLYYSFKS 470

The following BLAST results are available for this feature:

BLAST of CcUC02G017330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571319.1	2.3e-63	65.64	Protein LAX PANICLE 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022931988.1	2.0e-62	65.20	protein LAX PANICLE 2-like [Cucurbita moschata]	[more]
KAE8652308.1	5.1e-34	59.67	hypothetical protein Csa_022227 [Cucumis sativus]	[more]
XP_015879616.1	3.7e-29	55.07	uncharacterized protein LOC107415739 isoform X2 [Ziziphus jujuba]	[more]
XP_015879615.1	3.7e-29	54.68	uncharacterized protein LOC107415739 isoform X1 [Ziziphus jujuba]	[more]

BLAST of CcUC02G017330.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
G3XKQ9	7.1e-15	38.74	Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX2 PE=1 SV=1	[more]
Q94AY3	9.6e-12	37.63	E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 ...	[more]
Q9M9Y4	1.3e-11	37.78	E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 ...	[more]
Q9LS86	5.5e-07	34.78	Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana OX=3702 GN=At...	[more]

BLAST of CcUC02G017330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0B3	9.5e-63	65.20	protein LAX PANICLE 2-like OS=Cucurbita moschata OX=3662 GN=LOC111438321 PE=4 SV...	[more]
A0A6P3ZLP7	1.8e-29	55.07	uncharacterized protein LOC107415739 isoform X2 OS=Ziziphus jujuba OX=326968 GN=...	[more]
A0A6P3ZIQ0	1.8e-29	54.68	uncharacterized protein LOC107415739 isoform X1 OS=Ziziphus jujuba OX=326968 GN=...	[more]
A0A2I4DPI0	2.2e-27	60.87	uncharacterized protein LOC108982202 OS=Juglans regia OX=51240 GN=LOC108982202 P...	[more]
A0A6P6TID9	1.9e-26	60.17	protein LAX PANICLE 2-like OS=Coffea arabica OX=13443 GN=LOC113701705 PE=4 SV=1	[more]

BLAST of CcUC02G017330.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13250.1	1.5e-15	42.86	RING finger protein	[more]
AT2G30580.1	6.8e-13	37.63	DREB2A-interacting protein 2	[more]
AT1G06770.1	8.9e-13	37.78	DREB2A-interacting protein 1	[more]
AT1G06770.2	8.9e-13	37.78	DREB2A-interacting protein 1	[more]
AT3G23060.1	3.9e-08	34.78	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..37
None	No IPR available	GENE3D	3.10.20.90		coord: 6..197 e-value: 7.9E-9 score: 37.2
None	No IPR available	PANTHER	PTHR47290:SF6	SUBFAMILY NOT NAMED	coord: 111..223
IPR044171	Protein LAX PANICLE 2-like	PANTHER	PTHR47290	RING FINGER PROTEIN	coord: 111..223

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G017330	CcUC02G017330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G017330.1-exon	CcUC02G017330.1-exon-CicolChr02:220140..220554	exon
CcUC02G017330.1-exon	CcUC02G017330.1-exon-CicolChr02:221218..221290	exon
CcUC02G017330.1-exon	CcUC02G017330.1-exon-CicolChr02:222014..222064	exon
CcUC02G017330.1-exon	CcUC02G017330.1-exon-CicolChr02:222495..222937	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G017330.1-three_prime_utr	CcUC02G017330.1-three_prime_utr-CicolChr02:220140..220368	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G017330.1-cds	CcUC02G017330.1-cds-CicolChr02:220369..220554	CDS
CcUC02G017330.1-cds	CcUC02G017330.1-cds-CicolChr02:221218..221290	CDS
CcUC02G017330.1-cds	CcUC02G017330.1-cds-CicolChr02:222014..222064	CDS
CcUC02G017330.1-cds	CcUC02G017330.1-cds-CicolChr02:222495..222865	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G017330.1-five_prime_utr	CcUC02G017330.1-five_prime_utr-CicolChr02:222866..222937	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G017330.1	CcUC02G017330.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development