Carg28244-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28244-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transmembrane protein
Location	Carg_Chr04: 15648230 .. 15649171 (-)
Sequence length	942
RNA-Seq Expression	Carg28244-RA
Synteny	Carg28244-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTCCTGTGCTGAACATGATTACTGGATTCGGAAGAGAACTGGGTTCGATTCCAGATCCCAATTTTCTATCTCGAATTTTCACTTCCTTTTCCATATTTCAACAGTTTTGGAAATGGGGTGCTCTGTTTATTGCTCTGTTGGCCACATTTAGCGGCATAATCAATCGACTCAAGACCTCTGTTATCGTCATTCGCCGGAGAACTCGAACCACTCCCATTTCGGAACCTCTCTCCTCATCTCTCCACGGCGGAGAGAACGGTAGTTTAATTTCAGAGAATTTCAGATCTCTGCCTCTTTCACGCTCGGAATCGGAAGATGAGAACGAGGGAGACCAGGACCGGGAGCCGAACGATAGGTTGGATTTTCTTGTCAAAGGGTCGGTTCGATTTTCCGGTGAATTTGACGACCGCCGTTTTTCTGGTCTCCGGCGGCGACACGGAAGCAGAGGAGGCAATGGAGATTCTTTCTCGTGGCCCTGTTTTGTGTCGGACAAGAGCGTGGTGAAGCAATGGGGCGATATGAAATTGAAATGCGAGTTTGAGGAGTTGAGTGGGAGTGTAATTTTGGTGTACGATGAGAATGAAGAGGCGGAGATCTGCTCCATTTTCAGCGGGGGAGATCCGCTGAAAGCGGCGGCGTTATCGGCGGCGAAAATGGTTGTGGCTGCCAGAGAGAGTGGTTTGGGGAACATGTCGCTGAAGATTTGGGACACGCGCGACCGGAGTCAGACACCGGTGATTGCGGCGGAGTGGAATTCTCCAAAGATCGTCGACGTCTATTCCGAGGAGGTTGAAAAGGTCGATATTGGAGATAAGGGGGCCGCCGGAATGATGGTTGGCGATGTTAGAAAATTTTGGTCGGCGTCGGAGAAGTGGCGGAAGGGCGGCGGTGAGGGCTGGTGGGAATCGGCAGCGACGCCATTTATTGTCTTATGA

mRNA sequence

ATGGAAGTTCCTGTGCTGAACATGATTACTGGATTCGGAAGAGAACTGGGTTCGATTCCAGATCCCAATTTTCTATCTCGAATTTTCACTTCCTTTTCCATATTTCAACAGTTTTGGAAATGGGGTGCTCTGTTTATTGCTCTGTTGGCCACATTTAGCGGCATAATCAATCGACTCAAGACCTCTGTTATCGTCATTCGCCGGAGAACTCGAACCACTCCCATTTCGGAACCTCTCTCCTCATCTCTCCACGGCGGAGAGAACGGTAGTTTAATTTCAGAGAATTTCAGATCTCTGCCTCTTTCACGCTCGGAATCGGAAGATGAGAACGAGGGAGACCAGGACCGGGAGCCGAACGATAGGTTGGATTTTCTTGTCAAAGGGTCGGTTCGATTTTCCGGTGAATTTGACGACCGCCGTTTTTCTGGTCTCCGGCGGCGACACGGAAGCAGAGGAGGCAATGGAGATTCTTTCTCGTGGCCCTGTTTTGTGTCGGACAAGAGCGTGGTGAAGCAATGGGGCGATATGAAATTGAAATGCGAGTTTGAGGAGTTGAGTGGGAGTGTAATTTTGGTGTACGATGAGAATGAAGAGGCGGAGATCTGCTCCATTTTCAGCGGGGGAGATCCGCTGAAAGCGGCGGCGTTATCGGCGGCGAAAATGGTTGTGGCTGCCAGAGAGAGTGGTTTGGGGAACATGTCGCTGAAGATTTGGGACACGCGCGACCGGAGTCAGACACCGGTGATTGCGGCGGAGTGGAATTCTCCAAAGATCGTCGACGTCTATTCCGAGGAGGTTGAAAAGGTCGATATTGGAGATAAGGGGGCCGCCGGAATGATGGTTGGCGATGTTAGAAAATTTTGGTCGGCGTCGGAGAAGTGGCGGAAGGGCGGCGGTGAGGGCTGGTGGGAATCGGCAGCGACGCCATTTATTGTCTTATGA

Coding sequence (CDS)

ATGGAAGTTCCTGTGCTGAACATGATTACTGGATTCGGAAGAGAACTGGGTTCGATTCCAGATCCCAATTTTCTATCTCGAATTTTCACTTCCTTTTCCATATTTCAACAGTTTTGGAAATGGGGTGCTCTGTTTATTGCTCTGTTGGCCACATTTAGCGGCATAATCAATCGACTCAAGACCTCTGTTATCGTCATTCGCCGGAGAACTCGAACCACTCCCATTTCGGAACCTCTCTCCTCATCTCTCCACGGCGGAGAGAACGGTAGTTTAATTTCAGAGAATTTCAGATCTCTGCCTCTTTCACGCTCGGAATCGGAAGATGAGAACGAGGGAGACCAGGACCGGGAGCCGAACGATAGGTTGGATTTTCTTGTCAAAGGGTCGGTTCGATTTTCCGGTGAATTTGACGACCGCCGTTTTTCTGGTCTCCGGCGGCGACACGGAAGCAGAGGAGGCAATGGAGATTCTTTCTCGTGGCCCTGTTTTGTGTCGGACAAGAGCGTGGTGAAGCAATGGGGCGATATGAAATTGAAATGCGAGTTTGAGGAGTTGAGTGGGAGTGTAATTTTGGTGTACGATGAGAATGAAGAGGCGGAGATCTGCTCCATTTTCAGCGGGGGAGATCCGCTGAAAGCGGCGGCGTTATCGGCGGCGAAAATGGTTGTGGCTGCCAGAGAGAGTGGTTTGGGGAACATGTCGCTGAAGATTTGGGACACGCGCGACCGGAGTCAGACACCGGTGATTGCGGCGGAGTGGAATTCTCCAAAGATCGTCGACGTCTATTCCGAGGAGGTTGAAAAGGTCGATATTGGAGATAAGGGGGCCGCCGGAATGATGGTTGGCGATGTTAGAAAATTTTGGTCGGCGTCGGAGAAGTGGCGGAAGGGCGGCGGTGAGGGCTGGTGGGAATCGGCAGCGACGCCATTTATTGTCTTATGA

Protein sequence

MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLKTSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPNDRLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKCEFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDTRDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGEGWWESAATPFIVL

Homology

[Close]

BLAST of Carg28244-RA vs. NCBI nr
Match: KAG7032516.1 (hypothetical protein SDJN02_06565, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 625.9 bits (1613), Expect = 1.8e-175
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK
Sbjct: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
           TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND
Sbjct: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
           RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC
Sbjct: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT
Sbjct: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240

Query: 241 RDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300
           RDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE
Sbjct: 241 RDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300

Query: 301 GWWESAATPFIVL 314
           GWWESAATPFIVL
Sbjct: 301 GWWESAATPFIVL 313

[Close]

BLAST of Carg28244-RA vs. NCBI nr
Match: KAG6601806.1 (hypothetical protein SDJN03_07039, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 620.2 bits (1598), Expect = 1.0e-173
Identity = 310/313 (99.04%), Postives = 311/313 (99.36%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK
Sbjct: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
           TSVIVIRRRTRTTPISEPLSSSLHGGEN SLISENFRSLPLSRSESEDENEGDQDREPND
Sbjct: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENSSLISENFRSLPLSRSESEDENEGDQDREPND 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
           RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGD+KLKC
Sbjct: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDVKLKC 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT
Sbjct: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240

Query: 241 RDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300
           RDRSQTPVIAAEWNSPKIVDVY EEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE
Sbjct: 241 RDRSQTPVIAAEWNSPKIVDVYPEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300

Query: 301 GWWESAATPFIVL 314
           GWWESAATPFIVL
Sbjct: 301 GWWESAATPFIVL 313

[Close]

BLAST of Carg28244-RA vs. NCBI nr
Match: XP_022971770.1 (uncharacterized protein LOC111470454 [Cucurbita maxima])

HSP 1 Score: 611.7 bits (1576), Expect = 3.6e-171
Identity = 304/313 (97.12%), Postives = 309/313 (98.72%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINR+K
Sbjct: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRIK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
           TSVIVI RRTRTTPISEPLSSSLHGGENG LISENFRS PLS SESEDENEGDQDREP+D
Sbjct: 61  TSVIVIHRRTRTTPISEPLSSSLHGGENGGLISENFRSPPLSSSESEDENEGDQDREPDD 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
           RLDFLVKGSVRFSGEFDDRRF+GLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGD+KLKC
Sbjct: 121 RLDFLVKGSVRFSGEFDDRRFTGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDVKLKC 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT
Sbjct: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240

Query: 241 RDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300
           RDRSQTPVIAAEWNSPKIVDVYSEE+EKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE
Sbjct: 241 RDRSQTPVIAAEWNSPKIVDVYSEEIEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300

Query: 301 GWWESAATPFIVL 314
           GWWESAATPFIVL
Sbjct: 301 GWWESAATPFIVL 313

[Close]

BLAST of Carg28244-RA vs. NCBI nr
Match: XP_022958745.1 (uncharacterized protein LOC111459929 [Cucurbita moschata])

HSP 1 Score: 603.6 bits (1555), Expect = 9.7e-169
Identity = 303/313 (96.81%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK
Sbjct: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
           TSVIVIRRRTRTTPISEPLSSSLHGGENGSLIS+NFRSLP S SESEDENEGDQDREP+D
Sbjct: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISKNFRSLPRSSSESEDENEGDQDREPDD 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
           RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGD+KLKC
Sbjct: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDVKLKC 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGSVILVYDENEEAEICSIFSGGDPLK    SAAKMVVAARESGLGNMSLKIWDT
Sbjct: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLK----SAAKMVVAARESGLGNMSLKIWDT 240

Query: 241 RDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300
           RDR QTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE
Sbjct: 241 RDRGQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300

Query: 301 GWWESAATPFIVL 314
           GWWESAATPFIVL
Sbjct: 301 GWWESAATPFIVL 309

[Close]

BLAST of Carg28244-RA vs. NCBI nr
Match: XP_023539690.1 (uncharacterized protein LOC111800270 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 595.5 bits (1534), Expect = 2.6e-166
Identity = 299/313 (95.53%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK
Sbjct: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
           TSVIVIRRRTRTTPISEPLSSSLHG EN  LISENFRSLPLS SESEDENEGD+DREP+D
Sbjct: 61  TSVIVIRRRTRTTPISEPLSSSLHGRENVGLISENFRSLPLSSSESEDENEGDRDREPDD 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
           RLDFLVKGSVR SGEFDDR FSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQW D+KLKC
Sbjct: 121 RLDFLVKGSVRLSGEFDDRSFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWSDVKLKC 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGSVILVYDENEEAEICSIF GGDPLKAAA+SAAKMVVAARESGLGNMSLKIWDT
Sbjct: 181 EFEELSGSVILVYDENEEAEICSIFRGGDPLKAAAVSAAKMVVAARESGLGNMSLKIWDT 240

Query: 241 RDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300
           RDRSQTPVIAAEWNSP IVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE
Sbjct: 241 RDRSQTPVIAAEWNSPMIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300

Query: 301 GWWESAATPFIVL 314
            WWESAATPFIVL
Sbjct: 301 DWWESAATPFIVL 313

[Close]

BLAST of Carg28244-RA vs. ExPASy TrEMBL
Match: A0A6J1I6N0 (uncharacterized protein LOC111470454 OS=Cucurbita maxima OX=3661 GN=LOC111470454 PE=4 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 1.7e-171
Identity = 304/313 (97.12%), Postives = 309/313 (98.72%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINR+K
Sbjct: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRIK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
           TSVIVI RRTRTTPISEPLSSSLHGGENG LISENFRS PLS SESEDENEGDQDREP+D
Sbjct: 61  TSVIVIHRRTRTTPISEPLSSSLHGGENGGLISENFRSPPLSSSESEDENEGDQDREPDD 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
           RLDFLVKGSVRFSGEFDDRRF+GLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGD+KLKC
Sbjct: 121 RLDFLVKGSVRFSGEFDDRRFTGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDVKLKC 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT
Sbjct: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240

Query: 241 RDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300
           RDRSQTPVIAAEWNSPKIVDVYSEE+EKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE
Sbjct: 241 RDRSQTPVIAAEWNSPKIVDVYSEEIEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300

Query: 301 GWWESAATPFIVL 314
           GWWESAATPFIVL
Sbjct: 301 GWWESAATPFIVL 313

[Close]

BLAST of Carg28244-RA vs. ExPASy TrEMBL
Match: A0A6J1H4C3 (uncharacterized protein LOC111459929 OS=Cucurbita moschata OX=3662 GN=LOC111459929 PE=4 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 4.7e-169
Identity = 303/313 (96.81%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK
Sbjct: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
           TSVIVIRRRTRTTPISEPLSSSLHGGENGSLIS+NFRSLP S SESEDENEGDQDREP+D
Sbjct: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISKNFRSLPRSSSESEDENEGDQDREPDD 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
           RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGD+KLKC
Sbjct: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDVKLKC 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGSVILVYDENEEAEICSIFSGGDPLK    SAAKMVVAARESGLGNMSLKIWDT
Sbjct: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLK----SAAKMVVAARESGLGNMSLKIWDT 240

Query: 241 RDRSQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300
           RDR QTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE
Sbjct: 241 RDRGQTPVIAAEWNSPKIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGGGE 300

Query: 301 GWWESAATPFIVL 314
           GWWESAATPFIVL
Sbjct: 301 GWWESAATPFIVL 309

[Close]

BLAST of Carg28244-RA vs. ExPASy TrEMBL
Match: A0A0A0KDT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G028940 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 5.0e-94
Identity = 193/306 (63.07%), Postives = 226/306 (73.86%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLN IT  G  LGS+P+P+FLSRIFTS    Q FWKW AL IA LATF GIINR+K
Sbjct: 1   MEVPVLNRITELGPNLGSLPNPSFLSRIFTSVFPSQHFWKWAALIIAFLATFPGIINRVK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
             +IV RRRT+TT ISEPL  SLH G++  L+S+N +S  LS SESEDENE  +DRE N+
Sbjct: 61  VFIIVCRRRTKTTSISEPLYRSLHFGDSRGLVSKNLKSPLLSSSESEDENE--RDREHNN 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
             DF VKGS  FSGEFD    S  RRR  + GGNGD FSWPCF  ++SVV+QWGD+KLKC
Sbjct: 121 DSDFRVKGSSLFSGEFDGGCRSRHRRRPCNGGGNGDLFSWPCFGLERSVVRQWGDVKLKC 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGS+I +YD NEEAEICSI SGG  LKAAA+S  +MVVAA E    N+SLK+WDT
Sbjct: 181 EFEELSGSMISLYDVNEEAEICSILSGGGSLKAAAVSPRRMVVAANEGVSANVSLKLWDT 240

Query: 241 RDRSQTPVIAAEWNSP--KIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGG 300
           R RS+TPV+  EW+SP   IVDVY E+V  + + D  AAG+M+GDVR+  S  EK   GG
Sbjct: 241 RGRSRTPVVGMEWDSPSGNIVDVYYEDVGNLYVRDNEAAGIMIGDVRRASSGWEKLTAGG 300

Query: 301 GEGWWE 305
           GEG WE
Sbjct: 301 GEGLWE 304

[Close]

BLAST of Carg28244-RA vs. ExPASy TrEMBL
Match: A0A5A7T3F5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5066G00090 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.4e-93
Identity = 192/305 (62.95%), Postives = 225/305 (73.77%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLN IT  G  LGS+P+PNFLSRIFTSF   Q FWKWGAL IALLATF+GIINR+K
Sbjct: 1   MEVPVLNRITELGAHLGSLPNPNFLSRIFTSFFPSQHFWKWGALIIALLATFTGIINRVK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
             +I+ RRRT+TT ISEPL  SLH  ++G L+S+N +S PLS SESEDENE  + RE N+
Sbjct: 61  VFIIICRRRTKTTSISEPLYRSLHCRDSGGLVSKNLKSPPLSSSESEDENE--RGRERNN 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
             +F VK S RFS E D    S LRRRH + G NGD F WPCF  D+SVV+QWGD+    
Sbjct: 121 DSNFRVKVSSRFSCELDGGCHSRLRRRHCNGGSNGDLFPWPCFGLDRSVVRQWGDVISNS 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGS+I +YD+NEEAEICSIF+ G  LKA A+S  +MVVAA E    N+SLK+WDT
Sbjct: 181 EFEELSGSMISLYDDNEEAEICSIFNEGGSLKAVAVSPRRMVVAASEGVSANVSLKLWDT 240

Query: 241 RDRSQTPVIAAEWNSP--KIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGG 300
           R RS+TPV+A EW+SP   IVDVY E+VE V + D GAAG+MVGDVRK  S SEK   G 
Sbjct: 241 RGRSRTPVVAVEWDSPSRNIVDVYYEDVENVYLRDNGAAGIMVGDVRKASSGSEKLTAGD 300

Query: 301 GEGWW 304
           G G W
Sbjct: 301 GGGLW 303

[Close]

BLAST of Carg28244-RA vs. ExPASy TrEMBL
Match: A0A1S3BCP7 (uncharacterized protein LOC103488596 OS=Cucumis melo OX=3656 GN=LOC103488596 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.4e-93
Identity = 192/305 (62.95%), Postives = 225/305 (73.77%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQQFWKWGALFIALLATFSGIINRLK 60
           MEVPVLN IT  G  LGS+P+PNFLSRIFTSF   Q FWKWGAL IALLATF+GIINR+K
Sbjct: 1   MEVPVLNRITELGAHLGSLPNPNFLSRIFTSFFPSQHFWKWGALIIALLATFTGIINRVK 60

Query: 61  TSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQDREPND 120
             +I+ RRRT+TT ISEPL  SLH  ++G L+S+N +S PLS SESEDENE  + RE N+
Sbjct: 61  VFIIICRRRTKTTSISEPLYRSLHCRDSGGLVSKNLKSPPLSSSESEDENE--RGRERNN 120

Query: 121 RLDFLVKGSVRFSGEFDDRRFSGLRRRHGSRGGNGDSFSWPCFVSDKSVVKQWGDMKLKC 180
             +F VK S RFS E D    S LRRRH + G NGD F WPCF  D+SVV+QWGD+    
Sbjct: 121 DSNFRVKVSSRFSCELDGGCHSRLRRRHCNGGSNGDLFPWPCFGLDRSVVRQWGDVISNS 180

Query: 181 EFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVVAARESGLGNMSLKIWDT 240
           EFEELSGS+I +YD+NEEAEICSIF+ G  LKA A+S  +MVVAA E    N+SLK+WDT
Sbjct: 181 EFEELSGSMISLYDDNEEAEICSIFNEGGSLKAVAVSPRRMVVAASEGVSANVSLKLWDT 240

Query: 241 RDRSQTPVIAAEWNSP--KIVDVYSEEVEKVDIGDKGAAGMMVGDVRKFWSASEKWRKGG 300
           R RS+TPV+A EW+SP   IVDVY E+VE V + D GAAG+MVGDVRK  S SEK   G 
Sbjct: 241 RGRSRTPVVAVEWDSPSRNIVDVYYEDVENVYLRDNGAAGIMVGDVRKASSGSEKLTAGD 300

Query: 301 GEGWW 304
           G G W
Sbjct: 301 GGGLW 303

[Close]

BLAST of Carg28244-RA vs. TAIR 10
Match: AT1G68440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-21
Identity = 95/327 (29.05%), Postives = 145/327 (44.34%), Query Frame = 0


Query: 1   MEVPVLNMITGFGRELGSIPDPNFLSRIFTSFSIFQ-----QFWKWGALFIALLATFSGI 60
           MEVPV+N I  F   + SI DP+FLSR      I +      FWKWGAL IA LA F+  
Sbjct: 1   MEVPVINRIRDFEVGINSINDPSFLSRSVAVSGIGKLHQAYGFWKWGALIIAFLAYFTNF 60

Query: 61  INRLKTSVIVIRRRTRTTPISEPLSSSLHGGENGSLISENFRSLPLSRSESEDENEGDQD 120
           +++L +  +V+R R     +S P     +  ++    S    S   S  E ++E+E D +
Sbjct: 61  VSKLNS--LVVRLRKIDVSVSSPTLFDDYDSDSDVSCS----STVSSDDEKDEEDEADDE 120

Query: 121 REPNDRL--------DFLVKGSVRFSGEFDDRRFSGLRRRHGSR--GGNGDSFSWPCF-- 180
            E  D +         F V+GS  +  + DD+  +G     G R  G  GD FSWP    
Sbjct: 121 DEDVDSIFNRRRVNGGFRVRGSDYYDDD-DDQGDNGNCTWMGRRYSGSFGDLFSWPDLGG 180

Query: 181 VSDKSVVKQWGDMKLKCEFEELSGSVILVYDENEEAEICSIFSGGDPLKAAALSAAKMVV 240
           +    VVK W  + +               D ++   + + F     LK    +++    
Sbjct: 181 IGSSGVVKLWDHLDI---------------DGDDHENVVATF-----LKNYNSTSSPFFW 240

Query: 241 AARESGLGNMSLKIWDTRDRSQTPVIAAEWNSP-----KIVDVYSEEVEKVDIGDKGAAG 300
           AA + G+  + +K  D R   + P + AEW  P      I+ V +  VEKV + D  +  
Sbjct: 241 AAEKKGVDAVKVKACDPRAGFRMPALLAEWRQPGRLLGNIIGVDTGGVEKVYVRDDVSGE 300

Query: 301 MMVGDVRKFWSASEKWRKGGGEGWWES 306
           + VGD+RKF        +   E WW++
Sbjct: 301 IAVGDLRKFNGVLTDLTECEAETWWDA 300

The following BLAST results are available for this feature:

BLAST of Carg28244-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032516.1	1.8e-175	100.00	hypothetical protein SDJN02_06565, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601806.1	1.0e-173	99.04	hypothetical protein SDJN03_07039, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022971770.1	3.6e-171	97.12	uncharacterized protein LOC111470454 [Cucurbita maxima]	[more]
XP_022958745.1	9.7e-169	96.81	uncharacterized protein LOC111459929 [Cucurbita moschata]	[more]
XP_023539690.1	2.6e-166	95.53	uncharacterized protein LOC111800270 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg28244-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg28244-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6N0	1.7e-171	97.12	uncharacterized protein LOC111470454 OS=Cucurbita maxima OX=3661 GN=LOC111470454...	[more]
A0A6J1H4C3	4.7e-169	96.81	uncharacterized protein LOC111459929 OS=Cucurbita moschata OX=3662 GN=LOC1114599...	[more]
A0A0A0KDT7	5.0e-94	63.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G028940 PE=4 SV=1	[more]
A0A5A7T3F5	1.4e-93	62.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BCP7	1.4e-93	62.95	uncharacterized protein LOC103488596 OS=Cucumis melo OX=3656 GN=LOC103488596 PE=...	[more]

BLAST of Carg28244-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68440.1	3.3e-21	29.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..120
None	No IPR available	PANTHER	PTHR36715:SF1	BNAANNG41370D PROTEIN	coord: 1..306
None	No IPR available	PANTHER	PTHR36715	BNAANNG41370D PROTEIN	coord: 1..306

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg28244	Carg28244	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28244-RA:1	Carg28244-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28244-RA:cds	Carg28244-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg28244-RA	Carg28244-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane