Carg26519-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26519-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	leucine-rich repeat extensin-like protein 3 isoform X4
Location	Carg_Chr13: 4959981 .. 4961022 (+)
Sequence length	878
RNA-Seq Expression	Carg26519-RA
Synteny	Carg26519-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCATCCATGGCGGACGCCAAGGTCATTTCTCTCTGTTTTTGGTTTGGTTTTTGAGTTTCTTGTCTCTGTTTTGCTGATTCTGAGTGACTTTAATTGTTTATGCAGAAGACTGTGGTTATGATGCTTAAAGTGGATTTGCAGTGTGATCGATGCTACAAGAAAGTGAAGAAAGTTCTCTGCAAATTTCCTCGTCAGTTCTTTCTCCATTTCTACTGTTCTTCTGTTCTTTACTCTGTTTTTCCAAATTGATTTTGATTCTTTGAACGCCAGAAATTCGAGACCAGATTTATGATGAGAAACAGAATCTTGTGATTATCAAAGTGGTTTGTTGTAATCCTGAGAAGCTTAGAGATAAAATTTGTTGCAAGGGCTGTGGTGTTATTAAGAGCATTGAAATCAAGCCCGCCGATCCTCCTCCGCCCAAAAAGCCTGATCCTCCTCCGCCCAAAAAAGCCGATCCTCCTCCGCCGGCTAAGCCTGACCCTCCTCCCCCTAAAAAAGCCGACCCACCACCGCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCACCACCGAAAAAGGCCGACCCACCGCCTCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCGCCTCCAAAGGCCGACCCTCCCCCACCCAAAAAGGCCGACCCTCCCCACACCCAAAAAGGCCGACCCACCGCCGCCAAAAAGGCCGACCCACCCCCGGCACCCAAGGCCGACCCACCGCCTCCGAAAAAGGTAGACCCTGTGCCACCGGCTCAACCCGAACCGTTCCCGGTTAACATATGCGTGCCGGTTCCCGGATACCCACCGGCTTACCCGATTGGGATGTGCTGTAGTCAGTGCTATGAAGGGCAGGGTGGGGGCCCATGTTACAGTGGGTTTGGTAGGCCCGGCCCATGTTGCGATGGGTGCGCTTCTGGAAGGCCCATTTACGACAGTTACGGCGGAGGGAGGCCCTGTTATGTTAGCCACTGTGAATACCTCAACGAAGAAAATGCATCCGGGTGCAGTGTTATGTGA

mRNA sequence

ACTCATCCATGGCGGACGCCAAGAAGACTGTGGTTATGATGCTTAAAGTGGATTTGCAGTGTGATCGATGCTACAAGAAAGTGAAGAAAGTTCTCTGCAAATTTCCTCAAATTCGAGACCAGATTTATGATGAGAAACAGAATCTTGTGATTATCAAAGTGGTTTGTTGTAATCCTGAGAAGCTTAGAGATAAAATTTGTTGCAAGGGCTGTGGTGTTATTAAGAGCATTGAAATCAAGCCCGCCGATCCTCCTCCGCCCAAAAAGCCTGATCCTCCTCCGCCCAAAAAAGCCGATCCTCCTCCGCCGGCTAAGCCTGACCCTCCTCCCCCTAAAAAAGCCGACCCACCACCGCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCACCACCGAAAAAGGCCGACCCACCGCCTCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCGCCTCCAAAGGCCGACCCTCCCCCACCCAAAAAGGCCGACCCTCCCCACACCCAAAAAGGCCGACCCACCGCCGCCAAAAAGGCCGACCCACCCCCGGCACCCAAGGCCGACCCACCGCCTCCGAAAAAGGTAGACCCTGTGCCACCGGCTCAACCCGAACCGTTCCCGGTTAACATATGCGTGCCGGTTCCCGGATACCCACCGGCTTACCCGATTGGGATGTGCTGTAGTCAGTGCTATGAAGGGCAGGGTGGGGGCCCATGTTACAGTGGGTTTGGTAGGCCCGGCCCATGTTGCGATGGGTGCGCTTCTGGAAGGCCCATTTACGACAGTTACGGCGGAGGGAGGCCCTGTTATGTTAGCCACTGTGAATACCTCAACGAAGAAAATGCATCCGGGTGCAGTGTTATGTGA

Coding sequence (CDS)

ATGGCGGACGCCAAGAAGACTGTGGTTATGATGCTTAAAGTGGATTTGCAGTGTGATCGATGCTACAAGAAAGTGAAGAAAGTTCTCTGCAAATTTCCTCAAATTCGAGACCAGATTTATGATGAGAAACAGAATCTTGTGATTATCAAAGTGGTTTGTTGTAATCCTGAGAAGCTTAGAGATAAAATTTGTTGCAAGGGCTGTGGTGTTATTAAGAGCATTGAAATCAAGCCCGCCGATCCTCCTCCGCCCAAAAAGCCTGATCCTCCTCCGCCCAAAAAAGCCGATCCTCCTCCGCCGGCTAAGCCTGACCCTCCTCCCCCTAAAAAAGCCGACCCACCACCGCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCACCACCGAAAAAGGCCGACCCACCGCCTCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCGCCTCCAAAGGCCGACCCTCCCCCACCCAAAAAGGCCGACCCTCCCCACACCCAAAAAGGCCGACCCACCGCCGCCAAAAAGGCCGACCCACCCCCGGCACCCAAGGCCGACCCACCGCCTCCGAAAAAGGTAGACCCTGTGCCACCGGCTCAACCCGAACCGTTCCCGGTTAACATATGCGTGCCGGTTCCCGGATACCCACCGGCTTACCCGATTGGGATGTGCTGTAGTCAGTGCTATGAAGGGCAGGGTGGGGGCCCATGTTACAGTGGGTTTGGTAGGCCCGGCCCATGTTGCGATGGGTGCGCTTCTGGAAGGCCCATTTACGACAGTTACGGCGGAGGGAGGCCCTGTTATGTTAGCCACTGTGAATACCTCAACGAAGAAAATGCATCCGGGTGCAGTGTTATGTGA

Protein sequence

MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGRPTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM

Homology

[Close]

BLAST of Carg26519-RA vs. NCBI nr
Match: KAG7019369.1 (hypothetical protein SDJN02_18329 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 542.7 bits (1397), Expect = 1.9e-150
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGRPTAAKKA 180
           PPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGRPTAAKKA
Sbjct: 121 PPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGRPTAAKKA 180

Query: 181 DPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPC 240
           DPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPC
Sbjct: 181 DPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPC 240

Query: 241 YSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 290
           YSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM
Sbjct: 241 YSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 289

[Close]

BLAST of Carg26519-RA vs. NCBI nr
Match: XP_022927592.1 (leucine-rich repeat extensin-like protein 3 isoform X7 [Cucurbita moschata])

HSP 1 Score: 516.9 bits (1330), Expect = 1.1e-142
Identity = 281/296 (94.93%), Postives = 282/296 (95.27%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPK-------KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGR 180
           PPPK       KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPP  +K  
Sbjct: 121 PPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKKAD 180

Query: 181 PTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE 240
           P   KKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE
Sbjct: 181 PPPPKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE 240

Query: 241 GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 290
           GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM
Sbjct: 241 GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 296

[Close]

BLAST of Carg26519-RA vs. NCBI nr
Match: XP_022927590.1 (leucine-rich repeat extensin-like protein 3 isoform X5 [Cucurbita moschata])

HSP 1 Score: 513.8 bits (1322), Expect = 9.3e-142
Identity = 281/304 (92.43%), Postives = 282/304 (92.76%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKP---------------DP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKP               DP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKAD 180
           PPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKAD
Sbjct: 121 PPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKAD 180

Query: 181 PPHTQKGRPTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIG 240
           PP  +K  P   KKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIG
Sbjct: 181 PPPPKKADPPPPKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIG 240

Query: 241 MCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASG 290
           MCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASG
Sbjct: 241 MCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASG 300

[Close]

BLAST of Carg26519-RA vs. NCBI nr
Match: XP_022927593.1 (leucine-rich repeat extensin-like protein 3 isoform X8 [Cucurbita moschata])

HSP 1 Score: 512.3 bits (1318), Expect = 2.7e-141
Identity = 281/296 (94.93%), Postives = 281/296 (94.93%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPK-------KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGR 180
           PPPK       KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPP   K  
Sbjct: 121 PPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPP-PPKAD 180

Query: 181 PTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE 240
           P   KKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE
Sbjct: 181 PPPPKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE 240

Query: 241 GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 290
           GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM
Sbjct: 241 GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 295

[Close]

BLAST of Carg26519-RA vs. NCBI nr
Match: XP_022927589.1 (leucine-rich repeat extensin-like protein 3 isoform X4 [Cucurbita moschata])

HSP 1 Score: 511.1 bits (1315), Expect = 6.1e-141
Identity = 281/311 (90.35%), Postives = 282/311 (90.68%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPK----------------------KADPPPPKKADPPPPKADPPPPKKADPPPPKADP 180
           PPPK                      KADPPPPKKADPPPPKADPPPPKKADPPPPKADP
Sbjct: 121 PPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADP 180

Query: 181 PPPKKADPPHTQKGRPTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGY 240
           PPPKKADPP  +K  P   KKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGY
Sbjct: 181 PPPKKADPPPPKKADPPPPKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGY 240

Query: 241 PPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYL 290
           PPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYL
Sbjct: 241 PPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYL 300

[Close]

BLAST of Carg26519-RA vs. ExPASy Swiss-Prot
Match: P23093 (Circumsporozoite protein OS=Plasmodium berghei (strain Anka) OX=5823 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.5e-04
Identity = 71/135 (52.59%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 78  PADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKA-DPPPPKKADPPPPKKADP 137
           P DPPPP   DPPPP   DPPPP   DPPPP   DPPPP A DPPPP   DP PP   DP
Sbjct: 98  PNDPPPPNPNDPPPPNPNDPPPPNPNDPPPPNPNDPPPPNANDPPPPNANDPAPPNANDP 157

Query: 138 PPPKA-DPPPPKKADPPPPKA-DPPPPKKADPPHTQKGRPTAAKKADP-PPAPKADPPPP 197
            PP A DP PP   DPPPP A DPPPP   DP       P      DP PP    +P P 
Sbjct: 158 APPNANDPAPPNANDPPPPNANDPPPPNPNDPAPPNANDPPPPNPNDPAPPQGNNNPQPQ 217

Query: 198 KKVDPVPPAQPEPFP 209
            +  P P  QP+P P
Sbjct: 218 PRPQPQPQPQPQPQP 232

[Close]

BLAST of Carg26519-RA vs. ExPASy TrEMBL
Match: A0A6J1EHL7 (leucine-rich repeat extensin-like protein 3 isoform X7 OS=Cucurbita moschata OX=3662 GN=LOC111434373 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 5.3e-143
Identity = 281/296 (94.93%), Postives = 282/296 (95.27%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPK-------KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGR 180
           PPPK       KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPP  +K  
Sbjct: 121 PPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKKAD 180

Query: 181 PTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE 240
           P   KKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE
Sbjct: 181 PPPPKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE 240

Query: 241 GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 290
           GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM
Sbjct: 241 GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 296

[Close]

BLAST of Carg26519-RA vs. ExPASy TrEMBL
Match: A0A6J1EPE4 (leucine-rich repeat extensin-like protein 3 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111434373 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 4.5e-142
Identity = 281/304 (92.43%), Postives = 282/304 (92.76%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKP---------------DP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKP               DP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKAD 180
           PPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKAD
Sbjct: 121 PPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKAD 180

Query: 181 PPHTQKGRPTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIG 240
           PP  +K  P   KKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIG
Sbjct: 181 PPPPKKADPPPPKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIG 240

Query: 241 MCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASG 290
           MCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASG
Sbjct: 241 MCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASG 300

[Close]

BLAST of Carg26519-RA vs. ExPASy TrEMBL
Match: A0A6J1ELF4 (leucine-rich repeat extensin-like protein 3 isoform X8 OS=Cucurbita moschata OX=3662 GN=LOC111434373 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.3e-141
Identity = 281/296 (94.93%), Postives = 281/296 (94.93%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPK-------KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGR 180
           PPPK       KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPP   K  
Sbjct: 121 PPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPP-PPKAD 180

Query: 181 PTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE 240
           P   KKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE
Sbjct: 181 PPPPKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYE 240

Query: 241 GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 290
           GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM
Sbjct: 241 GQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM 295

[Close]

BLAST of Carg26519-RA vs. ExPASy TrEMBL
Match: A0A6J1EIF2 (leucine-rich repeat extensin-like protein 3 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111434373 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.9e-141
Identity = 281/311 (90.35%), Postives = 282/311 (90.68%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPK----------------------KADPPPPKKADPPPPKADPPPPKKADPPPPKADP 180
           PPPK                      KADPPPPKKADPPPPKADPPPPKKADPPPPKADP
Sbjct: 121 PPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADP 180

Query: 181 PPPKKADPPHTQKGRPTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGY 240
           PPPKKADPP  +K  P   KKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGY
Sbjct: 181 PPPKKADPPPPKKADPPPPKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGY 240

Query: 241 PPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYL 290
           PPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYL
Sbjct: 241 PPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYL 300

[Close]

BLAST of Carg26519-RA vs. ExPASy TrEMBL
Match: A0A6J1EI38 (leucine-rich repeat extensin-like protein 3 isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111434373 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 6.5e-141
Identity = 281/303 (92.74%), Postives = 282/303 (93.07%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120
           DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADP 120

Query: 121 PPPK-------KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPK-------KADP 180
           PPPK       KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPK       KADP
Sbjct: 121 PPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPPPKADP 180

Query: 181 PHTQKGRPTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGM 240
           P  +K  P   KKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGM
Sbjct: 181 PPPKKADPPPPKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGM 240

Query: 241 CCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGC 290
           CCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGC
Sbjct: 241 CCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGC 300

[Close]

BLAST of Carg26519-RA vs. TAIR 10
Match: AT4G16380.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 5.1e-29
Identity = 122/293 (41.64%), Postives = 154/293 (52.56%), Query Frame = 0


Query: 5   KKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDKIC 64
           +K  +M LKVDL C +CYKKVKKVLCKFPQIRDQ++DEK N+VIIKVVCC+PE++ DK+C
Sbjct: 7   EKVTMMKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDKLC 66

Query: 65  CKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADPPPPK 124
            KG G IK+IEI     PP  +P  PP K  D  P A   P  P+K   P    +P  PK
Sbjct: 67  SKGGGSIKTIEIVEPPKPPQPQPQQPPQKPKDAQPKAPEKPKEPEKPKQPEKLKEPEKPK 126

Query: 125 KADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGRPTAAKKADPPP 184
           +  P  PK+    P K   P P  A  P P A P P                A    P P
Sbjct: 127 Q--PEKPKE----PEKTKQPAPAPAPAPAPAAKPAP----------------APAPAPAP 186

Query: 185 APKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGF 244
           APK   PPP+ +  +P  QP                     MCC   Y+G  GGP ++G+
Sbjct: 187 APKQPGPPPQAIPMMPQGQP--------------------AMCCGPYYDGY-GGPAFNGY 246

Query: 245 GRPGPCCDGCASGRPIYDSYGGG--------RPCYVSHCEYLNEENASGCSVM 290
           G P    +    GRP+Y+S+GGG        R C+V+ C+Y +EEN   CS+M
Sbjct: 247 GMPPQPYE--CYGRPVYESWGGGCPPPPPAYRQCHVTRCDYFSEENPQSCSIM 254

[Close]

BLAST of Carg26519-RA vs. TAIR 10
Match: AT1G51090.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 3.4e-17
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 4   AKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDKI 63
           A+K V+M LKVDL C +CYKKVKK + KFPQI D+++DEK N +IIKVVC +PE+L +K+
Sbjct: 2   AEKVVMMKLKVDLNCSKCYKKVKKAIRKFPQITDELFDEKSNTIIIKVVCYDPERLMNKL 61

Query: 64  CCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPP 116
           C KG G IKSI I   +PP P +P P PP+K   P PA      P    P P
Sbjct: 62  CYKGDGSIKSIVI--LEPPKPPQPQPQPPQKPTAPAPAPAQAQAPALVRPAP 111

[Close]

BLAST of Carg26519-RA vs. TAIR 10
Match: AT4G16380.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 8.5e-16
Identity = 100/264 (37.88%), Postives = 130/264 (49.24%), Query Frame = 0


Query: 34  QIRDQIYDEKQNLVIIKVVCCNPEKLRDKICCKGCGVIKSIEIKPADPPPPKKPDPPPPK 93
           +IRDQ++DEK N+VIIKVVCC+PE++ DK+C KG G IK+IEI     PP  +P  PP K
Sbjct: 15  EIRDQLFDEKSNIVIIKVVCCSPERIMDKLCSKGGGSIKTIEIVEPPKPPQPQPQQPPQK 74

Query: 94  KADPPPPAKPDPPPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKADPPPPKKADPPP 153
             D  P A   P  P+K   P    +P  PK+  P  PK+    P K   P P  A  P 
Sbjct: 75  PKDAQPKAPEKPKEPEKPKQPEKLKEPEKPKQ--PEKPKE----PEKTKQPAPAPAPAPA 134

Query: 154 PKADPPPPKKADPPHTQKGRPTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICV 213
           P A P P                A    P PAPK   PPP+ +  +P  QP         
Sbjct: 135 PAAKPAP----------------APAPAPAPAPKQPGPPPQAIPMMPQGQP--------- 194

Query: 214 PVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGG------ 273
                       MCC   Y+G  GGP ++G+G P    +    GRP+Y+S+GGG      
Sbjct: 195 -----------AMCCGPYYDGY-GGPAFNGYGMPPQPYE--CYGRPVYESWGGGCPPPPP 233

Query: 274 --RPCYVSHCEYLNEENASGCSVM 290
             R C+V+ C+Y +EEN   CS+M
Sbjct: 255 AYRQCHVTRCDYFSEENPQSCSIM 233

[Close]

BLAST of Carg26519-RA vs. TAIR 10
Match: AT1G44191.1 (ECA1 gametogenesis related family protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06
Identity = 72/136 (52.94%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 77  KPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPP-PKADPPPPKKADPPPPKKAD 136
           KP+ PP   K  PPPPK + PPP  K  PPPPK + PPP PK  PPPPK + PPP  K  
Sbjct: 105 KPSPPPRTPKKSPPPPKPSSPPPIPKKSPPPPKPSSPPPTPKKSPPPPKPSSPPPSPKKS 164

Query: 137 PPPPKADPPPPKKADPPP-PKADPP-PPKKADPPHTQKGRPTAAKKADPPPAPKADPPPP 196
           PPPPK  P PPK + PPP PK  PP PPK + PP + K  P   K +  PP P   PP P
Sbjct: 165 PPPPKPSPSPPKPSTPPPTPKKSPPSPPKPSSPPPSPKKSPPPPKPSPSPPKPSTPPPTP 224

Query: 197 KKVDPVP-PAQPEPFP 209
           KK  P P P+QP P P
Sbjct: 225 KKSPPPPKPSQPPPKP 240

The following BLAST results are available for this feature:

BLAST of Carg26519-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019369.1	1.9e-150	100.00	hypothetical protein SDJN02_18329 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022927592.1	1.1e-142	94.93	leucine-rich repeat extensin-like protein 3 isoform X7 [Cucurbita moschata]	[more]
XP_022927590.1	9.3e-142	92.43	leucine-rich repeat extensin-like protein 3 isoform X5 [Cucurbita moschata]	[more]
XP_022927593.1	2.7e-141	94.93	leucine-rich repeat extensin-like protein 3 isoform X8 [Cucurbita moschata]	[more]
XP_022927589.1	6.1e-141	90.35	leucine-rich repeat extensin-like protein 3 isoform X4 [Cucurbita moschata]	[more]

BLAST of Carg26519-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23093	9.5e-04	52.59	Circumsporozoite protein OS=Plasmodium berghei (strain Anka) OX=5823 PE=3 SV=1	[more]

BLAST of Carg26519-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHL7	5.3e-143	94.93	leucine-rich repeat extensin-like protein 3 isoform X7 OS=Cucurbita moschata OX=...	[more]
A0A6J1EPE4	4.5e-142	92.43	leucine-rich repeat extensin-like protein 3 isoform X5 OS=Cucurbita moschata OX=...	[more]
A0A6J1ELF4	1.3e-141	94.93	leucine-rich repeat extensin-like protein 3 isoform X8 OS=Cucurbita moschata OX=...	[more]
A0A6J1EIF2	2.9e-141	90.35	leucine-rich repeat extensin-like protein 3 isoform X4 OS=Cucurbita moschata OX=...	[more]
A0A6J1EI38	6.5e-141	92.74	leucine-rich repeat extensin-like protein 3 isoform X6 OS=Cucurbita moschata OX=...	[more]

BLAST of Carg26519-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16380.1	5.1e-29	41.64	Heavy metal transport/detoxification superfamily protein	[more]
AT1G51090.1	3.4e-17	53.57	Heavy metal transport/detoxification superfamily protein	[more]
AT4G16380.2	8.5e-16	37.88	Heavy metal transport/detoxification superfamily protein	[more]
AT1G44191.1	2.1e-06	52.94	ECA1 gametogenesis related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..202
None	No IPR available	PANTHER	PTHR47488:SF16	HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN	coord: 161..289
None	No IPR available	PANTHER	PTHR47488:SF16	HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN	coord: 4..163
IPR044169	Protein PYRICULARIA ORYZAE RESISTANCE 21	PANTHER	PTHR47488	HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN	coord: 161..289 coord: 4..163
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 9..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26519	Carg26519	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26519-RA:1	Carg26519-RA:1	exon
Carg26519-RA:2	Carg26519-RA:2	exon
Carg26519-RA:3	Carg26519-RA:3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26519-RA:five_prime_utr	Carg26519-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26519-RA:cds	Carg26519-RA:cds	CDS
Carg26519-RA:cds	Carg26519-RA:cds_2	CDS
Carg26519-RA:cds	Carg26519-RA:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26519-RA	Carg26519-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900150	regulation of defense response to fungus
molecular_function	GO:0046872	metal ion binding