Carg26327-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26327-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Vacuolar ATPase assembly integral membrane protein VMA21 homolog
Location	Carg_Chr03: 10160240 .. 10162663 (-)
Sequence length	997
RNA-Seq Expression	Carg26327-RA
Synteny	Carg26327-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGACGCCTCCTCTTCCCTTCTTCCACTTCCAAATCTCCTAACCTCGACACCATCTCCATTTCTCTCGTCAGAACCTCAAATCGCTCACCTTTCTCGCGACTGCACTTGAAGAAGCCGCAATTCCGAACTTCGAAGCCCTAATTCGTGCTCCCAACCTGCCATCTAGTAAGGGTCACTCAATGTTTGTGATTTGCATTTACGAATTATGTACACGGGATTTCTAATCCAGACTGCGTATAAGTGGATGATTCGTCTATCGGATTTGTGTTCTTTTTTCTAGTTTTTTACTTCTTTGCTCTCTCTGTGGTTTTTCTCCTTTCTGTTTTATTTCACCTGTAAACGAAATCACTGGTCTTCAAATTTGTGAACGCGTTACTGCTTTTCCATTTTCATTCGCGCATGTATCCGCTTGCTGCTGGCATACAGGATAATAAAGTTTATGAAATCTAATTTGTGAGGATTTTTGTTTTATGGGTTTAAATTGCGAATAGAAACGTAAATTTCTTTCTAAAATAGCATATGTGATTTTATGTTACTTTGTTTCAAAGTATGTGAATTTACTAGTCTATTTTGCGGCTTGCCCTTAAAATCATATATCTAACAACTTCCTCTTTCCAAACATTGTTGACAAATTGAAGGCACCAATGGCAGGCGTCATTACGAAGTTCTTCATTGCATCACTGTTTATGTGGATAACTCCCATCATATTGTTGTATGGTTTTAACCACAATTTGATTCCTGGTAAGATTTATTAGCATAAATACTAGCATCTGTTGCTTATGCAAGATTTTTAGCGGTCATCTTTTTAGTATGTGCAGACTTGTGTTTAATTATGAATCTGAGATACTAGTCTTGTGTTGGACTCATTACCCAATTCAAGAGGAACCAAGAGCTCTCTCTAGGCAGTATACTATTTTCTCAAAAGCACCCTCACACACGCTGCCTACCACACTATTAAAAGCCCACACCAGATTACACTAACTTTAAGAATTGGACCTCCCATTTATGCCCCTCTTGTTATATTGTGATTAGAGGCCTGACACTAACTTACCTCCTCATTGATATAAAGAACCCAGTCTTTTCTAGCTTTCTTTTTATATTCTGATAATTACCAGTAAGTGCATTTTGGTCTTGTCTGGATGGTGTTACCTAAAGAGCATGGTTTGGTATGCCATCTTTACTGCTTCATGGCTACTGGTCGTCAGACTCAATTATTGATTGATGATGTATACGTTTAGGGAATCTTAAAATTTTAATCGCACGCTCATAATAATCCATTTATCTTCCTGTCTGTAAATTTGTTAGTATAGAAACAACTTTTATGTGAAATGTAAAGTAGTTCTTAGGAACGTGGAAACCTTGAACCCCCTCGTTTTCCTTCCTGAACTAGGTTAGTGTAAACCTCTCTCAATAATGCTTGTCCCTCTTCCTCACTACCTTCTTTACTCATAACTGTTGGTCATTACCAAATCACTCTAACACGACTTCTGATTTGGTTCTTCTAAGATAATGAATTTTGTGTTTAACAAAAGTATTACTTCATATTTGTTTATTATTATCTTTTATTGCCGTTTTGTTCGTTCTTTTAGTTTTGATCTTGTACTTTTTGTTTCTTGTCATTAACAACCTGTCTTCTCATATTATTTTCTTGCATGCGCGTGATTACATTTCTAAGTAAATACTCTTCTGGACCAGGTTCAACACAATTGAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAATGTTGTCATTGCTATTTATATTATCATGGCAATGAAAGAACCCTCTAGTAAACATGAACCGGATCCTGCATTTGTTGCCGAGGCAAAAGCTAGTATAAACCAGTCTCCTGGGAAAGCAGAGGACCCCTCACAGGCCAATAATAAGAAGGAAGAATAGGAAATGAGAGAGGGAGGCTCTGATGAGCTTAACCTTTCCAGGATTTCAGATGATAATGTCTCATGTGTGGTCAGACTGTCTGCTTGTCAATTGAGACTTGGTTTCTTTTCTTTGCTTCTAATGATGTTATACTTGAAGAGGAGATGTAATATTTGTTGGTTGGGGAGAATTAGAATAAATTTTAGATTCTTGTATTTCTGGCTTCATAGTTAGAACTTTATAACATAATCCCGATGGTTTCAATCTCTTCATAGTCCAAGGAAAGACACCATTTAACAAGAAGGACACCTTCGAACATCAGATTTAGAACCTCATCCTTTGGCTACCACCAAGGGTTGGTTTGTAGAACTTTGTAGGGGGTTCCTTCCGGTAGTTGGGACATGCTCTTGCTCTAAAATGTGAAAAACCCTATTTACCCTAATTCATACTTCATAACTGACCAAACCCTCTTGCGATTTAA

mRNA sequence

TTTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGACGCCTCCTCTTCCCTTCTTCCACTTCCAAATCTCCTAACCTCGACACCATCTCCATTTCTCTCGTCAGAACCTCAAATCGCTCACCTTTCTCGCGACTGCACTTGAAGAAGCCGCAATTCCGAACTTCGAAGCCCTAATTCGTGCTCCCAACCTGCCATCTAGCACCAATGGCAGGCGTCATTACGAAGTTCTTCATTGCATCACTGTTTATGTGGATAACTCCCATCATATTGTTGTATGGTTTTAACCACAATTTGATTCCTGGTTCAACACAATTGAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAATGTTGTCATTGCTATTTATATTATCATGGCAATGAAAGAACCCTCTAGTAAACATGAACCGGATCCTGCATTTGTTGCCGAGGCAAAAGCTAGTATAAACCAGTCTCCTGGGAAAGCAGAGGACCCCTCACAGGCCAATAATAAGAAGGAAGAATAGGAAATGAGAGAGGGAGGCTCTGATGAGCTTAACCTTTCCAGGATTTCAGATGATAATGTCTCATGTGTGGTCAGACTGTCTGCTTGTCAATTGAGACTTGGTTTCTTTTCTTTGCTTCTAATGATGTTATACTTGAAGAGGAGATGTAATATTTGTTGGTTGGGGAGAATTAGAATAAATTTTAGATTCTTGTATTTCTGGCTTCATAGTTAGAACTTTATAACATAATCCCGATGGTTTCAATCTCTTCATAGTCCAAGGAAAGACACCATTTAACAAGAAGGACACCTTCGAACATCAGATTTAGAACCTCATCCTTTGGCTACCACCAAGGGTTGGTTTGTAGAACTTTGTAGGGGGTTCCTTCCGGTAGTTGGGACATGCTCTTGCTCTAAAATGTGAAAAACCCTATTTACCCTAATTCATACTTCATAACTGACCAAACCCTCTTGCGATTTAA

Coding sequence (CDS)

ATGGCAGGCGTCATTACGAAGTTCTTCATTGCATCACTGTTTATGTGGATAACTCCCATCATATTGTTGTATGGTTTTAACCACAATTTGATTCCTGGTTCAACACAATTGAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAATGTTGTCATTGCTATTTATATTATCATGGCAATGAAAGAACCCTCTAGTAAACATGAACCGGATCCTGCATTTGTTGCCGAGGCAAAAGCTAGTATAAACCAGTCTCCTGGGAAAGCAGAGGACCCCTCACAGGCCAATAATAAGAAGGAAGAATAG

Protein sequence

MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE

Homology

[Close]

BLAST of Carg26327-RA vs. NCBI nr
Match: XP_022926009.1 (uncharacterized protein LOC111433255 [Cucurbita moschata] >XP_022926010.1 uncharacterized protein LOC111433255 [Cucurbita moschata] >XP_023543189.1 uncharacterized protein LOC111803138 [Cucurbita pepo subsp. pepo] >KAG7034797.1 hypothetical protein SDJN02_04529 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 8.4e-48
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI
Sbjct: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE
Sbjct: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 106

[Close]

BLAST of Carg26327-RA vs. NCBI nr
Match: XP_022977993.1 (uncharacterized protein LOC111478118 [Cucurbita maxima] >XP_022977994.1 uncharacterized protein LOC111478118 [Cucurbita maxima])

HSP 1 Score: 197.2 bits (500), Expect = 7.1e-47
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MAGVITKFFIASLFMWITPIILLYGFNHNLIPGST LNPHSLTLLSGFLAVISVNVVIAI
Sbjct: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTHLNPHSLTLLSGFLAVISVNVVIAI 60

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDPAFVAEAKASINQ+PGKAEDPSQANNKKEE
Sbjct: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQAPGKAEDPSQANNKKEE 106

[Close]

BLAST of Carg26327-RA vs. NCBI nr
Match: XP_038882777.1 (protein SUPPRESSOR OF FRI 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 182.6 bits (462), Expect = 1.8e-42
Identity = 97/106 (91.51%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MA VITKFFIASLFMWITPI LLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI
Sbjct: 107 MASVITKFFIASLFMWITPIALLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 166

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDPAF+ EAKASINQS GK  +PSQA+NKKEE
Sbjct: 167 YIIMAMKEPSSKHEPDPAFLVEAKASINQSNGKLNEPSQAHNKKEE 212

[Close]

BLAST of Carg26327-RA vs. NCBI nr
Match: XP_004134542.1 (uncharacterized protein LOC101206493 [Cucumis sativus] >XP_011658340.1 uncharacterized protein LOC101206493 [Cucumis sativus] >KAE8647778.1 hypothetical protein Csa_003577 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 5.8e-41
Identity = 95/106 (89.62%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MA VI KFFIASLFMWITPI LL+GFNHN IPGSTQLNPHSLTLLSGFLAVISVNVVIAI
Sbjct: 1   MANVIMKFFIASLFMWITPITLLHGFNHNWIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDP F+AEAKASINQS GKA+ PSQA NKKEE
Sbjct: 61  YIIMAMKEPSSKHEPDPTFLAEAKASINQSTGKADGPSQAQNKKEE 106

[Close]

BLAST of Carg26327-RA vs. NCBI nr
Match: KAA0052446.1 (hypothetical protein E6C27_scaffold120G00430 [Cucumis melo var. makuwa] >TYK13376.1 hypothetical protein E5676_scaffold255G0010040 [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 5.8e-41
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MA VITKFFIASLFMWITPI LL+GFNHN IPGST+LNPHSLTLLSGFLAVISVNVVI I
Sbjct: 85  MANVITKFFIASLFMWITPITLLHGFNHNWIPGSTRLNPHSLTLLSGFLAVISVNVVIVI 144

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDPAF+AEAKASINQS GKA+ PS+A+NKKEE
Sbjct: 145 YIIMAMKEPSSKHEPDPAFLAEAKASINQSTGKADGPSEAHNKKEE 190

[Close]

BLAST of Carg26327-RA vs. ExPASy TrEMBL
Match: A0A6J1EJT7 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucurbita moschata OX=3662 GN=LOC111433255 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI
Sbjct: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE
Sbjct: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 106

[Close]

BLAST of Carg26327-RA vs. ExPASy TrEMBL
Match: A0A6J1ISV9 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucurbita maxima OX=3661 GN=LOC111478118 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.4e-47
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MAGVITKFFIASLFMWITPIILLYGFNHNLIPGST LNPHSLTLLSGFLAVISVNVVIAI
Sbjct: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTHLNPHSLTLLSGFLAVISVNVVIAI 60

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDPAFVAEAKASINQ+PGKAEDPSQANNKKEE
Sbjct: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQAPGKAEDPSQANNKKEE 106

[Close]

BLAST of Carg26327-RA vs. ExPASy TrEMBL
Match: A0A1S4DTT6 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis melo OX=3656 GN=LOC103484273 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.8e-41
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MA VITKFFIASLFMWITPI LL+GFNHN IPGST+LNPHSLTLLSGFLAVISVNVVI I
Sbjct: 1   MANVITKFFIASLFMWITPITLLHGFNHNWIPGSTRLNPHSLTLLSGFLAVISVNVVIVI 60

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDPAF+AEAKASINQS GKA+ PS+A+NKKEE
Sbjct: 61  YIIMAMKEPSSKHEPDPAFLAEAKASINQSTGKADGPSEAHNKKEE 106

[Close]

BLAST of Carg26327-RA vs. ExPASy TrEMBL
Match: A0A5A7UE48 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010040 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.8e-41
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MA VITKFFIASLFMWITPI LL+GFNHN IPGST+LNPHSLTLLSGFLAVISVNVVI I
Sbjct: 85  MANVITKFFIASLFMWITPITLLHGFNHNWIPGSTRLNPHSLTLLSGFLAVISVNVVIVI 144

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDPAF+AEAKASINQS GKA+ PS+A+NKKEE
Sbjct: 145 YIIMAMKEPSSKHEPDPAFLAEAKASINQSTGKADGPSEAHNKKEE 190

[Close]

BLAST of Carg26327-RA vs. ExPASy TrEMBL
Match: A0A0A0KPB7 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G526400 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.8e-41
Identity = 95/106 (89.62%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MA VI KFFIASLFMWITPI LL+GFNHN IPGSTQLNPHSLTLLSGFLAVISVNVVIAI
Sbjct: 173 MANVIMKFFIASLFMWITPITLLHGFNHNWIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 232

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YIIMAMKEPSSKHEPDP F+AEAKASINQS GKA+ PSQA NKKEE
Sbjct: 233 YIIMAMKEPSSKHEPDPTFLAEAKASINQSTGKADGPSQAQNKKEE 278

[Close]

BLAST of Carg26327-RA vs. TAIR 10
Match: AT1G05780.1 (Vacuolar ATPase assembly integral membrane protein VMA21-like domain )

HSP 1 Score: 128.6 bits (322), Expect = 2.9e-30
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MAGV+ KF IAS+FMWI P+ +LYGFNHNL+PGST L+PHSL LLSGFLAV+SVN VI  
Sbjct: 1   MAGVMHKFLIASMFMWILPVAILYGFNHNLLPGSTTLSPHSLILLSGFLAVVSVNTVIVF 60

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKEE 107
           YI MAMKEP+ KH+PD AF+AEAK S+N+    A        KK+E
Sbjct: 61  YICMAMKEPADKHKPDAAFLAEAKDSVNKLTKGATSSDDHALKKQE 106

[Close]

BLAST of Carg26327-RA vs. TAIR 10
Match: AT2G31710.1 (Vacuolar ATPase assembly integral membrane protein VMA21-like domain )

HSP 1 Score: 124.4 bits (311), Expect = 5.5e-29
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60
           MAGV+ KF IAS+FMWI PI +LYGFN++L+PGST L+PHSLTLLSGFLAV+SVNVVI  
Sbjct: 1   MAGVMQKFLIASMFMWILPIAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVF 60

Query: 61  YIIMAMKEPSSKHEPDPAFVAEAKASINQSPGKAEDPSQANNKKE 106
           YI +A+KEP+ KH+PD +FVAEAK S+ +      +   A  K+E
Sbjct: 61  YICLALKEPADKHKPDASFVAEAKDSVKKLTSGVTNTDPALKKQE 105

The following BLAST results are available for this feature:

BLAST of Carg26327-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926009.1	8.4e-48	100.00	uncharacterized protein LOC111433255 [Cucurbita moschata] >XP_022926010.1 unchar...	[more]
XP_022977993.1	7.1e-47	98.11	uncharacterized protein LOC111478118 [Cucurbita maxima] >XP_022977994.1 uncharac...	[more]
XP_038882777.1	1.8e-42	91.51	protein SUPPRESSOR OF FRI 4-like isoform X1 [Benincasa hispida]	[more]
XP_004134542.1	5.8e-41	89.62	uncharacterized protein LOC101206493 [Cucumis sativus] >XP_011658340.1 uncharact...	[more]
KAA0052446.1	5.8e-41	88.68	hypothetical protein E6C27_scaffold120G00430 [Cucumis melo var. makuwa] >TYK1337...	[more]

BLAST of Carg26327-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26327-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJT7	4.1e-48	100.00	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucurbita mo...	[more]
A0A6J1ISV9	3.4e-47	98.11	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucurbita ma...	[more]
A0A1S4DTT6	2.8e-41	88.68	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis melo...	[more]
A0A5A7UE48	2.8e-41	88.68	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis melo...	[more]
A0A0A0KPB7	2.8e-41	89.62	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis sati...	[more]

BLAST of Carg26327-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05780.1	2.9e-30	64.15	Vacuolar ATPase assembly integral membrane protein VMA21-like domain	[more]
AT2G31710.1	5.5e-29	61.90	Vacuolar ATPase assembly integral membrane protein VMA21-like domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019013	Vacuolar ATPase assembly integral membrane protein Vma21	PFAM	PF09446	VMA21	coord: 4..66 e-value: 1.2E-20 score: 73.5
IPR019013	Vacuolar ATPase assembly integral membrane protein Vma21	PANTHER	PTHR31792	VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA21	coord: 3..105
IPR019013	Vacuolar ATPase assembly integral membrane protein Vma21	HAMAP	MF_03058	VMA21	coord: 1..87 score: 20.846977
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..106
None	No IPR available	PANTHER	PTHR31792:SF3	VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA21	coord: 3..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26327	Carg26327	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26327-RA:3	Carg26327-RA:3	exon
Carg26327-RA:2	Carg26327-RA:2	exon
Carg26327-RA:1	Carg26327-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26327-RA:three_prime_utr	Carg26327-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26327-RA:cds	Carg26327-RA:cds_2	CDS
Carg26327-RA:cds	Carg26327-RA:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26327-RA:five_prime_utr	Carg26327-RA:five_prime_utr_2	five_prime_UTR
Carg26327-RA:five_prime_utr	Carg26327-RA:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26327-RA	Carg26327-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly
cellular_component	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0012507	ER to Golgi transport vesicle membrane
cellular_component	GO:0016021	integral component of membrane