Carg26323-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26323-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	VQ domain-containing protein
Location	Carg_Chr03: 10170794 .. 10171324 (-)
Sequence length	531
RNA-Seq Expression	Carg26323-RA
Synteny	Carg26323-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCAGCAGCAGCAGCGATCAGTGGAGGGCCCAATTCTACACCCACGGCGGCGCGCCTTCCTCTACCGCTGTCCCACGCGACGCTCCCAATAACAACTCCATTTCCAAGCCCAGACGCCGCTCCAGGGCTTCGCGGAAGGCGCCGACCACGCTGCTCAACGCCAGCACCGCCAATTTCAGGGACTTGGTGCAGCAGTTCACGGGGTTTCATGCCGCCGGCGCCGTCGTGCCTTTCGGCAGCCACAAGGGTCCGGTCAACCTCAGCTTCGGGCAGGCTGGAGATGAGTTCCATAACAACCACCCCTCTGTGATGCTCCCTTTCTCGGATGGGCGCCATTTTCAGCTCCGTGAGACGCCGAGGGAGCACGGGGTCCCCATCCCGCAGGGGAATCGTGGGTTTTCAGGGGCGGCGGCGGAACTCATGGAAATTCAAAATCTGATTGATGAGGATTTGAATTACGATCTGGAGGAATTGGGTATGGAGTTCTGTTCTTCCAGTGGGAATGGGAATGGGTACTTGGCTTGA

mRNA sequence

ATGTCTATCAGCAGCAGCAGCGATCAGTGGAGGGCCCAATTCTACACCCACGGCGGCGCGCCTTCCTCTACCGCTGTCCCACGCGACGCTCCCAATAACAACTCCATTTCCAAGCCCAGACGCCGCTCCAGGGCTTCGCGGAAGGCGCCGACCACGCTGCTCAACGCCAGCACCGCCAATTTCAGGGACTTGGTGCAGCAGTTCACGGGGTTTCATGCCGCCGGCGCCGTCGTGCCTTTCGGCAGCCACAAGGGTCCGGTCAACCTCAGCTTCGGGCAGGCTGGAGATGAGTTCCATAACAACCACCCCTCTGTGATGCTCCCTTTCTCGGATGGGCGCCATTTTCAGCTCCGTGAGACGCCGAGGGAGCACGGGGTCCCCATCCCGCAGGGGAATCGTGGGTTTTCAGGGGCGGCGGCGGAACTCATGGAAATTCAAAATCTGATTGATGAGGATTTGAATTACGATCTGGAGGAATTGGGTATGGAGTTCTGTTCTTCCAGTGGGAATGGGAATGGGTACTTGGCTTGA

Coding sequence (CDS)

ATGTCTATCAGCAGCAGCAGCGATCAGTGGAGGGCCCAATTCTACACCCACGGCGGCGCGCCTTCCTCTACCGCTGTCCCACGCGACGCTCCCAATAACAACTCCATTTCCAAGCCCAGACGCCGCTCCAGGGCTTCGCGGAAGGCGCCGACCACGCTGCTCAACGCCAGCACCGCCAATTTCAGGGACTTGGTGCAGCAGTTCACGGGGTTTCATGCCGCCGGCGCCGTCGTGCCTTTCGGCAGCCACAAGGGTCCGGTCAACCTCAGCTTCGGGCAGGCTGGAGATGAGTTCCATAACAACCACCCCTCTGTGATGCTCCCTTTCTCGGATGGGCGCCATTTTCAGCTCCGTGAGACGCCGAGGGAGCACGGGGTCCCCATCCCGCAGGGGAATCGTGGGTTTTCAGGGGCGGCGGCGGAACTCATGGAAATTCAAAATCTGATTGATGAGGATTTGAATTACGATCTGGAGGAATTGGGTATGGAGTTCTGTTCTTCCAGTGGGAATGGGAATGGGTACTTGGCTTGA

Protein sequence

MSISSSSDQWRAQFYTHGGAPSSTAVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRETPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGNGYLA

Homology

[Close]

BLAST of Carg26323-RA vs. NCBI nr
Match: KAG6581510.1 (hypothetical protein SDJN03_21512, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034801.1 hypothetical protein SDJN02_04533, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MSISSSSDQWRAQFYTHGGAPSSTAVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTAN 60
           MSISSSSDQWRAQFYTHGGAPSSTAVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTAN
Sbjct: 1   MSISSSSDQWRAQFYTHGGAPSSTAVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTAN 60

Query: 61  FRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRET 120
           FRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRET
Sbjct: 61  FRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRET 120

Query: 121 PREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGNGYLA 177
           PREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGNGYLA
Sbjct: 121 PREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGNGYLA 176

[Close]

BLAST of Carg26323-RA vs. NCBI nr
Match: XP_023544848.1 (uncharacterized protein LOC111804320 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.0 bits (868), Expect = 2.5e-89
Identity = 168/175 (96.00%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MSISSSSDQWRAQFYTHGGAPSSTAVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTAN 60
           MSISSSSDQWRAQFYT GGAPSST VPRDAPNNNSISKPRRRSRASRKAPTTLLNASTAN
Sbjct: 1   MSISSSSDQWRAQFYTLGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTAN 60

Query: 61  FRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRET 120
           FRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLR+T
Sbjct: 61  FRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRDT 120

Query: 121 PREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGNGYL 176
           PREHGVPIPQG RGF GAAAELMEIQNLIDEDLNYDLEELGMEF SS+GNGNGYL
Sbjct: 121 PREHGVPIPQGGRGFPGAAAELMEIQNLIDEDLNYDLEELGMEFSSSNGNGNGYL 175

[Close]

BLAST of Carg26323-RA vs. NCBI nr
Match: XP_022977817.1 (uncharacterized protein LOC111478005 isoform X1 [Cucurbita maxima] >XP_022977818.1 uncharacterized protein LOC111478005 isoform X2 [Cucurbita maxima])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 168/176 (95.45%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MSI-SSSSDQWRAQFYTHGGAPSSTAVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60
           MSI SSSSDQWRAQFYTHGGAPSST VPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA
Sbjct: 1   MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60

Query: 61  NFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120
           NFRDLVQQFTGFHAAGAVVPFGSH+GPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE
Sbjct: 61  NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120

Query: 121 TPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGNGYL 176
           TPREHGVPIPQGNRG SGA AELMEIQNLIDEDLNYDLEELGMEFC S  NGNGYL
Sbjct: 121 TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCS--NGNGYL 174

[Close]

BLAST of Carg26323-RA vs. NCBI nr
Match: XP_038881626.1 (VQ motif-containing protein 22-like [Benincasa hispida])

HSP 1 Score: 248.8 bits (634), Expect = 3.4e-62
Identity = 133/175 (76.00%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 3   ISSSSDQWRAQFY--THGGAPSSTAVPRDAP--NNNSISKPRRRSRASRKAPTTLLNAST 62
           +S +SDQW +QFY   HGGA  S+A     P  N NSISKPRRRSRASRKAPTTLLNAST
Sbjct: 1   MSITSDQWASQFYHHPHGGASPSSATTHHGPNTNTNSISKPRRRSRASRKAPTTLLNAST 60

Query: 63  ANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDE-FHNNHPSVMLPFSDGRHFQL 122
           ANFRDLVQQFTGF AAGA +P GSHKGPVNLSFGQAGD+  HNNH SVMLPFSDG+ FQL
Sbjct: 61  ANFRDLVQQFTGFQAAGAALPLGSHKGPVNLSFGQAGDDHLHNNHSSVMLPFSDGQVFQL 120

Query: 123 RETPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGN 173
           R+T  EH  PIP  N GFS  AAELMEIQNLIDED NYDL+ELGMEF SSSGNGN
Sbjct: 121 RQTSPEHRFPIPVQNNGFSRPAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGN 175

[Close]

BLAST of Carg26323-RA vs. NCBI nr
Match: XP_008441071.1 (PREDICTED: uncharacterized protein LOC103485295 [Cucumis melo] >ADN34217.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 238.8 bits (608), Expect = 3.5e-59
Identity = 127/177 (71.75%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 3   ISSSSDQWRAQFY---THGGAPSSTAVPRDAP---NNNSISKPRRRSRASRKAPTTLLNA 62
           +S +SDQW  QFY   +HGGA +S+AV    P   N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWGTQFYAHHSHGGASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 63  STANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDE-FHNNHPSVMLPFSDGRHF 122
           ST+NFRDLVQQFTGFHAAGA +P GSHKGPVNLSFGQ GD+  HNNHPSVMLPFSDGR  
Sbjct: 61  STSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQDGDDHLHNNHPSVMLPFSDGRLL 120

Query: 123 QLRETPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGN 173
           Q R+ P E   P+   + GFS   AELMEI+NLIDEDL+YDL+ELGMEF SSSGNGN
Sbjct: 121 QRRQQPPEQRFPVAAESNGFSVPGAELMEIENLIDEDLSYDLQELGMEFSSSSGNGN 177

[Close]

BLAST of Carg26323-RA vs. ExPASy Swiss-Prot
Match: Q9LIE6 (VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.2e-06
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 28 RDAPNNNSISKP-RRRSRASRKAPTTLLNASTANFRDLVQQFTGFHAAGAVVPFGS 83
          R +P    ++KP RRRSRASR+ PTTLLN  T+NFR +VQQ+TG  +A A   FGS
Sbjct: 42 RLSPETGRVTKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMA---FGS 94

[Close]

BLAST of Carg26323-RA vs. ExPASy TrEMBL
Match: A0A6J1IJI1 (uncharacterized protein LOC111478005 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478005 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.7e-88
Identity = 168/176 (95.45%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MSI-SSSSDQWRAQFYTHGGAPSSTAVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60
           MSI SSSSDQWRAQFYTHGGAPSST VPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA
Sbjct: 1   MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60

Query: 61  NFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120
           NFRDLVQQFTGFHAAGAVVPFGSH+GPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE
Sbjct: 61  NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120

Query: 121 TPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGNGYL 176
           TPREHGVPIPQGNRG SGA AELMEIQNLIDEDLNYDLEELGMEFC S  NGNGYL
Sbjct: 121 TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCS--NGNGYL 174

[Close]

BLAST of Carg26323-RA vs. ExPASy TrEMBL
Match: E5GCL8 (VQ domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59
Identity = 127/177 (71.75%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 3   ISSSSDQWRAQFY---THGGAPSSTAVPRDAP---NNNSISKPRRRSRASRKAPTTLLNA 62
           +S +SDQW  QFY   +HGGA +S+AV    P   N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWGTQFYAHHSHGGASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 63  STANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDE-FHNNHPSVMLPFSDGRHF 122
           ST+NFRDLVQQFTGFHAAGA +P GSHKGPVNLSFGQ GD+  HNNHPSVMLPFSDGR  
Sbjct: 61  STSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQDGDDHLHNNHPSVMLPFSDGRLL 120

Query: 123 QLRETPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGN 173
           Q R+ P E   P+   + GFS   AELMEI+NLIDEDL+YDL+ELGMEF SSSGNGN
Sbjct: 121 QRRQQPPEQRFPVAAESNGFSVPGAELMEIENLIDEDLSYDLQELGMEFSSSSGNGN 177

[Close]

BLAST of Carg26323-RA vs. ExPASy TrEMBL
Match: A0A1S3B3C3 (uncharacterized protein LOC103485295 OS=Cucumis melo OX=3656 GN=LOC103485295 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59
Identity = 127/177 (71.75%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 3   ISSSSDQWRAQFY---THGGAPSSTAVPRDAP---NNNSISKPRRRSRASRKAPTTLLNA 62
           +S +SDQW  QFY   +HGGA +S+AV    P   N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWGTQFYAHHSHGGASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 63  STANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDE-FHNNHPSVMLPFSDGRHF 122
           ST+NFRDLVQQFTGFHAAGA +P GSHKGPVNLSFGQ GD+  HNNHPSVMLPFSDGR  
Sbjct: 61  STSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQDGDDHLHNNHPSVMLPFSDGRLL 120

Query: 123 QLRETPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGN 173
           Q R+ P E   P+   + GFS   AELMEI+NLIDEDL+YDL+ELGMEF SSSGNGN
Sbjct: 121 QRRQQPPEQRFPVAAESNGFSVPGAELMEIENLIDEDLSYDLQELGMEFSSSSGNGN 177

[Close]

BLAST of Carg26323-RA vs. ExPASy TrEMBL
Match: A0A0A0KII5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526440 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.2e-59
Identity = 131/181 (72.38%), Postives = 146/181 (80.66%), Query Frame = 0


Query: 3   ISSSSDQWRAQFY---THGGAPSSTAVPRDAP---NNNSISKPRRRSRASRKAPTTLLNA 62
           +S +SDQW  QFY   +HGG  +S+AV    P   N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWATQFYGHHSHGGVSTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 63  STANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDE-FHNNHPSVMLPFSDGRHF 122
           ST+NFRDLVQQFTGFHAAGA +P GSHKGPVNLSFGQ GD+  HNNHPSVMLPFSDG   
Sbjct: 61  STSNFRDLVQQFTGFHAAGASMPLGSHKGPVNLSFGQGGDDHLHNNHPSVMLPFSDGGLL 120

Query: 123 QLRE--TPREHGVPIPQGNRGFS--GAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNG 173
           Q R+  TP EH  P+P  + GFS  GAA +LMEIQNLIDEDL+YDL+ELGMEFCSSSGNG
Sbjct: 121 QRRQQATP-EHRFPVPVESNGFSVAGAADQLMEIQNLIDEDLSYDLQELGMEFCSSSGNG 180

[Close]

BLAST of Carg26323-RA vs. ExPASy TrEMBL
Match: A0A5D3CPL3 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010080 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 5.0e-59
Identity = 126/177 (71.19%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 3   ISSSSDQWRAQFY---THGGAPSSTAVPRDAP---NNNSISKPRRRSRASRKAPTTLLNA 62
           +S +SDQW  QFY   +HG A +S+AV    P   N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWGTQFYAHHSHGSASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 63  STANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDE-FHNNHPSVMLPFSDGRHF 122
           ST+NFRDLVQQFTGFHAAGA +P GSHKGPVNLSFGQ GD+  HNNHPSVMLPFSDGR  
Sbjct: 61  STSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQGGDDHLHNNHPSVMLPFSDGRLL 120

Query: 123 QLRETPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGN 173
           Q R+ P E   P+   + GFS   AELMEI+NLIDEDL+YDL+ELGMEF SSSGNGN
Sbjct: 121 QRRQQPPEQRFPVAAESNGFSVPGAELMEIENLIDEDLSYDLQELGMEFSSSSGNGN 177

[Close]

BLAST of Carg26323-RA vs. TAIR 10
Match: AT4G15120.1 (VQ motif-containing protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-08
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 3  ISSSSDQWRAQFYTHG----------GAPSSTAVPRD---APNNNSISKP-RRRSRASRK 62
          +++S++ W +QFY +              ++TA   D   +P+N  ++KP RRRSRASR+
Sbjct: 1  MANSNNDW-SQFYNNQTFFTTATSTVTTTTTTATSADSPLSPDNRRVAKPTRRRSRASRR 60

Query: 63 APTTLLNASTANFRDLVQQFTGFHAAGAVVPFGS 83
           PTTL N  TANFR +VQQFTG  +A   V FGS
Sbjct: 61 TPTTLFNTDTANFRAMVQQFTGGPSA---VAFGS 90

[Close]

BLAST of Carg26323-RA vs. TAIR 10
Match: AT4G20000.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 41  RRSRASRKA-PTTLLNASTANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFG 93
           RRSRASR+A PTTLLNA+ +NFR LVQ+FTG  A G        KGPV L FG
Sbjct: 51  RRSRASRRAIPTTLLNANPSNFRALVQKFTGRSAGG---ESNRRKGPVTLDFG 100

[Close]

BLAST of Carg26323-RA vs. TAIR 10
Match: AT1G35830.1 (VQ motif-containing protein )

HSP 1 Score: 52.4 bits (124), Expect = 4.4e-07
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 21  PSSTAVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTANFRDLVQQFTGFHAAGAVVPF 80
           P     P   P  +S   PR+R+RASR+APTT+L   T+NFR +VQ+FTG  A+    PF
Sbjct: 81  PPQPPPPPPPPPPSSSRNPRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPF 140

Query: 81  GS 83
            S
Sbjct: 141 SS 142

[Close]

BLAST of Carg26323-RA vs. TAIR 10
Match: AT3G22160.1 (VQ motif-containing protein )

HSP 1 Score: 52.4 bits (124), Expect = 4.4e-07
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 28 RDAPNNNSISKP-RRRSRASRKAPTTLLNASTANFRDLVQQFTGFHAAGAVVPFGS 83
          R +P    ++KP RRRSRASR+ PTTLLN  T+NFR +VQQ+TG  +A A   FGS
Sbjct: 42 RLSPETGRVTKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMA---FGS 94

[Close]

BLAST of Carg26323-RA vs. TAIR 10
Match: AT4G39720.1 (VQ motif-containing protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.7e-06
Identity = 35/98 (35.71%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 22  SSTAVPRDAPNNN--SISKPRRRSRASRKAPTTLLNASTANFRDLVQQFTGFHAAGAVVP 81
           +S+A     P NN   I K ++RSRASR+APTT+L   T+NFR +VQ+FTG  A     P
Sbjct: 95  TSSATSSLPPTNNIGVIKKTKKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAP----P 154

Query: 82  FGSHKGPVN-------LSFGQAGDEFHNNHPSVMLPFS 111
             ++   VN       L    +    +N +  ++ PF+
Sbjct: 155 LFNNNSIVNTTRLNTFLGLSSSSPNTYNTNNLLLRPFA 188

The following BLAST results are available for this feature:

BLAST of Carg26323-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581510.1	1.2e-94	100.00	hypothetical protein SDJN03_21512, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023544848.1	2.5e-89	96.00	uncharacterized protein LOC111804320 [Cucurbita pepo subsp. pepo]	[more]
XP_022977817.1	1.4e-87	95.45	uncharacterized protein LOC111478005 isoform X1 [Cucurbita maxima] >XP_022977818...	[more]
XP_038881626.1	3.4e-62	76.00	VQ motif-containing protein 22-like [Benincasa hispida]	[more]
XP_008441071.1	3.5e-59	71.75	PREDICTED: uncharacterized protein LOC103485295 [Cucumis melo] >ADN34217.1 hypot...	[more]

BLAST of Carg26323-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIE6	6.2e-06	57.14	VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1	[more]

BLAST of Carg26323-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJI1	6.7e-88	95.45	uncharacterized protein LOC111478005 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
E5GCL8	1.7e-59	71.75	VQ domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3B3C3	1.7e-59	71.75	uncharacterized protein LOC103485295 OS=Cucumis melo OX=3656 GN=LOC103485295 PE=...	[more]
A0A0A0KII5	2.2e-59	72.38	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526440 PE=4 SV=...	[more]
A0A5D3CPL3	5.0e-59	71.19	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Carg26323-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15120.1	3.0e-08	43.62	VQ motif-containing protein	[more]
AT4G20000.1	2.0e-07	62.26	VQ motif-containing protein	[more]
AT1G35830.1	4.4e-07	46.77	VQ motif-containing protein	[more]
AT3G22160.1	4.4e-07	57.14	VQ motif-containing protein	[more]
AT4G39720.1	3.7e-06	35.71	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 49..74 e-value: 1.3E-9 score: 37.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR33179:SF30	VQ MOTIF PROTEIN	coord: 27..110
IPR039609	VQ motif-containing protein 15/22	PANTHER	PTHR33179	VQ MOTIF-CONTAINING PROTEIN	coord: 27..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26323	Carg26323	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26323-RA:1	Carg26323-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26323-RA:cds	Carg26323-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26323-RA	Carg26323-RA-protein	polypeptide