Carg24075-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24075-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein RRP5
Location	Carg_Chr16: 5388038 .. 5390296 (-)
Sequence length	755
RNA-Seq Expression	Carg24075-RA
Synteny	Carg24075-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATTCGACTCTACAGCTTCTGGCCGGTGAGGCTTCTTCTCGCTTCTTGCATTTTTCTTCCTTAGGGTTTTCGTTGTTAGTCTCCTCAGCGCTTATCTCTCAGCGATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAACCGAAAATACCGCTCAAGAGCTCCCTCAAGGTACGTTTGAGTTGTTTGAGAAAGGATTGTTGATAGTATTATCGGATAGATTCAGAATTGTATCCTCCAGATGTTTGTACTTGTCCTTATTTCTTTACTGATCCTCTTTAAAATGTTTCAGAACTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATATATGTTTTCTTTGAGTAGTTTTGAAATTTTAACTTATTTCCGCTTGAATCTGTAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTGTAAGCTTCTACCTGGGAATTGTGGTTTATTCTTTAATTTCATGGTCTGGGACGTAGTTTCACTTTAACTCCAATTCCATTCTGCGCTTTTGTTGTTTTTTGTTTTTAATTCGTGTGCTCTCAGTTCCTGATTTTTGTTATGATTGGCCCAAATTTGTTCATTTTCGGATGAGGCTGAAAAATTAGGGGTGATATTATAAAGGGCATAACTTCTCTGATTAGAGTTAATTGAGCATCTTACCACAAAAAGTAGTGAATCAACTCCCAGAAAACTTTTGATTCCATACTGCTACCTTTCATATGTAGCCACATTACTACTGATTATTATTATTATAATTGGTGGGTCGCTTATAACTTTAAATGCTTAGCTACATGGCTAATAATTAGTGAAAACAGTGCGAGGAATACGTCTTGGAAAGGGTAAATGAGGGAAAACCTTCTATGGTCTATCTTGATAACCTTGTTCAACTTTTTTCATTGAAATTCTATTTTTTATGCCGTTTTTCTCATTAGATGTGTATGTACCTGAGTGTGTAGAGTATTTTTCATGTATTTATATTTTCAAAATAACACCATGATAATTTTAATACACTTGAGGAGTACTTTACTCTTGGTTTCCTTCAAGAACATTTACTACAGTAGTAGGAAGCATCTTATGCACCCCTTTGATTCGTTTCTAGCCACCAAACTTATTAATATAAACAACTGTTAGGCCCCCAATTGTAAATGTTTATACTTGAGAGGGTAAAAGGGTAAAGTGGGAGAGTAGGAAGGAGGGGAGGAAGATCAGTTTTCTTGGGACTTGTAGAGCGTTTTCGGGAGCGAGACAACCCTTTCGAATTGACTGAACTTTGAATGGTGACATTGTCACTTGTTTATCTTTCCTATATTAGTAAAATGTAAAATGTAAAATGTAAAATGGTACTATTGGTTTCTGTTGTATTGAATACGATGCTTTTCAAATGAAAATGAACGTGTGCATGTAAATTGGTATGATGCTCAATTTGTTAATGCCTTGAAGAAGATTATGATTGAAACCCTCCCATGTTTTCAAAGATTATTGGCATTTGACCTATAATTTGCTGAATCCCAGTCAATTACCTGGGGAATGGTTGGATAGTATGCATCTGTTAGTACTAACCAAACAAGACAATTCCTTGGGTTTTGATAGTATGCATTGCTGTTTAACTTTGGTTGTCATGGAAATTTGAAGCCACCTTTTCCCTGTTTGGGCCACAGACTCTGATCATTACTCATTGTTGTGACAGAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCAGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTGTATGAATGATAGAAATGTGGGTTTAAATTGTAAAATTGTTTTATTTTTGTTCCTTTAATAGATGTTTATGGTACCTATCACTCATCATTTAGTGTCTCAATCCTGCAACTTCTAAGTTTCAAGTCACTTGTGAAATCCAAGCTATTCGCACAAATTTGTTTTAGAAAAGGAATTGTCTACTTGTGTAAGTCTATCGTCACTAGCAGGTGGCAATAGCATTAGGAGCTGGAAATTCTTATTCCTTCTTTGGACCACTCAGGTATTACACAAATCCTTATAGACGGAGTTCAAATGAGATCAAATCGCGTATTAATCTTTTTAACAAATTTAGTTTGTGATCTAGTCTTATACAAATTTA

mRNA sequence

AATATTCGACTCTACAGCTTCTGGCCGGTGAGGCTTCTTCTCGCTTCTTGCATTTTTCTTCCTTAGGGTTTTCGTTGTTAGTCTCCTCAGCGCTTATCTCTCAGCGATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAACCGAAAATACCGCTCAAGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCAGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTGTATGAATGATAGAAATGTGGGTTTAAATTGTAAAATTGTTTTATTTTTGTTCCTTTAATAGATGTTTATGGTACCTATCACTCATCATTTAGTGTCTCAATCCTGCAACTTCTAAGTTTCAAGTCACTTGTGAAATCCAAGCTATTCGCACAAATTTGTTTTAGAAAAGGAATTGTCTACTTGTGTAAGTCTATCGTCACTAGCAGGTGGCAATAGCATTAGGAGCTGGAAATTCTTATTCCTTCTTTGGACCACTCAGGTATTACACAAATCCTTATAGACGGAGTTCAAATGAGATCAAATCGCGTATTAATCTTTTTAACAAATTTAGTTTGTGATCTAGTCTTATACAAATTTA

Coding sequence (CDS)

ATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAACCGAAAATACCGCTCAAGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCAGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTGTATGAATGA

Protein sequence

MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE

Homology

[Close]

BLAST of Carg24075-RA vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN
Sbjct: 278 MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 337

Query: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 100
           VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE
Sbjct: 338 VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 376

[Close]

BLAST of Carg24075-RA vs. NCBI nr
Match: XP_022929206.1 (uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothetical protein SDJN02_23107 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 100
           VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

[Close]

BLAST of Carg24075-RA vs. NCBI nr
Match: XP_022985277.1 (uncharacterized protein LOC111483316 [Cucurbita maxima])

HSP 1 Score: 170.6 bits (431), Expect = 6.6e-39
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKNKN KKRSGAISMDITENTA ELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 100
           VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 98

[Close]

BLAST of Carg24075-RA vs. NCBI nr
Match: XP_038903593.1 (uncharacterized protein LOC120090147 [Benincasa hispida])

HSP 1 Score: 154.8 bits (390), Expect = 3.8e-34
Identity = 85/99 (85.86%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+NKKKRSG +SMD+TENT  ELPQAMDVSESAVHKP SGALNLKLKKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRSGPVSMDVTENTVHELPQAMDVSESAVHKPTSGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 100
           VRKT A AKAISK+EQS EKILKNQSKT RI SAK LYE
Sbjct: 61  VRKTKAMAKAISKSEQSTEKILKNQSKTARIQSAKALYE 99

[Close]

BLAST of Carg24075-RA vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 2.4e-33
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+NKKKR GA+SMD+TEN+  ELPQAMDVS S VHKPASGAL+LKLKKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 100
           VRKT A AKAISK+EQS EKILKNQSKTTRI SAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Carg24075-RA vs. ExPASy TrEMBL
Match: A0A6J1EMH0 (uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC111435867 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 100
           VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

[Close]

BLAST of Carg24075-RA vs. ExPASy TrEMBL
Match: A0A6J1J4F8 (uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.2e-39
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKNKN KKRSGAISMDITENTA ELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 100
           VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 98

[Close]

BLAST of Carg24075-RA vs. ExPASy TrEMBL
Match: A0A1S3BUB2 (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+NKKKR GA+SMD+TEN+  ELPQAMDVS S VHKPASGAL+LKLKKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 100
           VRKT A AKAISK+EQS EKILKNQSKTTRI SAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Carg24075-RA vs. ExPASy TrEMBL
Match: A0A6J1CP23 (uncharacterized protein LOC111012789 OS=Momordica charantia OX=3673 GN=LOC111012789 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 16 MDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKNVRKTMAKAKAISKNE 75
          MD+TENT  +LPQAMDVSES VHKP SG LNLKL+KGRPMKRS+NVRKT A AKAI K+E
Sbjct: 1  MDLTENTVVDLPQAMDVSESGVHKPVSGGLNLKLRKGRPMKRSQNVRKTKAMAKAICKSE 60

Query: 76 QSAEKILKNQSKTTRIHSAKTL 98
          QSAEKI+KNQSKTTRI SAKTL
Sbjct: 61 QSAEKIMKNQSKTTRIQSAKTL 82

[Close]

BLAST of Carg24075-RA vs. ExPASy TrEMBL
Match: A0A6A6MLZ5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+NKKK++GA+SMDITE T  ++PQAMD SES V K ASG  N K+ KGRPMKRSKN
Sbjct: 1   MAKNRNKKKKNGAVSMDITEPTVSDVPQAMDTSESVVQKSASGFPNRKV-KGRPMKRSKN 60

Query: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 100
           VRK  A AKAISKNEQS EK+LKN+SKT R  SAK LY+
Sbjct: 61  VRKMKAVAKAISKNEQSVEKVLKNESKTARTQSAKLLYD 98

[Close]

BLAST of Carg24075-RA vs. TAIR 10
Match: AT4G27380.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.5e-04
Identity = 47/156 (30.13%), Postives = 65/156 (41.67%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITE--NTAQELPQAMDVSESAVHKPASGALNL-KLKKGRP--- 60
           M K +NKK R    SMD++E  + ++  PQ MD +E+   K AS A +L   +KG+P   
Sbjct: 1   MTKKRNKKNRDEEASMDVSESQSVSEATPQVMDTTETGDGKLASRARSLMSTRKGKPMKR 60

Query: 61  ---------------------------------------------------MKRSKNVRK 100
                                                              MKR+KN RK
Sbjct: 61  TKIAMNMKAVAVAMDTTETGDVKLATETGDLKVATETGYLKLATLSRNPTNMKRTKNARK 120

The following BLAST results are available for this feature:

BLAST of Carg24075-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577394.1	2.4e-41	100.00	Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022929206.1	2.4e-41	100.00	uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothet...	[more]
XP_022985277.1	6.6e-39	97.98	uncharacterized protein LOC111483316 [Cucurbita maxima]	[more]
XP_038903593.1	3.8e-34	85.86	uncharacterized protein LOC120090147 [Benincasa hispida]	[more]
XP_008452291.1	2.4e-33	84.85	PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]	[more]

BLAST of Carg24075-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24075-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMH0	1.2e-41	100.00	uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC1114358...	[more]
A0A6J1J4F8	3.2e-39	97.98	uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316...	[more]
A0A1S3BUB2	1.2e-33	84.85	uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=...	[more]
A0A6J1CP23	1.0e-24	81.71	uncharacterized protein LOC111012789 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6A6MLZ5	2.2e-24	70.71	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1	[more]

BLAST of Carg24075-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27380.1	2.5e-04	30.13	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..99
None	No IPR available	PANTHER	PTHR36385	OS07G0562900 PROTEIN	coord: 1..99

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24075	Carg24075	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24075-RA:3	Carg24075-RA:3	exon
Carg24075-RA:2	Carg24075-RA:2	exon
Carg24075-RA:1	Carg24075-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24075-RA:three_prime_utr	Carg24075-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24075-RA:cds	Carg24075-RA:cds_3	CDS
Carg24075-RA:cds	Carg24075-RA:cds_2	CDS
Carg24075-RA:cds	Carg24075-RA:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24075-RA:five_prime_utr	Carg24075-RA:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24075-RA	Carg24075-RA-protein	polypeptide