Carg23856-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23856-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 4156813 .. 4157964 (-)
Sequence length225
RNA-Seq ExpressionCarg23856-RA
SyntenyCarg23856-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGGGCAGTTTGAATCAGACGATTGCGGCCAGTTTCATTCAGACGATTGCGGCCAGTTTCATTCAGACGCAAATGTAGAGTTTGAATCAGACACAGAGAGATACGATCTCATCAAACTCAGCTCTCCGTGCTCTGATAGGTTACATTTCATTTTAGAAACTATGTTATATTAATTATCTTTTGAGGCTTCCGCTTTTTATTTTTATTTTTTTTATAATGATCAATCGTGCACTTGACGAGTCTGATTCTTCGTTCTTTGCTTATTCTGTGGAATTTGTTGAAGTTGAAGTTATGATCAATTCATTTCCAGCGAAATCTGGTTCGTGGATGGTGAAATTTCACCAATGCTTGTTAAATTAGGGGAAATCTGCGACGCTCGAAAACAGTTCATCATCTTAATGACCGGATTTTACTGCATGCTTTGATGATTCATTCCGAGAAAAGAAATGGACTATGTTCTTTCATCATTCTTTTTTATCCTTGACATTTTCTCCTAAAACTTGATGAAAATTTTAGTGTGTTATCTTACTTCGATTGAGCTCATCCGTCGCTAGAAATTATAGTCTCACACTGAGAAAAAAGAATAGTATGATCGAAGAATTTTAGTGTGTATTTGGTCTTAGAATCTCTGTGATTGTCTGCCTCTTTTTACCCTCCTTTAATGAAAGCTCATTGCTCTTCATCATGTTTTGGCAGAGTGACCTCCATGTCGATTAAGTTGCTGGCGCAGGAACATTTTCCTGGAATCATTGTTACTCTTTCTCATTATCCTCCGGCTCAGCCAATTCTATTGCTTCGAAACCTATATCAACTGCACAAATATTGATTATAATGACAGTGATGGCTGATAAACATATTTTTCTCCGCAGACAGATTCTTTTATCATTTTTTATCATTGCAATCCCTTGGCCTCTTGGGCTGCATAACTATAAATCACCTCCAGAACACTGAAGGCTTTGAAATTGTCTTCAATGATGAACTGGTACTGAACTTTTATGTACATTTTAGAAATGATTCTATTTTCCAAAAGAATCAAACTCATTTCCTCTTGCTTTCTCTTATTCAGGTGTTCTGTACACAATAGGTGGGAAGTTTCATACGCAGTTGACTTGCCTGTTGAAGAGCATGGCAGTAAAATTTCGTCACATCCG

mRNA sequence

TGCGGGCAGTTTGAATCAGACGATTGCGGCCAGTTTCATTCAGACGATTGCGGCCAGTTTCATTCAGACGCAAATGTAGAGTTTGAATCAGACACAGAGAGATACGATCTCATCAAACTCAGCTCTCCGTGCTCTGATAGGTGTTCTGTACACAATAGGTGGGAAGTTTCATACGCAGTTGACTTGCCTGTTGAAGAGCATGGCAGTAAAATTTCGTCACATCCG

Coding sequence (CDS)

TGCGGGCAGTTTGAATCAGACGATTGCGGCCAGTTTCATTCAGACGATTGCGGCCAGTTTCATTCAGACGCAAATGTAGAGTTTGAATCAGACACAGAGAGATACGATCTCATCAAACTCAGCTCTCCGTGCTCTGATAGGTGTTCTGTACACAATAGGTGGGAAGTTTCATACGCAGTTGACTTGCCTGTTGAAGAGCATGGCAGTAAAATTTCGTCACATCCG

Protein sequence

CGQFESDDCGQFHSDDCGQFHSDANVEFESDTERYDLIKLSSPCSDRCSVHNRWEVSYAVDLPVEEHGSKISSHP
Homology
[Close]
BLAST of Carg23856-RA vs. NCBI nr
Match: KAG7035360.1 (hypothetical protein SDJN02_02155, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 3.6e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  CGQFESDDCGQFHSDDCGQFHSDANVEFESDTERYDLIKLSSPCSDRCSVHNRWEVSYAV 60
          CGQFESDDCGQFHSDDCGQFHSDANVEFESDTERYDLIKLSSPCSDRCSVHNRWEVSYAV
Sbjct: 1  CGQFESDDCGQFHSDDCGQFHSDANVEFESDTERYDLIKLSSPCSDRCSVHNRWEVSYAV 60

Query: 61 DLPVEEHGSKISSHP 76
          DLPVEEHGSKISSHP
Sbjct: 61 DLPVEEHGSKISSHP 75

[Close]
BLAST of Carg23856-RA vs. NCBI nr
Match: KAG6605410.1 (hypothetical protein SDJN03_02727, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0 

Query: 4  FESDDCGQFHSDDCGQFHSDANVEFESDTERYDLIKLSSPCSDRCSVHNRWEVSYAVDLP 63
          FESDDCGQFHSDDCGQFHSDANVEFESDTERYDLIKLSSPCSDR +       S ++ L 
Sbjct: 19 FESDDCGQFHSDDCGQFHSDANVEFESDTERYDLIKLSSPCSDRVT-------SMSIKLL 75

Query: 64 VEEH 68
          V+EH
Sbjct: 79 VQEH 75

[Close]
BLAST of Carg23856-RA vs. NCBI nr
Match: KAG6605409.1 (hypothetical protein SDJN03_02726, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 48 CSVHNRWEVSYAVDLPVEEHGSKISSHP 76
          CSVHNRWEVSYAVDLPVEEHGSKISSHP
Sbjct: 5  CSVHNRWEVSYAVDLPVEEHGSKISSHP 32

The following BLAST results are available for this feature:
BLAST of Carg23856-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035360.13.6e-37100.00hypothetical protein SDJN02_02155, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6605410.11.4e-1776.56hypothetical protein SDJN03_02727, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605409.12.3e-07100.00hypothetical protein SDJN03_02726, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg23856-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23856-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23856-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg23856Carg23856gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23856-RA:2Carg23856-RA:2exon
Carg23856-RA:1Carg23856-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23856-RA:cdsCarg23856-RA:cds_2CDS
Carg23856-RA:cdsCarg23856-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg23856-RACarg23856-RA-proteinpolypeptide