Carg23444-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23444-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PITH domain-containing protein
Location	Carg_Chr05: 10766193 .. 10769943 (+)
Sequence length	599
RNA-Seq Expression	Carg23444-RA
Synteny	Carg23444-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTTACACAGAATTCATTCCCATTTTCCTTCTTCTTTTCCTTCTCCTCTCGTTCGATTAGCTATGGCTGCCGCATCTGCAACCGCTATTCATCGGAATCAGGTGAGTGATTCAAGTTCTTGCGGCGTTTGGTTATTAAATTCATGCTTAGTTTTCGAGAAATGATTAAGGATGATGTTAAAACTTGAATCTGGCTGGGAGTTTCAGGATTGTATTGCTTTAAGCTTGGTTTTCTTTTTCTTCTCATACTGATGCTTCGTTTTTAACCAGGTTGATCTGTCCGACTTCATTAATTGGTCTGGCGTCGAGTGCCTTAACCAGAATTTCAGCCACACTTTTACAAATGCTCTTAACCAGGTGCTGTTTATTATTATTTTGACTCGAGCTGTTAGTCAGTTGCTTGAACTTCGTTGTTGTTTTTGAATTTCTTAAATAATTCATTTTTATGAAGTTAAAGATGATGCTGAGTTAGACTCGCGTTTTTCCACAATATAATTTACATCTATTATTCCTTTCTAATTGCAAGAGATGGGAAGTTGTGAATATGGAGGTCAGCAAGGTTGGCTAGGTAGATGGAAGTTGATGAATATAAATTTAGCTCTTTGGGTCAAGTTGGCGAATAATTCCCTTTGAAAATTTAGCTCATTGATTTCTGTTTTTCATCTTATAAGACATCTTTGTGATATTGAGTTACGAAATTTGTCGAATCTTTCTCTGTTTTAGTAGTACGCGTAGTTGGGTTCTTCAGCCATCTAGCATCTTTTTTTTTTCTTTTTTTGTAAACAATCCCCCCCTTTTCACTCTGATTTTGGAGGTTAAAATCTCAAAGAAGATAAAGTTTTTCACCTACCTGATTTCCTTGGGTAGATTATGCGTACCCCATAGACTTTGTCTAAGAGCCATCATCTATGGTTTTGGGCCATCAGTCGTATGTGTTGTATACAAACCAATAAAAGATACTGATCATTTTCTATAGAGATGTGACTTTGTTGTGAAAATTAGAACCGATTTTTGCACATGTTTGGAGTTAGTTTGATTACTCCCAAAGATTGTAGGGATGAGGTGGAGAAGGTGCTTGTTAACCCAAATTTCCATGATTAGGGTCTGAATCAATGCCAAAAAATGTCTTCACAAATTTATTGAATCCATGGCTCGAAAAGAAATAAAGTATTTTAAGGGTAGTCTTGAAAGAAAGAGTCTTGAAATATGGAACATCTTAATATCTCTCTATTCCAGTGTTCTCGTCTAAAGTGTTATGAAATTATATCTTTATGTTTTTATTTTTATCTATTGGACCAACCTATTGTAATTTTGTTTCAGGTTTTGTTTTTAGATTGCTTATTTGTTTGGGCCACTCTTCTTATACATTCATTCATCTTATTAAAAGATGATGTATTATAAATATAAACGTCAAAAGTATCATTTTGGTTCTTCAACTTTGGACTAAATTTGAATATTTTGAAAGAACAAGGACTAAAATAGAACAAGTTCCAAAGTGGAAGGACAAAAATGATACTATAACCTAAAATAATTTTTTTTTTTTAATGATAAAATAGGTTTCTCTTTTTCCCCTTAATTTATTCCCAACTGCCAAGGGAAATTATTATACCGAAGGTTTGAAACAACTTTTTTTCTAAATTAGACTTGTAGGGATAATGATAGCTTGCTTTTGGAGAGTGATGCAGATGAGCAGCTTTTGATATATATACCTTTTAACCAAGTCATTAAATTGCATTCCTTGGTCATTAAGGGACCTGAAGAGGAAGGTGAGAACTCTATCTATTACACCATTTTTTAATTCTAGTTCATGGTTTCTTCTCTCCTGAGTATTTCAGTACTGCTTGCATGTATATCATAGTTCATCTCATCTATTGGCATAGAAAATTTGTAACGTGGCTTACAATCCAACATGGTCATTGAGGGTATGATAATTCCATTTTAAATTTTTACTATTTGATTACTGTTATTTTGGGTTATCCCACTCCCTGTCCCTTGCCCCTCCAGTCCTCTAGTCTTGTAAATCCCTTGTCGTACTGCAGTTTCTTGGTGTGGTGAGGGAGTAATGGACTGTGGACAGAGGAATGGAAAAATTTTCGGGGTTGGATAGAAACACAACATTGAGTTTCGGAGTGGATAAATGTGCTTTCTATCAAAAACTTTTGTAATTATCTCTTTACGTAATCGCAGTCAATCGAGAAGTTCTTTTTTTTTTTAGTAATTATTGGCTGTGGGAGGATATCTAATCCTAATCCTCCCTGTCCTTTATTTACTCTCGTTCCGCTATGTATTTCTTCTATTCAGAGAATACATCTCATTTTAAATGAAAAAACTACTGAATCACTTCGTCAGGAACGTTATTTGTCTTTCACCTTTCTGTATTTTGTTCTGCTTAACTGTCAAATCACAGGGTTTTAATATTGAGGTTATTCTCCAGGCCCTAGGACTGTAAAGCTTTTCTCAAACAAGGAGAATATGGGATTTGGGTAAACGAATTGTTTTCTTTAGTTAATATTTGGTGCAAGTGTTTTCTAAATATTATAATCTGATGATTGTTTGTTTCATGAACGTTGCAGCAATGTCAATGACTACCCTCCCAGTGACACGATTGTGCTCTCCCCAGATAATCTTACGGTAGATTTTCCCATACTTGTATCTGTATCTCATCACCAAATGGAAAACTCTTTAGGTGAGATTATCCACAGAAACTGGTAGATCATTGTTTTGTTGGTTATGCTTTGTAGGGAAAGCCAGAAGTTGTAAAGTACGTGAAATTTCAAAATGTTCGTAGGTAAGTCATTGCGGTCATCGGAGTTAATTTTCTTCATTTAGATCGTATATTGAAAGTCCCTGTTGATTGTTCTGAACTATTCAATTCTTTATCAGCTTGACAATTTTTATAGAGGATAACCAATCTGGAGCTGACGTTACAAAAGTTCAAAAGATTGCCTTGTATGGAACAACGTAAGTTGTTTTAACAATTACCATTATAATTCATTTTAGTTAATTTTATCTTCATCTTGCTGAATTACTACATTGCACAATCAGCAAGCTTAGATGAGATGACTTTATGTTTAGATTACTTTGACCAATAGAGTAATAGCATATGAACGTACATCCAAAGGGGACGCATTTTCGAGGAAAGTAATAAGTGAAGCAATGCTTAGATAGTTCATCTTTGGAAATTCCATTCTAGAGTTTTGCTACTTGATGTTGGCTGACAAAGAATTTAAACCTCATCTTTCTTTATAGATGGCAGAATATTGTTTTCTTTGAGCTTTCCCTTCAAGGGCTTCCTCTCAAGGTTTTTAAATCACGTCTGTTAGGGAGAGGTTTCCACACTCTTATAAAGAATGCTTCGTTCTCCACTCTAACCAACGTGGGATCTCACAATTAGTATATGCATTTCTTATCGGCAACCGTAGTAGTAAGATAACGAATAGTCCTCTCGAGTTCTTTTTACGTATTTTGTTCCACGATGAGAAATCCATGTCTTTTGCTTTAGGGGATTGCATCAATTTCAAACTATAGTCCTACATTAATTATGTAGACCATCTCATGTACTGTAATCTAAATTTATATCACACATGATTGGGATTGTGATCCATGATGGGTTTGGAATAGATGAAACAACATTCAACTCCATTTCATTATTTCTTTATGCTCGGTGAAGTGTTGAAGTTGTTGATCTGTTATGCAGGGTTGAAACAACTGACATGAAGGGTCTGAAGAAGATCGAGGATCACTGAATGC

mRNA sequence

GAATTTACACAGAATTCATTCCCATTTTCCTTCTTCTTTTCCTTCTCCTCTCGTTCGATTAGCTATGGCTGCCGCATCTGCAACCGCTATTCATCGGAATCAGGTTGATCTGTCCGACTTCATTAATTGGTCTGGCGTCGAGTGCCTTAACCAGAATTTCAGCCACACTTTTACAAATGCTCTTAACCAGACTTGTAGGGATAATGATAGCTTGCTTTTGGAGAGTGATGCAGATGAGCAGCTTTTGATATATATACCTTTTAACCAAGTCATTAAATTGCATTCCTTGGTCATTAAGGGACCTGAAGAGGAAGGCCCTAGGACTGTAAAGCTTTTCTCAAACAAGGAGAATATGGGATTTGGCAATGTCAATGACTACCCTCCCAGTGACACGATTGTGCTCTCCCCAGATAATCTTACGGGAAAGCCAGAAGTTGTAAAGTACGTGAAATTTCAAAATGTTCGTAGCTTGACAATTTTTATAGAGGATAACCAATCTGGAGCTGACGTTACAAAAGTTCAAAAGATTGCCTTGTATGGAACAACGGTTGAAACAACTGACATGAAGGGTCTGAAGAAGATCGAGGATCACTGAATGC

Coding sequence (CDS)

ATGGCTGCCGCATCTGCAACCGCTATTCATCGGAATCAGGTTGATCTGTCCGACTTCATTAATTGGTCTGGCGTCGAGTGCCTTAACCAGAATTTCAGCCACACTTTTACAAATGCTCTTAACCAGACTTGTAGGGATAATGATAGCTTGCTTTTGGAGAGTGATGCAGATGAGCAGCTTTTGATATATATACCTTTTAACCAAGTCATTAAATTGCATTCCTTGGTCATTAAGGGACCTGAAGAGGAAGGCCCTAGGACTGTAAAGCTTTTCTCAAACAAGGAGAATATGGGATTTGGCAATGTCAATGACTACCCTCCCAGTGACACGATTGTGCTCTCCCCAGATAATCTTACGGGAAAGCCAGAAGTTGTAAAGTACGTGAAATTTCAAAATGTTCGTAGCTTGACAATTTTTATAGAGGATAACCAATCTGGAGCTGACGTTACAAAAGTTCAAAAGATTGCCTTGTATGGAACAACGGTTGAAACAACTGACATGAAGGGTCTGAAGAAGATCGAGGATCACTGA

Protein sequence

MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQLLIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTGKPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH

Homology

[Close]

BLAST of Carg23444-RA vs. NCBI nr
Match: XP_022946891.1 (PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_022946892.1 PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_022946893.1 PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_022999328.1 PITH domain-containing protein At3g04780-like [Cucurbita maxima] >XP_022999329.1 PITH domain-containing protein At3g04780-like [Cucurbita maxima] >XP_023521729.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023521946.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023545536.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023545537.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023545538.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >KAG6599300.1 PITH domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030300.1 PITH domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.9 bits (912), Expect = 2.0e-94
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL
Sbjct: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. NCBI nr
Match: XP_038891254.1 (PITH domain-containing protein At3g04780 [Benincasa hispida])

HSP 1 Score: 352.4 bits (903), Expect = 2.2e-93
Identity = 173/176 (98.30%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASAT IHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL
Sbjct: 1   MAAASATGIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSGAD TK+QKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADTTKIQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. NCBI nr
Match: XP_022937687.1 (PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_023521129.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023537940.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 171/176 (97.16%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASATAIHRNQVDLSDFINWSG+ECLNQNFSHTFTNAL+QTCRDNDSLLLESDADEQ+
Sbjct: 1   MAAASATAIHRNQVDLSDFINWSGIECLNQNFSHTFTNALSQTCRDNDSLLLESDADEQI 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           L+YIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LMYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSGAD TKVQKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADTTKVQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. NCBI nr
Match: XP_008455826.1 (PREDICTED: PITH domain-containing protein At3g04780 [Cucumis melo] >KAA0063617.1 PITH domain-containing protein [Cucumis melo var. makuwa] >TYK18409.1 PITH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 349.4 bits (895), Expect = 1.9e-92
Identity = 171/176 (97.16%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASATAI+RNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL
Sbjct: 1   MAAASATAINRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           LIYIPFNQV+KLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LIYIPFNQVVKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSG D TK+QKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGTDTTKIQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. NCBI nr
Match: XP_022965977.1 (PITH domain-containing protein At3g04780-like [Cucurbita maxima])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 170/176 (96.59%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASATAIHRNQVDLSDFINWSG+ECLNQNFSHTFTNAL+QTCRDNDSLLLESDADEQ+
Sbjct: 1   MAAASATAIHRNQVDLSDFINWSGIECLNQNFSHTFTNALSQTCRDNDSLLLESDADEQI 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           L+YIPFNQVIKLHSLVIKG EEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LMYIPFNQVIKLHSLVIKGHEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSGAD TKVQKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADTTKVQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. ExPASy Swiss-Prot
Match: Q9SQZ9 (PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana OX=3702 GN=At3g04780 PE=1 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 2.5e-71
Identity = 134/176 (76.14%), Postives = 152/176 (86.36%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           M+A SA+ I + QVDL DFI+WSGVECLNQ+ SH+  NAL Q  R+++ L LESDADEQL
Sbjct: 1   MSAESASQIPKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQL 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           LIYIPFNQVIKLHS  IKGPEEEGP+TVK FSNKE+M F NVND+PPSDT  L+ +NL G
Sbjct: 61  LIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KP V+KYVKFQNVRSLTIFIE NQSG++VTKVQKIALYG+TVETTDMKGLKKIEDH
Sbjct: 121 KPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGSTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. ExPASy Swiss-Prot
Match: O43396 (Thioredoxin-like protein 1 OS=Homo sapiens OX=9606 GN=TXNL1 PE=1 SV=3)

HSP 1 Score: 122.1 bits (305), Expect = 6.3e-27
Identity = 67/170 (39.41%), Postives = 100/170 (58.82%), Query Frame = 0


Query: 7   TAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQLLIYIPF 66
           T I +  +DL  FIN +G ECLN++  H F N     C   D+  LESD DEQLLI + F
Sbjct: 117 TDIPKGYMDLMPFINKAGCECLNESDEHGFDN-----CLRKDTTFLESDCDEQLLITVAF 176

Query: 67  NQVIKLHSLVIKGPEE-EGPRTVKLFSN-KENMGFGNVNDYPPSDTIVLSPDNLTGKPEV 126
           NQ +KL+S+  +GP+  +GP+ VK+F N   +M F       P+  + L+ D++     V
Sbjct: 177 NQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIV 236

Query: 127 -VKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKI 174
            ++YVKFQNV S+TIF++ NQ   + T++      GT V+ T+M   K++
Sbjct: 237 PLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKRV 281

[Close]

BLAST of Carg23444-RA vs. ExPASy Swiss-Prot
Match: Q920J4 (Thioredoxin-like protein 1 OS=Rattus norvegicus OX=10116 GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 3.1e-26
Identity = 66/170 (38.82%), Postives = 99/170 (58.24%), Query Frame = 0


Query: 7   TAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQLLIYIPF 66
           T I +  +DL  FIN +G ECLN++  H F N     C   D   LESD DEQLLI + F
Sbjct: 117 TDIPKGYMDLMPFINKAGCECLNESDEHGFDN-----CLRKDLSFLESDCDEQLLITVAF 176

Query: 67  NQVIKLHSLVIKGPEE-EGPRTVKLFSN-KENMGFGNVNDYPPSDTIVLSPDNLTGKPEV 126
           NQ +KL+S+  +GP+  +GP+ VK+F N   +M F       P+  + L+ D++     V
Sbjct: 177 NQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIV 236

Query: 127 -VKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKI 174
            ++YVKFQNV S+T+F++ NQ   + T++      GT V+ T+M   K++
Sbjct: 237 PLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKRV 281

[Close]

BLAST of Carg23444-RA vs. ExPASy Swiss-Prot
Match: Q8CDN6 (Thioredoxin-like protein 1 OS=Mus musculus OX=10090 GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-26
Identity = 65/168 (38.69%), Postives = 98/168 (58.33%), Query Frame = 0


Query: 9   IHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQLLIYIPFNQ 68
           I +  +DL  FIN +G ECLN++  H F N     C   D   LESD DEQLLI + FNQ
Sbjct: 119 IPKGYMDLMPFINKAGCECLNESDEHGFDN-----CLRKDMSFLESDCDEQLLITVAFNQ 178

Query: 69  VIKLHSLVIKGPEE-EGPRTVKLFSN-KENMGFGNVNDYPPSDTIVLSPDNLTGKPEV-V 128
            +KL+S+  +GP+  +GP+ VK+F N   +M F       P+  + L+ D++     V +
Sbjct: 179 PVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPL 238

Query: 129 KYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKI 174
           +YVKFQNV S+T+F++ NQ   + T++      GT V+ T+M   K++
Sbjct: 239 RYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKRV 281

[Close]

BLAST of Carg23444-RA vs. ExPASy Swiss-Prot
Match: Q9USR1 (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=txl1 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.1e-22
Identity = 64/178 (35.96%), Postives = 96/178 (53.93%), Query Frame = 0


Query: 3   AASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQLLI 62
           A+S++A  +    L   I    +ECLNQ   H   +A N     N S  LESD DEQL+I
Sbjct: 116 ASSSSAPVKGFASLQGCIENPQLECLNQQDDHDLKSAFN----SNPSSFLESDVDEQLMI 175

Query: 63  YIPFNQVIKLHSLVI---KGPEEEGPRTVKLFSNK-ENMGFGNVNDYPPSDTIVLSPDNL 122
           YIPF +V+K+HS+ I   KG     P+T+KL+ N+  N+ F +   + P+  I       
Sbjct: 176 YIPFLEVVKVHSIAITPVKGETSSAPKTIKLYINQPNNLSFEDAESFTPTQVIEDIVYEQ 235

Query: 123 TGKPEVV--KYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIE 175
             +P ++  ++VKFQ V SL IFI  N    + TK+ ++ L+G  V  +    L+K+E
Sbjct: 236 DDQPTIIPLRFVKFQRVNSLVIFIYSNVGEEETTKISRLELFGEPVGDSSKGKLQKVE 289

[Close]

BLAST of Carg23444-RA vs. ExPASy TrEMBL
Match: A0A6J1KJE4 (PITH domain-containing protein At3g04780-like OS=Cucurbita maxima OX=3661 GN=LOC111493734 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 9.6e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL
Sbjct: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. ExPASy TrEMBL
Match: A0A6J1G4V6 (PITH domain-containing protein At3g04780-like OS=Cucurbita moschata OX=3662 GN=LOC111450832 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 9.6e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL
Sbjct: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. ExPASy TrEMBL
Match: A0A6J1FBX4 (PITH domain-containing protein At3g04780-like OS=Cucurbita moschata OX=3662 GN=LOC111444016 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.3e-93
Identity = 171/176 (97.16%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASATAIHRNQVDLSDFINWSG+ECLNQNFSHTFTNAL+QTCRDNDSLLLESDADEQ+
Sbjct: 1   MAAASATAIHRNQVDLSDFINWSGIECLNQNFSHTFTNALSQTCRDNDSLLLESDADEQI 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           L+YIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LMYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSGAD TKVQKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADTTKVQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. ExPASy TrEMBL
Match: A0A5D3D4D2 (PITH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001340 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.0e-93
Identity = 171/176 (97.16%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASATAI+RNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL
Sbjct: 1   MAAASATAINRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           LIYIPFNQV+KLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LIYIPFNQVVKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSG D TK+QKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGTDTTKIQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. ExPASy TrEMBL
Match: A0A1S3C1X8 (PITH domain-containing protein At3g04780 OS=Cucumis melo OX=3656 GN=LOC103495923 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.0e-93
Identity = 171/176 (97.16%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           MAAASATAI+RNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL
Sbjct: 1   MAAASATAINRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           LIYIPFNQV+KLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG
Sbjct: 61  LIYIPFNQVVKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KPEVVKYVKFQNVRSLTIFIEDNQSG D TK+QKIALYGTTVETTDMKGLKKIEDH
Sbjct: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGTDTTKIQKIALYGTTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. TAIR 10
Match: AT3G04780.1 (Protein of unknown function (DUF1000) )

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-72
Identity = 134/176 (76.14%), Postives = 152/176 (86.36%), Query Frame = 0


Query: 1   MAAASATAIHRNQVDLSDFINWSGVECLNQNFSHTFTNALNQTCRDNDSLLLESDADEQL 60
           M+A SA+ I + QVDL DFI+WSGVECLNQ+ SH+  NAL Q  R+++ L LESDADEQL
Sbjct: 1   MSAESASQIPKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQL 60

Query: 61  LIYIPFNQVIKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTG 120
           LIYIPFNQVIKLHS  IKGPEEEGP+TVK FSNKE+M F NVND+PPSDT  L+ +NL G
Sbjct: 61  LIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKG 120

Query: 121 KPEVVKYVKFQNVRSLTIFIEDNQSGADVTKVQKIALYGTTVETTDMKGLKKIEDH 177
           KP V+KYVKFQNVRSLTIFIE NQSG++VTKVQKIALYG+TVETTDMKGLKKIEDH
Sbjct: 121 KPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGSTVETTDMKGLKKIEDH 176

[Close]

BLAST of Carg23444-RA vs. TAIR 10
Match: AT2G25950.1 (Protein of unknown function (DUF1000) )

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 43/154 (27.92%), Postives = 78/154 (50.65%), Query Frame = 0


Query: 20  INWSGVECLNQNFS---HTFTNALNQTCRDNDSLLLESDADEQLLIYIPFNQVIKLHSL- 79
           I+ S V  LN++ S    +   A  Q    +   L  ++ D +LL+++PF   +K+ S+ 
Sbjct: 24  IDLSKVSALNESVSGSAKSVFKAWEQRLHSSGEHLESNEGDPELLVFVPFTSDVKIKSIS 83

Query: 80  VIKGPEEEGPRTVKLFSNKENMGFGNVNDYPPSDTIVLSPDNLTGKPEV-VKYVKFQNVR 139
           ++ GPE   P  +++F N+E + F +           L+ +NL G  E   +Y KFQ+V 
Sbjct: 84  IVGGPEGTSPSKLRVFINREGIDFSDAESMQAVQEWELA-ENLQGVLEYQTRYSKFQSVG 143

Query: 140 SLTIFIEDNQSGADVTKVQKIALYGTTVETTDMK 169
           ++T+   ++  G D T+++ I   G   E T +K
Sbjct: 144 NITLHFPES-FGGDTTQIRYIGFKG---EATQLK 172

The following BLAST results are available for this feature:

BLAST of Carg23444-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946891.1	2.0e-94	100.00	PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_022946892...	[more]
XP_038891254.1	2.2e-93	98.30	PITH domain-containing protein At3g04780 [Benincasa hispida]	[more]
XP_022937687.1	1.1e-92	97.16	PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_023521129...	[more]
XP_008455826.1	1.9e-92	97.16	PREDICTED: PITH domain-containing protein At3g04780 [Cucumis melo] >KAA0063617.1...	[more]
XP_022965977.1	1.2e-91	96.59	PITH domain-containing protein At3g04780-like [Cucurbita maxima]	[more]

BLAST of Carg23444-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQZ9	2.5e-71	76.14	PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana OX=3702 GN=At3g...	[more]
O43396	6.3e-27	39.41	Thioredoxin-like protein 1 OS=Homo sapiens OX=9606 GN=TXNL1 PE=1 SV=3	[more]
Q920J4	3.1e-26	38.82	Thioredoxin-like protein 1 OS=Rattus norvegicus OX=10116 GN=Txnl1 PE=1 SV=3	[more]
Q8CDN6	5.4e-26	38.69	Thioredoxin-like protein 1 OS=Mus musculus OX=10090 GN=Txnl1 PE=1 SV=3	[more]
Q9USR1	6.1e-22	35.96	Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...	[more]

BLAST of Carg23444-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJE4	9.6e-95	100.00	PITH domain-containing protein At3g04780-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1G4V6	9.6e-95	100.00	PITH domain-containing protein At3g04780-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1FBX4	5.3e-93	97.16	PITH domain-containing protein At3g04780-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3D4D2	9.0e-93	97.16	PITH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3C1X8	9.0e-93	97.16	PITH domain-containing protein At3g04780 OS=Cucumis melo OX=3656 GN=LOC103495923...	[more]

BLAST of Carg23444-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04780.1	1.7e-72	76.14	Protein of unknown function (DUF1000)	[more]
AT2G25950.1	2.1e-09	27.92	Protein of unknown function (DUF1000)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037047	PITH domain superfamily	GENE3D	2.60.120.470	PITH domain	coord: 5..176 e-value: 3.8E-54 score: 184.8
IPR010400	PITH domain	PFAM	PF06201	PITH	coord: 16..160 e-value: 1.4E-38 score: 132.4
IPR010400	PITH domain	PROSITE	PS51532	PITH	coord: 5..176 score: 52.846024
None	No IPR available	PANTHER	PTHR12175:SF5	THIOREDOXIN LIKE 1	coord: 3..176
IPR045099	PITH domain-containing protein 1-like	PANTHER	PTHR12175	AD039 HT014 THIOREDOXIN FAMILY TRP26	coord: 3..176
IPR008979	Galactose-binding-like domain superfamily	SUPERFAMILY	49785	Galactose-binding domain-like	coord: 7..160

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23444	Carg23444	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23444-RA:1	Carg23444-RA:1	exon
Carg23444-RA:2	Carg23444-RA:2	exon
Carg23444-RA:3	Carg23444-RA:3	exon
Carg23444-RA:4	Carg23444-RA:4	exon
Carg23444-RA:5	Carg23444-RA:5	exon
Carg23444-RA:6	Carg23444-RA:6	exon
Carg23444-RA:7	Carg23444-RA:7	exon
Carg23444-RA:8	Carg23444-RA:8	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23444-RA:five_prime_utr	Carg23444-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23444-RA:cds	Carg23444-RA:cds	CDS
Carg23444-RA:cds	Carg23444-RA:cds_2	CDS
Carg23444-RA:cds	Carg23444-RA:cds_3	CDS
Carg23444-RA:cds	Carg23444-RA:cds_4	CDS
Carg23444-RA:cds	Carg23444-RA:cds_5	CDS
Carg23444-RA:cds	Carg23444-RA:cds_6	CDS
Carg23444-RA:cds	Carg23444-RA:cds_7	CDS
Carg23444-RA:cds	Carg23444-RA:cds_8	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23444-RA:three_prime_utr	Carg23444-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23444-RA	Carg23444-RA-protein	polypeptide