Carg23287-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23287-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	dormancy-associated protein homolog 3 isoform X2
Location	Carg_Chr12: 10092862 .. 10095665 (+)
Sequence length	1193
RNA-Seq Expression	Carg23287-RA
Synteny	Carg23287-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTCCCCACTGCCGCTTCTAAGCTCTTCAATATCGAGAACCGCCGCTTTCTCCGCTTCCTCCGCCGTGACGGAACTTTAGCCGTTTCTTCTCTTCTTCTTCGATTTCCTGTTCATTATGGGCTTACTTGACCAGCTTTGGGACGATACCGTCGCTGGACCCCGGCCAGATAGTGGCCTTGGCAAGCTTCGTAAACACTCCACGTTTACCGGGCGAAATAGCTCCGGCAGCAAGGGTACGCTATGGATATTTTTATTCCACTGCTTGCCATAGCGAACACGTCGTCGAACTCGATAAACTTCAACTTGAAACCCTAATTTTAAGCTCAATAACGGAATATTGAGTATTCGATTGATTTTTCTAGGTTAAAAGTGGTTTAAACTGTAGGCTGATGATCGAATTGAGATTCTATTTTTTTTTTTAAATTTCTTAATAAAAACCTACCGTTGATTTTGCTTGAGAAATAGCCAGCAGCTCGGATTTGTCTCGCAATTTGACAGGATCTGTACCTTTGAACTGAAAAAGATGCTCAATCGATACCTTGAACTTCATAAAATCATAGTTTCTGTGTTGACTATTCTTTTTTCTTGATTTTTTATTGAACTCTTTTTGGATCAGAGCTCGATGGCGGCAGCGCGAGATCGTACGGCGAAGAATCTTCACAATCGTCGGTGAGGATCACGAGGAGTATCATGATACTAAGGCCGCCAGGGTACCAGTCTGGTTCGCCGCCTATTTCACCGGCTGGATCTAGTTCTCCGGCATCGCCTTTTTCTGGTAAGTAACAGAGACGTCTTTTTTGCACTTTCCTCTTTATGCGAAATTACCAATATGCCCTTCATGTAGAAGCCAAATGCACTTTTATCTTTCAATACAAGTTGGAATAAAATTACACGAGGGGGGGTTTTTTGTCCTTTGGTTATGGCGTCGCCTTCATGATTGGACAGGCACAGAAAACGGTAGTTGTATTTGGTGAAAAGATATGGTTCTAATTAAACCTGGATTGAAGAGCATCCTTCCATTGAAAGTGCTTCTGTTCGTTTAAATTCGATTGCCATTGAATATTTAATCCATTGACCCACCGTATTTATGGGGTTTCATTAGCAGTTTTCAGTTCAATCGTTTTCAAATTCATTGCATACTTCTCTTCTTGTGGACATAGTTATAGACTATTCTCCTGTTTTGTGGAGGTTGTTTGCCTTGCTCGTTGGTTGGCAGATCTTTGTCAAACAAGTAGAAGTATTTCGTGTGGTTCTGCTGATTTCTCATAAAAAGTTAAATGAAATAGGTGGGAATTGTGGTTTGGTTTGAAAACGTCGAGCTTACTTCATAAACATTCATGGTGGTCAAAGAAAAAATCTGGATCTTGTGAAATCATCATTGCAAACTTAATGTTCATTGTTTCTCTGTTTCAAAACCCTTGCTGCTTAAGTTTTTGCTCTGATGGGTTGAGTTGAACGTTACTAAAATCATTTAGAAATACCAATTTGAGTATAGCTTAACTACTTAATCTTGAGGATTGTTGGGAGAGGAGTCCCATATTGGCTAATTAAGGGGTTGATTGTGGATTTATAAGTAAGGAACTTTGTCTTCATTGGTATGATGCCTTTTGAGAAAACCAAAAGTAAAATCACGAGAGCTTATGCTCAAAGTGGACAATATCATGCCATTGCGAAGCCTCGTATGTATCATTGTTGAACTAAAGAAGGATTGTTTAGAAATCGATTAGCAATAGAAAACTCTCACTAGAACGTTGTTTTGCTGTTGGGTTTGATGTTTCAAAGCTTGTTTTTAGTGGTCTTTTCCTGGATCGTTCGTCTTTCATATCGAAAATTGATTTAATCCGTTCTTGTTTCCTATGTCTCTGATTTCCATACCTCATAAATTGTATCATGAAACTGTAAATTCATTAGTAATCGATGCATATACTAATTCTTGATTTCCCATCTCTTAGTATCATCTTTCAACTTTGTGTTTATTTATAAGTAATTTCTCCCTTTTGGAGGTAGGGAGTCCTTCCGGTTTCGAAGAAGGTCGATCTCCGACACATACACAAAGGCAACCGATAGTGGACCCGGGAGCCCTTCTTCTCCTCACAACATGTGAGATCTAATAAGCTGAGCTCTCTTATTCCCTTTCAACAATGTTCTCCAAAACCTTCATATATTCGTGTAATCTTAGTGTATCGTAACGTGGCTGTAGTAGTATGCATGTGAATTCCGTATGAAGGGTATTAGAATAAGTCTTGTAGGAGGAAGAAGAAGCTAAAATCGAGGGAGATTATGGTAATTTCGAGTACGTAGACGAGGGTACTATTGTAAATTAGGTATCAATGTTGTTGGTTTTGTTAGTGGAATGTAAAAGGGAAGTTGTTCTTTTCATGTGGACCTTATCACTGATTGATTGATTCTCTTTGGTTTTCCATTGGACAGTGCTTTGGTTAATGCAAGACAGCCCTGTTTTCTTTGAATGGTTGCTACAAAGCACCAAATCAATGGCCTTGGACAGATGCTCTTTTCAGGTTTTAATGCCATTCCTTCAAGTGTTTTGCTTTTGGATTCTGTTAGGCCTTGGATTTAATTAAGTAAAAGTTGGGTGGTGGGCTAGTTCTTTATTAGTGAATGTTCGTGTCACCTCCGACCTTCCATGAACGTTTTAGAACGATACTTAAAGTAGAAATGCATTAGAGTATTAGAAGAAAAATTGACATAATAATGGCCAGAAAGTCTGAACGAATGATATTTAGTGTAATAGTCTAAGTCCACCGCTAGCGGATATTGTTCACTTTAGGTTTTTTCTTATA

mRNA sequence

ATCTTCCCCACTGCCGCTTCTAAGCTCTTCAATATCGAGAACCGCCGCTTTCTCCGCTTCCTCCGCCGTGACGGAACTTTAGCCGTTTCTTCTCTTCTTCTTCGATTTCCTGTTCATTATGGGCTTACTTGACCAGCTTTGGGACGATACCGTCGCTGGACCCCGGCCAGATAGTGGCCTTGGCAAGCTTCGTAAACACTCCACGTTTACCGGGCGAAATAGCTCCGGCAGCAAGGAGCTCGATGGCGGCAGCGCGAGATCGTACGGCGAAGAATCTTCACAATCGTCGGTGAGGATCACGAGGAGTATCATGATACTAAGGCCGCCAGGGTACCAGTCTGGTTCGCCGCCTATTTCACCGGCTGGATCTAGTTCTCCGGCATCGCCTTTTTCTGGTAGGGAGTCCTTCCGGTTTCGAAGAAGGTCGATCTCCGACACATACACAAAGGCAACCGATAGTGGACCCGGGAGCCCTTCTTCTCCTCACAACATGTGAGATCTAATAAGCTGAGCTCTCTTATTCCCTTTCAACAATGTTCTCCAAAACCTTCATATATTCGTGTAATCTTAGTGTATCGTAACGTGGCTGTAGTAGTATGCATGTGAATTCCGTATGAAGGGTATTAGAATAAGTCTTGTAGGAGGAAGAAGAAGCTAAAATCGAGGGAGATTATGGTAATTTCGAGTACGTAGACGAGGGTACTATTGTAAATTAGGTATCAATGTTGTTGGTTTTGTTAGTGGAATGTAAAAGGGAAGTTGTTCTTTTCATGTGGACCTTATCACTGATTGATTGATTCTCTTTGGTTTTCCATTGGACAGTGCTTTGGTTAATGCAAGACAGCCCTGTTTTCTTTGAATGGTTGCTACAAAGCACCAAATCAATGGCCTTGGACAGATGCTCTTTTCAGGTTTTAATGCCATTCCTTCAAGTGTTTTGCTTTTGGATTCTGTTAGGCCTTGGATTTAATTAAGTAAAAGTTGGGTGGTGGGCTAGTTCTTTATTAGTGAATGTTCGTGTCACCTCCGACCTTCCATGAACGTTTTAGAACGATACTTAAAGTAGAAATGCATTAGAGTATTAGAAGAAAAATTGACATAATAATGGCCAGAAAGTCTGAACGAATGATATTTAGTGTAATAGTCTAAGTCCACCGCTAGCGGATATTGTTCACTTTAGGTTTTTTCTTATA

Coding sequence (CDS)

ATGGGCTTACTTGACCAGCTTTGGGACGATACCGTCGCTGGACCCCGGCCAGATAGTGGCCTTGGCAAGCTTCGTAAACACTCCACGTTTACCGGGCGAAATAGCTCCGGCAGCAAGGAGCTCGATGGCGGCAGCGCGAGATCGTACGGCGAAGAATCTTCACAATCGTCGGTGAGGATCACGAGGAGTATCATGATACTAAGGCCGCCAGGGTACCAGTCTGGTTCGCCGCCTATTTCACCGGCTGGATCTAGTTCTCCGGCATCGCCTTTTTCTGGTAGGGAGTCCTTCCGGTTTCGAAGAAGGTCGATCTCCGACACATACACAAAGGCAACCGATAGTGGACCCGGGAGCCCTTCTTCTCCTCACAACATGTGA

Protein sequence

MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRITRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPSSPHNM

Homology

[Close]

BLAST of Carg23287-RA vs. NCBI nr
Match: XP_022937952.1 (dormancy-associated protein homolog 3 isoform X2 [Cucurbita moschata] >KAG7021078.1 Dormancy-associated protein-like 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.4 bits (625), Expect = 2.7e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI
Sbjct: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS
Sbjct: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]

BLAST of Carg23287-RA vs. NCBI nr
Match: XP_023537709.1 (dormancy-associated protein homolog 3 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.8 bits (621), Expect = 7.8e-61
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPDSGLGKLRKHSTF+GRNSSGSKELDGGSARSYGEESSQSSVRI
Sbjct: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFSGRNSSGSKELDGGSARSYGEESSQSSVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS
Sbjct: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]

BLAST of Carg23287-RA vs. NCBI nr
Match: XP_022966007.1 (dormancy-associated protein homolog 3 isoform X2 [Cucurbita maxima])

HSP 1 Score: 241.9 bits (616), Expect = 3.0e-60
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPDSGLGKLRKHSTF+GRNSSGSKELDGGSARSYGEESSQSSVRI
Sbjct: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFSGRNSSGSKELDGGSARSYGEESSQSSVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMILRPPGYQ GSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS
Sbjct: 61  TRSIMILRPPGYQCGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]

BLAST of Carg23287-RA vs. NCBI nr
Match: XP_038877720.1 (dormancy-associated protein homolog 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-53
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRP+SGLGKLRKHSTF+ R SSG+KELDGGSARSYGE+SS+S VRI
Sbjct: 1   MGLLDQLWDDTVAGPRPESGLGKLRKHSTFSSRPSSGNKELDGGSARSYGEDSSESPVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMI+RPPGYQ+GSPPISPAGSSSPASPFSGRESFRFRRRSIS+ Y KATD G GSPS
Sbjct: 61  TRSIMIVRPPGYQNGSPPISPAGSSSPASPFSGRESFRFRRRSISEVYAKATDGGSGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]

BLAST of Carg23287-RA vs. NCBI nr
Match: XP_008454082.1 (PREDICTED: dormancy-associated protein homolog 3 isoform X2 [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 4.6e-53
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLL+QLWDDTVAGPRP+SGLGKLRKHST +GR SSGSKELDGGSARSYGE+SS+S VRI
Sbjct: 1   MGLLEQLWDDTVAGPRPESGLGKLRKHSTSSGRPSSGSKELDGGSARSYGEDSSESPVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMI+RPPGYQ+GSPPISPAGSSSPASPFSGRESFRFRRRSIS+ YTK TD G GSPS
Sbjct: 61  TRSIMIVRPPGYQNGSPPISPAGSSSPASPFSGRESFRFRRRSISELYTKTTDGGSGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]

BLAST of Carg23287-RA vs. ExPASy Swiss-Prot
Match: Q8LD26 (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g56220 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.8e-34
Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEES-SQSSVR 60
           MGLLD LWDDTVAGPRP++GLGKLRKH TF+ R SSG+ + + GSARSYGE+S  + +V+
Sbjct: 1   MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 61  ITRSIMILRPPGYQSGSPPISPAGSSSPASPFS--------GRESFRFRRRSISDTYTKA 120
           +TRSIMI++PPGYQ  S P SPAGS+ P SPFS        G+E FRFRRRS SD + KA
Sbjct: 61  VTRSIMIIKPPGYQGSSAPASPAGSTPPLSPFSPPLSPFSGGKEPFRFRRRSTSDAFEKA 120

Query: 121 ---TDSGPGSPSSPHNM 126
              +++GP S    + M
Sbjct: 121 AGGSETGPRSSPPTYGM 137

[Close]

BLAST of Carg23287-RA vs. ExPASy Swiss-Prot
Match: F4HV65 (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.8e-07
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
          MG L +LWD+TVAGP PD+GLGKLRKH + +   SS                 S SS ++
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSS---------------PPSLSSDQV 60

Query: 61 TRSIMILRPPGYQSG------SPPISPAGSSSPASPFS 93
          TRSIM+ +      G       P      SS+P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

[Close]

BLAST of Carg23287-RA vs. ExPASy Swiss-Prot
Match: Q05349 (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa OX=3747 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.1e-04
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRK 27
          M LLD+LWDD VAGP+P+ GLG LRK
Sbjct: 1  MVLLDKLWDDIVAGPQPERGLGMLRK 26

[Close]

BLAST of Carg23287-RA vs. ExPASy TrEMBL
Match: A0A6J1FCM7 (dormancy-associated protein homolog 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444188 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI
Sbjct: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS
Sbjct: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]

BLAST of Carg23287-RA vs. ExPASy TrEMBL
Match: A0A6J1HLV1 (dormancy-associated protein homolog 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465724 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPDSGLGKLRKHSTF+GRNSSGSKELDGGSARSYGEESSQSSVRI
Sbjct: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFSGRNSSGSKELDGGSARSYGEESSQSSVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMILRPPGYQ GSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS
Sbjct: 61  TRSIMILRPPGYQCGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]

BLAST of Carg23287-RA vs. ExPASy TrEMBL
Match: A0A1S3BYJ7 (dormancy-associated protein homolog 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494595 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.2e-53
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLL+QLWDDTVAGPRP+SGLGKLRKHST +GR SSGSKELDGGSARSYGE+SS+S VRI
Sbjct: 1   MGLLEQLWDDTVAGPRPESGLGKLRKHSTSSGRPSSGSKELDGGSARSYGEDSSESPVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMI+RPPGYQ+GSPPISPAGSSSPASPFSGRESFRFRRRSIS+ YTK TD G GSPS
Sbjct: 61  TRSIMIVRPPGYQNGSPPISPAGSSSPASPFSGRESFRFRRRSISELYTKTTDGGSGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]

BLAST of Carg23287-RA vs. ExPASy TrEMBL
Match: A0A0A0LFX2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031190 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 107/125 (85.60%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDT+AGPRP+SGLGKLRKHSTF+GR +SG+KELDGG ARSYGE+SS+S VRI
Sbjct: 1   MGLLDQLWDDTLAGPRPESGLGKLRKHSTFSGRPTSGNKELDGGRARSYGEDSSESPVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMI+RPPGYQ+GSPPISPAGSSSPASPFSGRESFRFRRRSIS+ YTK T+ G GSPS
Sbjct: 61  TRSIMIVRPPGYQNGSPPISPAGSSSPASPFSGRESFRFRRRSISEVYTKTTNGGSGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]

BLAST of Carg23287-RA vs. ExPASy TrEMBL
Match: A0A6J1D9H4 (dormancy-associated protein homolog 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018856 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.3e-49
Identity = 104/125 (83.20%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLD LWDDTVAGPRP+SGLGKLRKHSTF GR+SSG KELDGG+ARSYG+ESS+S +RI
Sbjct: 1   MGLLDHLWDDTVAGPRPESGLGKLRKHSTFPGRSSSG-KELDGGNARSYGDESSESPMRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMI++PPGYQ  SPPISPAGS+SPASPFSGRESFRFRRRS SD Y KAT+ GPGS S
Sbjct: 61  TRSIMIVKPPGYQFSSPPISPAGSNSPASPFSGRESFRFRRRSTSDGYEKATEGGPGSSS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 124

[Close]

BLAST of Carg23287-RA vs. TAIR 10
Match: AT1G56220.1 (Dormancy/auxin associated family protein )

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-35
Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEES-SQSSVR 60
           MGLLD LWDDTVAGPRP++GLGKLRKH TF+ R SSG+ + + GSARSYGE+S  + +V+
Sbjct: 1   MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 61  ITRSIMILRPPGYQSGSPPISPAGSSSPASPFS--------GRESFRFRRRSISDTYTKA 120
           +TRSIMI++PPGYQ  S P SPAGS+ P SPFS        G+E FRFRRRS SD + KA
Sbjct: 61  VTRSIMIIKPPGYQGSSAPASPAGSTPPLSPFSPPLSPFSGGKEPFRFRRRSTSDAFEKA 120

Query: 121 ---TDSGPGSPSSPHNM 126
              +++GP S    + M
Sbjct: 121 AGGSETGPRSSPPTYGM 137

[Close]

BLAST of Carg23287-RA vs. TAIR 10
Match: AT1G56220.3 (Dormancy/auxin associated family protein )

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-35
Identity = 80/140 (57.14%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEES-SQSSVR 60
           MGLLD LWDDTVAGPRP++GLGKLRKH TF+ R SSG+ + + GSARSYGE+S  + +V+
Sbjct: 1   MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 61  ITRSIMILRPPGYQSGSPPISPAGSSSPASPFS-----------GRESFRFRRRSISDTY 120
           +TRSIMI++PPGYQ  S P SPAGS+ P SPFS           G+E FRFRRRS SD +
Sbjct: 61  VTRSIMIIKPPGYQGSSAPASPAGSTPPLSPFSPPLSPFSANAGGKEPFRFRRRSTSDAF 120

Query: 121 TKA---TDSGPGSPSSPHNM 126
            KA   +++GP S    + M
Sbjct: 121 EKAAGGSETGPRSSPPTYGM 140

[Close]

BLAST of Carg23287-RA vs. TAIR 10
Match: AT1G56220.2 (Dormancy/auxin associated family protein )

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-29
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEES-SQSSVR 60
          MGLLD LWDDTVAGPRP++GLGKLRKH TF+ R SSG+ + + GSARSYGE+S  + +V+
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 61 ITRSIMILRPPGYQSGSPPISPAGSSSPASPFS 93
          +TRSIMI++PPGYQ  S P SPAGS+ P SPFS
Sbjct: 61 VTRSIMIIKPPGYQGSSAPASPAGSTPPLSPFS 93

[Close]

BLAST of Carg23287-RA vs. TAIR 10
Match: AT1G56220.4 (Dormancy/auxin associated family protein )

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-29
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEES-SQSSVR 60
          MGLLD LWDDTVAGPRP++GLGKLRKH TF+ R SSG+ + + GSARSYGE+S  + +V+
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 61 ITRSIMILRPPGYQSGSPPISPAGSSSPASPFS 93
          +TRSIMI++PPGYQ  S P SPAGS+ P SPFS
Sbjct: 61 VTRSIMIIKPPGYQGSSAPASPAGSTPPLSPFS 93

[Close]

BLAST of Carg23287-RA vs. TAIR 10
Match: AT1G54070.1 (Dormancy/auxin associated family protein )

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-08
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
          MG L +LWD+TVAGP PD+GLGKLRKH + +   SS                 S SS ++
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSS---------------PPSLSSDQV 60

Query: 61 TRSIMILRPPGYQSG------SPPISPAGSSSPASPFS 93
          TRSIM+ +      G       P      SS+P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

The following BLAST results are available for this feature:

BLAST of Carg23287-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937952.1	2.7e-61	100.00	dormancy-associated protein homolog 3 isoform X2 [Cucurbita moschata] >KAG702107...	[more]
XP_023537709.1	7.8e-61	99.20	dormancy-associated protein homolog 3 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022966007.1	3.0e-60	98.40	dormancy-associated protein homolog 3 isoform X2 [Cucurbita maxima]	[more]
XP_038877720.1	2.1e-53	88.00	dormancy-associated protein homolog 3-like isoform X1 [Benincasa hispida]	[more]
XP_008454082.1	4.6e-53	88.00	PREDICTED: dormancy-associated protein homolog 3 isoform X2 [Cucumis melo]	[more]

BLAST of Carg23287-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LD26	3.8e-34	58.39	Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g562...	[more]
F4HV65	8.8e-07	37.76	Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g540...	[more]
Q05349	9.1e-04	73.08	Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa OX=3747 PE=2 SV=1	[more]

BLAST of Carg23287-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCM7	1.3e-61	100.00	dormancy-associated protein homolog 3 isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1HLV1	1.4e-60	98.40	dormancy-associated protein homolog 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S3BYJ7	2.2e-53	88.00	dormancy-associated protein homolog 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LFX2	1.1e-52	85.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031190 PE=3 SV=1	[more]
A0A6J1D9H4	3.3e-49	83.20	dormancy-associated protein homolog 3 isoform X2 OS=Momordica charantia OX=3673 ...	[more]

BLAST of Carg23287-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56220.1	2.7e-35	58.39	Dormancy/auxin associated family protein	[more]
AT1G56220.3	6.0e-35	57.14	Dormancy/auxin associated family protein	[more]
AT1G56220.2	2.2e-29	67.74	Dormancy/auxin associated family protein	[more]
AT1G56220.4	2.2e-29	67.74	Dormancy/auxin associated family protein	[more]
AT1G54070.1	6.3e-08	37.76	Dormancy/auxin associated family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008406	Dormancy/auxin associated protein	PFAM	PF05564	Auxin_repressed	coord: 7..90 e-value: 5.1E-10 score: 40.1
IPR008406	Dormancy/auxin associated protein	PANTHER	PTHR33565	DORMANCY-ASSOCIATED PROTEIN 1	coord: 1..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..92
None	No IPR available	PANTHER	PTHR33565:SF1	DORMANCY-ASSOCIATED PROTEIN HOMOLOG 3	coord: 1..123

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23287	Carg23287	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23287-RA:1	Carg23287-RA:1	exon
Carg23287-RA:2	Carg23287-RA:2	exon
Carg23287-RA:3	Carg23287-RA:3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23287-RA:five_prime_utr	Carg23287-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23287-RA:cds	Carg23287-RA:cds	CDS
Carg23287-RA:cds	Carg23287-RA:cds_2	CDS
Carg23287-RA:cds	Carg23287-RA:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23287-RA:three_prime_utr	Carg23287-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23287-RA	Carg23287-RA-protein	polypeptide