Carg21923-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21923-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	G protein gamma domain-containing protein
Location	Carg_Chr11: 3348074 .. 3349823 (-)
Sequence length	869
RNA-Seq Expression	Carg21923-RA
Synteny	Carg21923-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCGGTCTGTTTACTCTTCATCAGTGCCTTCGCTGCCACCACCTTGTCCAAAGTCTCCACCGGAGTACCCGGATTTGTATGGGAAGCGTCGGGAAATAGCCAAGATTCATATGCTTGAAAGAGAAATTGGTATTCTTGAGGTTTGTTCGAATTTGAGTTGATTGTTACTATCTTCATATTCTGACACTTATAGTTCAATTGCAAGCATTTCTCTTTTTTGTCATTAGCTTTGCTAAGTAGGCACGGAATTTTTCAGTTCTACATGCAGATCTGTTTGCTTGATTTTAGGAGCTAGTTTCTCATTGCAGTTCTAAAACAGATTCGATAAGCCTAGAACTTCCATTTCATGGCATGAAATTTCTCCCAGACCTTCATGGAAAAGCACCACCTGGGAAGTCTCTGGGATAGGAAAATCCAAGAAAAAATTTCGGCTTCTAAATTTCTTGGGCTGCCTTTTCCCCAAAGCCAGGGGAATGAAAGACACAAGAATTCAATCTCTATCCCACTAAAATCCATGGAATTTGAAAATTAATGGACTCGTTGTCTCTCCTTTCTGTTTACCAGATAAAAGCATATTTCTTCCGCACTAATTATCTCCTCCTGTTATGGGATCGTTTAGCTGGACAAATGCCACATGTTACACGAAAAATTGAAATTAAATACAATGTTCACACATGTCATGAGGCACAATTCCCGATTTCAAATTAGCAATGATTGTTTTATTATTAGCTCAATGCGTCGTTACATTTTTCTAGTTTTCTTGAAACAGGACGAACTAAAATCTGTTGAAAGTCTCCAACCCGTCTCTACATGCTGCAAAGAGTATGGTTCTTCTTAATAAGTTTCATCATCTTGTAATTTATTGAAGTTCTGATGTCTTTCTTCCGTTAATTGAACCCATCCAATCGGGAGACTGATCCATCCAGTCTTTTGCAGGATTAGCGACTTTGTTACGGTCAACTCAGATCCATTGACGCCTACGTAAGACTTCCTTTTTAATTAAACTAACCTGCATAATTTTAAGGTTGCATCAGTTATGAACAATGCCCCTTTTTTTTTCAAGCAGATGTAGGACAAAACATAAGCGATGCCGCTTCTGGAAGTGGTTATGGTTAGAACTTTCAACATATGAAATCTGATTTTAGCTCATCACTGATTACGTTTTTTTGTATAACATTTGTTACGATTGTATGCAGCGGATTTCCTTGCTTTAATTTGTCATGGCTGTGCTGCTGCTCTTGCACTGGATGCTCTGTCTCCCTTGAGGTGCCTCGCTCCTGTGTTTGCAAACCATGCAACTTCCCATCATGTTCAAACTGCTGTAATAAGCCGAAGTGTAGTTTCTTCTCCTGTCCCTCTTCATTTTGCTGTAGAAACATCTCGTGCCGTAGATGGTGTTGCATTTTGTCATTACCTTCGATCTCATGCTCCGATGGCTGCTGCTGCTGCAAATGCAAATGCAGCTGTAAGTGCTCTTTTCCAAAATGTTCACAGGTACCTTCTTGTCGCTTCTGTACAAAATCCTGTTGTGACCCTTGCTCTTTATGTTGTTGGTTTTGACCCCTGCTCGCTTCTGATATAATCAATGTACATTATTATGAATATATTCTACTTTTTATTGATTTTGTCCATATTTATTAGTGGGAATACGATTGGTATGCCTTTTAAATTATTTAAGACAATATTTTGAGTTGTTTAATCAGGGTCCTACTGCTGGATTATTGATGGGTATCATTAGAACTG

mRNA sequence

ATGGCTGCTCGGTCTGTTTACTCTTCATCAGTGCCTTCGCTGCCACCACCTTGTCCAAAGTCTCCACCGGAGTACCCGGATTTGTATGGGAAGCGTCGGGAAATAGCCAAGATTCATATGCTTGAAAGAGAAATTGGTATTCTTGAGGACGAACTAAAATCTGTTGAAAGTCTCCAACCCGTCTCTACATGCTGCAAAGAGATTAGCGACTTTGTTACGGTCAACTCAGATCCATTGACGCCTACTTATGAACAATGCCCCTTTTTTTTTCAAGCAGATGTAGGACAAAACATAAGCGATGCCGCTTCTGGAAGTGGTTATGCGGATTTCCTTGCTTTAATTTGTCATGGCTGTGCTGCTGCTCTTGCACTGGATGCTCTGTCTCCCTTGAGGTGCCTCGCTCCTGTGTTTGCAAACCATGCAACTTCCCATCATGTTCAAACTGCTGTAATAAGCCGAAGTGTAGTTTCTTCTCCTGTCCCTCTTCATTTTGCTGTAGAAACATCTCGTGCCGTAGATGGTGTTGCATTTTGTCATTACCTTCGATCTCATGCTCCGATGGCTGCTGCTGCTGCAAATGCAAATGCAGCTGTAAGTGCTCTTTTCCAAAATGTTCACAGGTACCTTCTTGTCGCTTCTGTACAAAATCCTGTTGTGACCCTTGCTCTTTATGTTGTTGGTTTTGACCCCTGCTCGCTTCTGATATAATCAATGTACATTATTATGAATATATTCTACTTTTTATTGATTTTGTCCATATTTATTAGTGGGAATACGATTGGTATGCCTTTTAAATTATTTAAGACAATATTTTGAGTTGTTTAATCAGGGTCCTACTGCTGGATTATTGATGGGTATCATTAGAACTG

Coding sequence (CDS)

ATGGCTGCTCGGTCTGTTTACTCTTCATCAGTGCCTTCGCTGCCACCACCTTGTCCAAAGTCTCCACCGGAGTACCCGGATTTGTATGGGAAGCGTCGGGAAATAGCCAAGATTCATATGCTTGAAAGAGAAATTGGTATTCTTGAGGACGAACTAAAATCTGTTGAAAGTCTCCAACCCGTCTCTACATGCTGCAAAGAGATTAGCGACTTTGTTACGGTCAACTCAGATCCATTGACGCCTACTTATGAACAATGCCCCTTTTTTTTTCAAGCAGATGTAGGACAAAACATAAGCGATGCCGCTTCTGGAAGTGGTTATGCGGATTTCCTTGCTTTAATTTGTCATGGCTGTGCTGCTGCTCTTGCACTGGATGCTCTGTCTCCCTTGAGGTGCCTCGCTCCTGTGTTTGCAAACCATGCAACTTCCCATCATGTTCAAACTGCTGTAATAAGCCGAAGTGTAGTTTCTTCTCCTGTCCCTCTTCATTTTGCTGTAGAAACATCTCGTGCCGTAGATGGTGTTGCATTTTGTCATTACCTTCGATCTCATGCTCCGATGGCTGCTGCTGCTGCAAATGCAAATGCAGCTGTAAGTGCTCTTTTCCAAAATGTTCACAGGTACCTTCTTGTCGCTTCTGTACAAAATCCTGTTGTGACCCTTGCTCTTTATGTTGTTGGTTTTGACCCCTGCTCGCTTCTGATATAA

Protein sequence

MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQPVSTCCKEISDFVTVNSDPLTPTYEQCPFFFQADVGQNISDAASGSGYADFLALICHGCAAALALDALSPLRCLAPVFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHYLRSHAPMAAAAANANAAVSALFQNVHRYLLVASVQNPVVTLALYVVGFDPCSLLI

Homology

[Close]

BLAST of Carg21923-RA vs. NCBI nr
Match: KAG7021974.1 (Guanine nucleotide-binding protein subunit gamma 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 458.4 bits (1178), Expect = 3.8e-125
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60
           MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP
Sbjct: 1   MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60

Query: 61  VSTCCKEISDFVTVNSDPLTPTYEQCPFFFQADVGQNISDAASGSGYADFLALICHGCAA 120
           VSTCCKEISDFVTVNSDPLTPTYEQCPFFFQADVGQNISDAASGSGYADFLALICHGCAA
Sbjct: 61  VSTCCKEISDFVTVNSDPLTPTYEQCPFFFQADVGQNISDAASGSGYADFLALICHGCAA 120

Query: 121 ALALDALSPLRCLAPVFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHY 180
           ALALDALSPLRCLAPVFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHY
Sbjct: 121 ALALDALSPLRCLAPVFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHY 180

Query: 181 LRSHAPMAAAAANANAAVSALFQNVHRYLLVASVQNPVVTLALYVVGFDPCSLLI 236
           LRSHAPMAAAAANANAAVSALFQNVHRYLLVASVQNPVVTLALYVVGFDPCSLLI
Sbjct: 181 LRSHAPMAAAAANANAAVSALFQNVHRYLLVASVQNPVVTLALYVVGFDPCSLLI 235

[Close]

BLAST of Carg21923-RA vs. NCBI nr
Match: KAG6588088.1 (hypothetical protein SDJN03_16653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 337.0 bits (863), Expect = 1.3e-88
Identity = 187/235 (79.57%), Postives = 187/235 (79.57%), Query Frame = 0


Query: 1   MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60
           MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREI               
Sbjct: 1   MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREI--------------- 60

Query: 61  VSTCCKEISDFVTVNSDPLTPTYEQCPFFFQADVGQNISDAASGSGYADFLALICHGCAA 120
                                           DVGQNISDAASGSGYADFLALICHGCAA
Sbjct: 61  --------------------------------DVGQNISDAASGSGYADFLALICHGCAA 120

Query: 121 ALALDALSPLRCLAPVFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHY 180
           ALALDALSPLRCLA VFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHY
Sbjct: 121 ALALDALSPLRCLAAVFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHY 180

Query: 181 LRSHAPMAAAAANANAAVSALFQNVHRYLLVASVQNPVVTLALYVVGFDPCSLLI 236
           LRSHAPMAAAAANANAAVSALFQNVHRYLLVASVQNPVVTLALYVVGFDPCSLLI
Sbjct: 181 LRSHAPMAAAAANANAAVSALFQNVHRYLLVASVQNPVVTLALYVVGFDPCSLLI 188

[Close]

BLAST of Carg21923-RA vs. NCBI nr
Match: XP_022933212.1 (guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita moschata] >XP_022933218.1 guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita moschata] >XP_022933223.1 guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 6.6e-37
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60
          MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP
Sbjct: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60

Query: 61 VSTCCKEISDFVTVNSDPLTPT----YEQCPFF 90
          VS CCKEISDFVTVNSDPLTPT    +++C F+
Sbjct: 61 VSICCKEISDFVTVNSDPLTPTCRTKHKRCRFW 93

[Close]

BLAST of Carg21923-RA vs. NCBI nr
Match: XP_023530602.1 (guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita pepo subsp. pepo] >XP_023530603.1 guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita pepo subsp. pepo] >XP_023530605.1 guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 6.6e-37
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60
          MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP
Sbjct: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60

Query: 61 VSTCCKEISDFVTVNSDPLTPT----YEQCPFF 90
          VS CCKEISDFVTVNSDPLTPT    +++C F+
Sbjct: 61 VSICCKEISDFVTVNSDPLTPTCRTKHKRCRFW 93

[Close]

BLAST of Carg21923-RA vs. NCBI nr
Match: XP_022968265.1 (guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita maxima] >XP_022968274.1 guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita maxima] >XP_022968283.1 guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita maxima])

HSP 1 Score: 162.2 bits (409), Expect = 5.6e-36
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60
          MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQ 
Sbjct: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQS 60

Query: 61 VSTCCKEISDFVTVNSDPLTPT----YEQCPFF 90
          VS CCKEISDFVTVNSDPLTPT    +++C F+
Sbjct: 61 VSICCKEISDFVTVNSDPLTPTCRTKHKRCRFW 93

[Close]

BLAST of Carg21923-RA vs. ExPASy Swiss-Prot
Match: Q6AWT8 (Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana OX=3702 GN=GG3 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-23
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 2  AARSVYSSSV--PSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQ 61
          AA  V SSS+   SLPPP PKSPPEYPDLYGKRRE A++ MLEREIG LE E+K +E +Q
Sbjct: 16 AAGGVSSSSLAPSSLPPPRPKSPPEYPDLYGKRREAARVQMLEREIGFLEGEIKFIEGVQ 75

Query: 62 PVSTCCKEISDFVTVNSDPLTP 82
          P S C KE+SDFV  NSDPL P
Sbjct: 76 PASRCIKEVSDFVVANSDPLIP 97

[Close]

BLAST of Carg21923-RA vs. ExPASy Swiss-Prot
Match: Q9FDX9 (Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis thaliana OX=3702 GN=GG1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.5e-04
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 30 GKRREIAKIHMLEREIGILEDELKSVESLQPVSTCCKEISDFVTVNSDPLTP 82
          GK R +A++  +E+E+  LE ELK VE+   VST C+E+   +    DPL P
Sbjct: 19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLP 70

[Close]

BLAST of Carg21923-RA vs. ExPASy TrEMBL
Match: A0A6J1F450 (guanine nucleotide-binding protein subunit gamma 3-like OS=Cucurbita moschata OX=3662 GN=LOC111440055 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.2e-37
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60
          MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP
Sbjct: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60

Query: 61 VSTCCKEISDFVTVNSDPLTPT----YEQCPFF 90
          VS CCKEISDFVTVNSDPLTPT    +++C F+
Sbjct: 61 VSICCKEISDFVTVNSDPLTPTCRTKHKRCRFW 93

[Close]

BLAST of Carg21923-RA vs. ExPASy TrEMBL
Match: A0A6J1HWR3 (guanine nucleotide-binding protein subunit gamma 3-like OS=Cucurbita maxima OX=3661 GN=LOC111467550 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60
          MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQ 
Sbjct: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQS 60

Query: 61 VSTCCKEISDFVTVNSDPLTPT----YEQCPFF 90
          VS CCKEISDFVTVNSDPLTPT    +++C F+
Sbjct: 61 VSICCKEISDFVTVNSDPLTPTCRTKHKRCRFW 93

[Close]

BLAST of Carg21923-RA vs. ExPASy TrEMBL
Match: B9RR96 (G protein gamma domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0711500 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.2e-33
Identity = 102/236 (43.22%), Postives = 131/236 (55.51%), Query Frame = 0


Query: 8   SSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQPVSTCCKE 67
           SSSVPSLPPPCPKSPPEYPDLYGKRRE+AK+ MLEREIG LE+ELKSV+ LQP + CCKE
Sbjct: 12  SSSVPSLPPPCPKSPPEYPDLYGKRREMAKVQMLEREIGFLEEELKSVQGLQPATRCCKE 71

Query: 68  ISDFVTVNSDPLTPTYEQCP-----FFFQADVGQNISDAASGSGYADFLALICHGCAAAL 127
           +SDFV  NSDPL PT           FF A++G+      SGSG+ ++ ALI HG   A 
Sbjct: 72  VSDFVVANSDPLIPTKGTIRLIFLFIFFLAEIGRTEGLVDSGSGFVEYPALISHGSVVAA 131

Query: 128 ALDALSPLRC----LAPVFANHATSHHVQ-----TAVISRSVVSSPV------PLHFAVE 187
             DA     C       V   +AT+  V      +A ++  V  +P       P+   VE
Sbjct: 132 IRDAALVQSCHGAVSVTVTVTYATAAPVSAAQHPSANVALGVAPAPALALVQHPIAVGVE 191

Query: 188 TSRAVDGVAFCHYLRSHAPMAAAAANANAAVSALFQNVHRYLLVASVQNPVVTLAL 224
           +  A    A   +LR+     A  AN  A ++ +     R  LVA ++  +  +AL
Sbjct: 192 SPHAAVTAALVDFLRA---QIALVANLRAQIALVADLRARIALVADLRARIALVAL 244

[Close]

BLAST of Carg21923-RA vs. ExPASy TrEMBL
Match: A0A6A6LUC7 (G protein gamma domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_027269 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.5e-31
Identity = 99/199 (49.75%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 3   ARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQPVS 62
           A+S  SSSVPSLPPPCPKSPPEYPDLYGKRRE+AK+ MLEREIG LE+ELKSV+SLQP S
Sbjct: 132 AKSGCSSSVPSLPPPCPKSPPEYPDLYGKRREMAKVQMLEREIGFLEEELKSVDSLQPAS 191

Query: 63  TCCKEISDFVTVNSDPLTPTYEQCPFFFQADVGQNISDAASGSGYADFLALICHGCAAAL 122
            CCKE+++FV  N DPL PT E                  SGSG  ++ ALI HG   A 
Sbjct: 192 RCCKEVTEFVVANPDPLMPTIEGL--------------VDSGSGCVEYPALISHGFVVAA 251

Query: 123 ALDALSPLRCLAPVFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHYLR 182
             DAL    C A V A  AT  HV T V +  V ++  P          + GVA    + 
Sbjct: 252 TRDALCAYTCPAVVTAT-ATVIHV-TYVTAVHVFAAQHP----------IGGVALAGAVA 304

Query: 183 SHAPMAAAAANANAAVSAL 202
               +A A A A A V AL
Sbjct: 312 LSLALALAVALALALVLAL 304

[Close]

BLAST of Carg21923-RA vs. ExPASy TrEMBL
Match: A0A6J1D2Z2 (guanine nucleotide-binding protein subunit gamma 3 OS=Momordica charantia OX=3673 GN=LOC111016512 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 74/93 (79.57%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60
          MA RSVYSSSVPSLPPP PKSPPEYPDLYGKRREIAKI  LEREIG LE+ELKSV+SLQP
Sbjct: 1  MATRSVYSSSVPSLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEEELKSVQSLQP 60

Query: 61 VSTCCKEISDFVTVNSDPLTPT----YEQCPFF 90
          VS CCKEISDFV  +SDPLTPT     E+C F+
Sbjct: 61 VSICCKEISDFVMASSDPLTPTCRTKRERCRFW 93

[Close]

BLAST of Carg21923-RA vs. TAIR 10
Match: AT5G20635.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). )

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-24
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 2  AARSVYSSSV--PSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQ 61
          AA  V SSS+   SLPPP PKSPPEYPDLYGKRRE A++ MLEREIG LE E+K +E +Q
Sbjct: 16 AAGGVSSSSLAPSSLPPPRPKSPPEYPDLYGKRREAARVQMLEREIGFLEGEIKFIEGVQ 75

Query: 62 PVSTCCKEISDFVTVNSDPLTP 82
          P S C KE+SDFV  NSDPL P
Sbjct: 76 PASRCIKEVSDFVVANSDPLIP 97

[Close]

BLAST of Carg21923-RA vs. TAIR 10
Match: AT3G63420.1 (Ggamma-subunit 1 )

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-05
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 30 GKRREIAKIHMLEREIGILEDELKSVESLQPVSTCCKEISDFVTVNSDPLTP 82
          GK R +A++  +E+E+  LE ELK VE+   VST C+E+   +    DPL P
Sbjct: 19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLP 70

[Close]

BLAST of Carg21923-RA vs. TAIR 10
Match: AT3G63420.2 (Ggamma-subunit 1 )

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-05
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 30 GKRREIAKIHMLEREIGILEDELKSVESLQPVSTCCKEISDFVTVNSDPLTP 82
          GK R +A++  +E+E+  LE ELK VE+   VST C+E+   +    DPL P
Sbjct: 19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLP 70

The following BLAST results are available for this feature:

BLAST of Carg21923-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021974.1	3.8e-125	100.00	Guanine nucleotide-binding protein subunit gamma 3, partial [Cucurbita argyrospe...	[more]
KAG6588088.1	1.3e-88	79.57	hypothetical protein SDJN03_16653, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022933212.1	6.6e-37	89.25	guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita moschata] >XP...	[more]
XP_023530602.1	6.6e-37	89.25	guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita pepo subsp. p...	[more]
XP_022968265.1	5.6e-36	88.17	guanine nucleotide-binding protein subunit gamma 3-like [Cucurbita maxima] >XP_0...	[more]

BLAST of Carg21923-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AWT8	3.3e-23	68.29	Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana OX=37...	[more]
Q9FDX9	4.5e-04	42.31	Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Carg21923-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F450	3.2e-37	89.25	guanine nucleotide-binding protein subunit gamma 3-like OS=Cucurbita moschata OX...	[more]
A0A6J1HWR3	2.7e-36	88.17	guanine nucleotide-binding protein subunit gamma 3-like OS=Cucurbita maxima OX=3...	[more]
B9RR96	2.2e-33	43.22	G protein gamma domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_07...	[more]
A0A6A6LUC7	4.5e-31	49.75	G protein gamma domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714...	[more]
A0A6J1D2Z2	5.9e-31	79.57	guanine nucleotide-binding protein subunit gamma 3 OS=Momordica charantia OX=367...	[more]

BLAST of Carg21923-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20635.1	2.4e-24	68.29	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G63420.1	3.2e-05	42.31	Ggamma-subunit 1	[more]
AT3G63420.2	3.2e-05	42.31	Ggamma-subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR32378:SF10	GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3	coord: 1..104
None	No IPR available	PANTHER	PTHR32378	GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3	coord: 1..104
IPR015898	G-protein gamma-like domain	PFAM	PF00631	G-gamma	coord: 40..83 e-value: 1.2E-6 score: 28.5

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg21923	Carg21923	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21923-RA:5	Carg21923-RA:5	exon
Carg21923-RA:4	Carg21923-RA:4	exon
Carg21923-RA:3	Carg21923-RA:3	exon
Carg21923-RA:2	Carg21923-RA:2	exon
Carg21923-RA:1	Carg21923-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21923-RA:three_prime_utr	Carg21923-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21923-RA:cds	Carg21923-RA:cds_5	CDS
Carg21923-RA:cds	Carg21923-RA:cds_4	CDS
Carg21923-RA:cds	Carg21923-RA:cds_3	CDS
Carg21923-RA:cds	Carg21923-RA:cds_2	CDS
Carg21923-RA:cds	Carg21923-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg21923-RA	Carg21923-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G protein-coupled receptor signaling pathway