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Carg18847-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATTGAATAAACAGGGAGGTGGATTGTGAGATCCCACGTCGGTTGGATATAGAAAGAAAAACCTCTCCCTAATAGACGCGTTTTAAAAGTGGACGACGATATGTAATGGGCCAAAATGGATATTCTCCGCCAAACAACCATGAAAGAAAAACATCTCACAATGCAACCATTATGAATGATCCAAAAGTCCCGCCCATAAAAAAGGCTCATTTCTTCTTCACACACCATTTCCATGATGAGGCTTTGTAGCAAAGTTTCTTGTTAACTTCATTCCCCAAACTATTGAAATTGTTCTTCTAAAAGGTCTTTTTCTTTCCATCTCTTCCAAATTTATCTTCCATTATACAATAATGTCTTTCACATCTCATTACATTTCTTTGTTAATCATCGTTTTGACGATGGCCCCATTGAGTTCATGTCAGTTCGATTTGATCCGAACTCTTCTTGGTCTCACCCACATCCAAGGAACTCTCTATTGTACTCTCAACGGCAACATGATCTACGGCCTTTTGACCCCAACTTTTCCGAGTGAGTTAAAGTTGCAGTGCTTTTTTTCTTTTTTTTTTTTTTTTGTCTCTAAACATTTTGGAGTTTATTATGAGGTGTTGAAGATGCGGCGGTGGAAATGCACTGCGGAGCCGGCGGAACTGTGATTTCGTCCGTCAAATCCGATGCGACCGGCAGGTTCTCAATGCTTCTCGATGCGCCTCAACTGCTACTCTCCTTTTTACTAAACAATTGCAGCCTTGTCGTCACGACGCCGCTCGTCAATTGCAACGGCGCTATGCCGTCGTTTGGCGCCCTCGCCTCGCCGCTGCAACTCATCGGAAATACGTTTCTTGGACTCTTCAATATCACCAATATCATTCCGGTAGGGTTCCGATTCCTTCCGATTCTTTAATATTCAAGAAATATGTTCACCATTGTTGATGTAGCTAACTAAATAAACGGAGTCCTTAACTTGTTGCGCTGTAATGATGTATGTGATGATCGAGTACTAAATCTCTACTTGGCTAATTTTTAGGTGCTTTGGTTTGT CATTGAATAAACAGGGAGGTGGATTGTGAGATCCCACGTCGGTTGGATATAGAAAGAAAAACCTCTCCCTAATAGACGCGTTTTAAAAGTGGACGACGATATGTAATGGGCCAAAATGGATATTCTCCGCCAAACAACCATGAAAGAAAAACATCTCACAATGCAACCATTATGAATGATCCAAAAGTCCCGCCCATAAAAAAGGCTCATTTCTTCTTCACACACCATTTCCATGATGAGGCTTTGTAGCAAAGTTTCTTGTTAACTTCATTCCCCAAACTATTGAAATTGTTCTTCTAAAAGGTCTTTTTCTTTCCATCTCTTCCAAATTTATCTTCCATTATACAATAATGTCTTTCACATCTCATTACATTTCTTTGTTAATCATCGTTTTGACGATGGCCCCATTGAGTTCATGTCAGTTCGATTTGATCCGAACTCTTCTTGGTCTCACCCACATCCAAGGAACTCTCTATTGTACTCTCAACGGCAACATGATCTACGGCCTTTTGACCCCAACTTTTCCGAATGCGGCGGTGGAAATGCACTGCGGAGCCGGCGGAACTGTGATTTCGTCCGTCAAATCCGATGCGACCGGCAGGTTCTCAATGCTTCTCGATGCGCCTCAACTGCTACTCTCCTTTTTACTAAACAATTGCAGCCTTGTCGTCACGACGCCGCTCGTCAATTGCAACGGCGCTATGCCGTCGTTTGGCGCCCTCGCCTCGCCGCTGCAACTCATCGGAAATACGTTTCTTGGACTCTTCAATATCACCAATATCATTCCGGTAGGGTTCCGATTCCTTCCGATTCTTTAATATTCAAGAAATATGTTCACCATTGTTGATGTAGCTAACTAAATAAACGGAGTCCTTAACTTGTTGCGCTGTAATGATGTATGTGATGATCGAGTACTAAATCTCTACTTGGCTAATTTTTAGGTGCTTTGGTTTGT ATGTCTTTCACATCTCATTACATTTCTTTGTTAATCATCGTTTTGACGATGGCCCCATTGAGTTCATGTCAGTTCGATTTGATCCGAACTCTTCTTGGTCTCACCCACATCCAAGGAACTCTCTATTGTACTCTCAACGGCAACATGATCTACGGCCTTTTGACCCCAACTTTTCCGAATGCGGCGGTGGAAATGCACTGCGGAGCCGGCGGAACTGTGATTTCGTCCGTCAAATCCGATGCGACCGGCAGGTTCTCAATGCTTCTCGATGCGCCTCAACTGCTACTCTCCTTTTTACTAAACAATTGCAGCCTTGTCGTCACGACGCCGCTCGTCAATTGCAACGGCGCTATGCCGTCGTTTGGCGCCCTCGCCTCGCCGCTGCAACTCATCGGAAATACGTTTCTTGGACTCTTCAATATCACCAATATCATTCCGGTAGGGTTCCGATTCCTTCCGATTCTTTAA MSFTSHYISLLIIVLTMAPLSSCQFDLIRTLLGLTHIQGTLYCTLNGNMIYGLLTPTFPNAAVEMHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMPSFGALASPLQLIGNTFLGLFNITNIIPVGFRFLPIL Homology
BLAST of Carg18847-RA vs. NCBI nr
Match: KAG7026315.1 (hypothetical protein SDJN02_12816 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 302.4 bits (773), Expect = 2.3e-78 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
BLAST of Carg18847-RA vs. NCBI nr
Match: XP_023000425.1 (phylloplanin-like [Cucurbita maxima]) HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74 Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0
BLAST of Carg18847-RA vs. NCBI nr
Match: XP_022930243.1 (phylloplanin-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Carg18847-RA vs. NCBI nr
Match: XP_022930242.1 (uncharacterized protein LOC111436755 isoform X1 [Cucurbita moschata]) HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Carg18847-RA vs. NCBI nr
Match: KAG6593974.1 (hypothetical protein SDJN03_13450, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Carg18847-RA vs. ExPASy Swiss-Prot
Match: Q56S59 (Phylloplanin OS=Nicotiana tabacum OX=4097 PE=1 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 6.4e-15 Identity = 56/144 (38.89%), Postives = 81/144 (56.25%), Query Frame = 0
BLAST of Carg18847-RA vs. ExPASy TrEMBL
Match: A0A6J1KIA9 (phylloplanin-like OS=Cucurbita maxima OX=3661 GN=LOC111494688 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 5.7e-75 Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0
BLAST of Carg18847-RA vs. ExPASy TrEMBL
Match: A0A6J1EPU9 (uncharacterized protein LOC111436755 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436755 PE=4 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 4.8e-66 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Carg18847-RA vs. ExPASy TrEMBL
Match: A0A6J1EUI5 (phylloplanin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436755 PE=4 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 4.8e-66 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Carg18847-RA vs. ExPASy TrEMBL
Match: A0A6J1CAI6 (phylloplanin-like OS=Momordica charantia OX=3673 GN=LOC111009877 PE=4 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53 Identity = 113/155 (72.90%), Postives = 129/155 (83.23%), Query Frame = 0
BLAST of Carg18847-RA vs. ExPASy TrEMBL
Match: A0A1S3C7U3 (phylloplanin-like OS=Cucumis melo OX=3656 GN=LOC103497845 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 1.9e-46 Identity = 102/152 (67.11%), Postives = 120/152 (78.95%), Query Frame = 0
BLAST of Carg18847-RA vs. TAIR 10
Match: AT3G16660.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 111.3 bits (277), Expect = 7.0e-25 Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 0
BLAST of Carg18847-RA vs. TAIR 10
Match: AT3G16670.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 89.4 bits (220), Expect = 2.8e-18 Identity = 49/140 (35.00%), Postives = 80/140 (57.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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