Carg18241-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18241-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 18155957 .. 18156283 (-)
Sequence length327
RNA-Seq ExpressionCarg18241-RA
SyntenyCarg18241-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGTATTTCTCGTGTGTTTCACACTTCCTCATCGGAGGCCAAACATTGATATGCCTCTGACCCATAACTTGCTTGGAAACCGAGTACGAGAGCAAGTAAATGTGGCCGATGGAGAAGAGCAGCAGCAGGGGGAATGCTGGGATGGACTCCAGCAGGGTGCCAGATTCCAAGTTGGGCAATGGAAGTTTTGGCATGGCAGATGTGCGTTCGAGGTCGAGAGTAATTGTACTGGTGGGTGGAATCATATATGGTTAAATGTTGAAATGGGGGCGGATTCGAGTTTCCCTTGTCTTTGTGATGTCTTCCTGATCGAATTTTGA

mRNA sequence

ATGGAGAAGGTATTTCTCGTGTGTTTCACACTTCCTCATCGGAGGCCAAACATTGATATGCCTCTGACCCATAACTTGCTTGGAAACCGAGTACGAGAGCAAGTAAATGTGGCCGATGGAGAAGAGCAGCAGCAGGGGGAATGCTGGGATGGACTCCAGCAGGGTGCCAGATTCCAAGTTGGGCAATGGAAGTTTTGGCATGGCAGATGTGCGTTCGAGGTCGAGAGTAATTGTACTGGTGGGTGGAATCATATATGGTTAAATGTTGAAATGGGGGCGGATTCGAGTTTCCCTTGTCTTTGTGATGTCTTCCTGATCGAATTTTGA

Coding sequence (CDS)

ATGGAGAAGGTATTTCTCGTGTGTTTCACACTTCCTCATCGGAGGCCAAACATTGATATGCCTCTGACCCATAACTTGCTTGGAAACCGAGTACGAGAGCAAGTAAATGTGGCCGATGGAGAAGAGCAGCAGCAGGGGGAATGCTGGGATGGACTCCAGCAGGGTGCCAGATTCCAAGTTGGGCAATGGAAGTTTTGGCATGGCAGATGTGCGTTCGAGGTCGAGAGTAATTGTACTGGTGGGTGGAATCATATATGGTTAAATGTTGAAATGGGGGCGGATTCGAGTTTCCCTTGTCTTTGTGATGTCTTCCTGATCGAATTTTGA

Protein sequence

MEKVFLVCFTLPHRRPNIDMPLTHNLLGNRVREQVNVADGEEQQQGECWDGLQQGARFQVGQWKFWHGRCAFEVESNCTGGWNHIWLNVEMGADSSFPCLCDVFLIEF
Homology
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BLAST of Carg18241-RA vs. NCBI nr
Match: KAG7032753.1 (hypothetical protein SDJN02_06803, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.9 bits (616), Expect = 2.6e-60
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MEKVFLVCFTLPHRRPNIDMPLTHNLLGNRVREQVNVADGEEQQQGECWDGLQQGARFQV 60
           MEKVFLVCFTLPHRRPNIDMPLTHNLLGNRVREQVNVADGEEQQQGECWDGLQQGARFQV
Sbjct: 1   MEKVFLVCFTLPHRRPNIDMPLTHNLLGNRVREQVNVADGEEQQQGECWDGLQQGARFQV 60

Query: 61  GQWKFWHGRCAFEVESNCTGGWNHIWLNVEMGADSSFPCLCDVFLIEF 109
           GQWKFWHGRCAFEVESNCTGGWNHIWLNVEMGADSSFPCLCDVFLIEF
Sbjct: 61  GQWKFWHGRCAFEVESNCTGGWNHIWLNVEMGADSSFPCLCDVFLIEF 108

The following BLAST results are available for this feature:
BLAST of Carg18241-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032753.12.6e-60100.00hypothetical protein SDJN02_06803, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg18241-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18241-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18241-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg18241Carg18241gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18241-RA:1Carg18241-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18241-RA:cdsCarg18241-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg18241-RACarg18241-RA-proteinpolypeptide