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Carg15881-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TCTCGCTCGCTCTGTATCTCTGTGTTGATCTCTGAAGCTTTTGTTAATGGAGATGGGCGAAGGTCTTACCAGACAACAAATGGATCAGCTTCAAGAAGTTTTTCATCTATTTGACAGAAACGGAGATGGTGGGTCACTTTCTTTCTTCCTTTCTTTTCCCCTAACATCATCATCCAGTTCAATTCATCTCGTTTTTTTCTGAATCGAACCAAGCAGGTTGCATAACCCTTGACGAACTAAGAACAGAGATCCAAAAATTCGATTACAATCTCACAGAAGAAGAACTCAAGGACATGATTAACGAAGTCGATGCTGATGGAAACGGAACCATTGAATTCGGGGAGCTCCGAAATTTGATGTCCAAAACCTTCATGGTCTGTCTCATTTCTTTCGATTCCCCTGATTTTCAGTTTTTTTCTTCTTGTTCTTGTTCTAAGCCGAGTCTGTCCTGTTTTTCAGGAAGAAACAGAGGAGAAACTCGAAGAAGCCTTCAAACTGTTCGACGAAAATCAAGATGGATATATATCAGCAAACGAGGTAAAAACACAAAGATCTGGTTCTTCTTTGATCAAATACATATTCTTCCCCTGTTCTTGAGAAAACCCATCAAAATCTTTCATGTTTTTTTTGGCAGCTGAGCAGTGTTCTTCGGATGCTTAATTTGGGGGAGAGGTTAACATACGAGGAGATTCAGCAAATGATCAATGATGCTGATTTGGATGGAGATGGGCATGTTGATTACCATGAATTCGTCAACATGATGACGGAGTATTGGAAAAAAGCTGATGATGAATCAGAAATCCTACCATAA TCTCGCTCGCTCTGTATCTCTGTGTTGATCTCTGAAGCTTTTGTTAATGGAGATGGGCGAAGGTCTTACCAGACAACAAATGGATCAGCTTCAAGAAGTTTTTCATCTATTTGACAGAAACGGAGATGGTTGCATAACCCTTGACGAACTAAGAACAGAGATCCAAAAATTCGATTACAATCTCACAGAAGAAGAACTCAAGGACATGATTAACGAAGTCGATGCTGATGGAAACGGAACCATTGAATTCGGGGAGCTCCGAAATTTGATGTCCAAAACCTTCATGGAAGAAACAGAGGAGAAACTCGAAGAAGCCTTCAAACTGTTCGACGAAAATCAAGATGGATATATATCAGCAAACGAGCTGAGCAGTGTTCTTCGGATGCTTAATTTGGGGGAGAGGTTAACATACGAGGAGATTCAGCAAATGATCAATGATGCTGATTTGGATGGAGATGGGCATGTTGATTACCATGAATTCGTCAACATGATGACGGAGTATTGGAAAAAAGCTGATGATGAATCAGAAATCCTACCATAA ATGGAGATGGGCGAAGGTCTTACCAGACAACAAATGGATCAGCTTCAAGAAGTTTTTCATCTATTTGACAGAAACGGAGATGGTTGCATAACCCTTGACGAACTAAGAACAGAGATCCAAAAATTCGATTACAATCTCACAGAAGAAGAACTCAAGGACATGATTAACGAAGTCGATGCTGATGGAAACGGAACCATTGAATTCGGGGAGCTCCGAAATTTGATGTCCAAAACCTTCATGGAAGAAACAGAGGAGAAACTCGAAGAAGCCTTCAAACTGTTCGACGAAAATCAAGATGGATATATATCAGCAAACGAGCTGAGCAGTGTTCTTCGGATGCTTAATTTGGGGGAGAGGTTAACATACGAGGAGATTCAGCAAATGATCAATGATGCTGATTTGGATGGAGATGGGCATGTTGATTACCATGAATTCGTCAACATGATGACGGAGTATTGGAAAAAAGCTGATGATGAATCAGAAATCCTACCATAA MEMGEGLTRQQMDQLQEVFHLFDRNGDGCITLDELRTEIQKFDYNLTEEELKDMINEVDADGNGTIEFGELRNLMSKTFMEETEEKLEEAFKLFDENQDGYISANELSSVLRMLNLGERLTYEEIQQMINDADLDGDGHVDYHEFVNMMTEYWKKADDESEILP Homology
BLAST of Carg15881-RA vs. NCBI nr
Match: XP_023514743.1 (calmodulin-like protein 8 [Cucurbita pepo subsp. pepo] >KAG6593871.1 Calmodulin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026214.1 Calmodulin-like protein 8 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 330.5 bits (846), Expect = 8.3e-87 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Carg15881-RA vs. NCBI nr
Match: XP_022930395.1 (calmodulin-like protein 8 [Cucurbita moschata]) HSP 1 Score: 328.2 bits (840), Expect = 4.1e-86 Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Carg15881-RA vs. NCBI nr
Match: XP_023000551.1 (calmodulin-like protein 8 [Cucurbita maxima]) HSP 1 Score: 325.1 bits (832), Expect = 3.5e-85 Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0
BLAST of Carg15881-RA vs. NCBI nr
Match: XP_038907158.1 (calmodulin-2/4-like [Benincasa hispida]) HSP 1 Score: 222.6 bits (566), Expect = 2.4e-54 Identity = 117/164 (71.34%), Postives = 130/164 (79.27%), Query Frame = 0
BLAST of Carg15881-RA vs. NCBI nr
Match: XP_023548669.1 (calmodulin-1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 211.5 bits (537), Expect = 5.6e-51 Identity = 107/152 (70.39%), Postives = 127/152 (83.55%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy Swiss-Prot
Match: O23320 (Calmodulin-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=CML8 PE=1 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 3.2e-41 Identity = 86/144 (59.72%), Postives = 114/144 (79.17%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy Swiss-Prot
Match: Q9LIK5 (Calmodulin-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=CML11 PE=2 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 5.5e-41 Identity = 86/144 (59.72%), Postives = 113/144 (78.47%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy Swiss-Prot
Match: P0DH95 (Calmodulin-1 OS=Arabidopsis thaliana OX=3702 GN=CAM1 PE=1 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 4.3e-38 Identity = 81/148 (54.73%), Postives = 113/148 (76.35%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy Swiss-Prot
Match: P0DH96 (Calmodulin-4 OS=Arabidopsis thaliana OX=3702 GN=CAM4 PE=1 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 4.3e-38 Identity = 81/148 (54.73%), Postives = 113/148 (76.35%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy Swiss-Prot
Match: P04464 (Calmodulin OS=Triticum aestivum OX=4565 PE=1 SV=3) HSP 1 Score: 158.3 bits (399), Expect = 7.4e-38 Identity = 81/148 (54.73%), Postives = 112/148 (75.68%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy TrEMBL
Match: A0A6J1EWT4 (calmodulin-like protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111436855 PE=4 SV=1) HSP 1 Score: 328.2 bits (840), Expect = 2.0e-86 Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy TrEMBL
Match: A0A6J1KG52 (calmodulin-like protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111494791 PE=4 SV=1) HSP 1 Score: 325.1 bits (832), Expect = 1.7e-85 Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy TrEMBL
Match: A0A0A0LLM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G215510 PE=4 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 2.7e-51 Identity = 111/163 (68.10%), Postives = 132/163 (80.98%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy TrEMBL
Match: A0A6J1CB59 (calmodulin-like protein 8 OS=Momordica charantia OX=3673 GN=LOC111009891 PE=4 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 4.7e-51 Identity = 109/154 (70.78%), Postives = 125/154 (81.17%), Query Frame = 0
BLAST of Carg15881-RA vs. ExPASy TrEMBL
Match: A0A6J1H6E9 (calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111460040 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 8.8e-50 Identity = 104/152 (68.42%), Postives = 126/152 (82.89%), Query Frame = 0
BLAST of Carg15881-RA vs. TAIR 10
Match: AT4G14640.1 (calmodulin 8 ) HSP 1 Score: 169.5 bits (428), Expect = 2.3e-42 Identity = 86/144 (59.72%), Postives = 114/144 (79.17%), Query Frame = 0
BLAST of Carg15881-RA vs. TAIR 10
Match: AT3G22930.1 (calmodulin-like 11 ) HSP 1 Score: 168.7 bits (426), Expect = 3.9e-42 Identity = 86/144 (59.72%), Postives = 113/144 (78.47%), Query Frame = 0
BLAST of Carg15881-RA vs. TAIR 10
Match: AT1G66410.1 (calmodulin 4 ) HSP 1 Score: 159.1 bits (401), Expect = 3.1e-39 Identity = 81/148 (54.73%), Postives = 113/148 (76.35%), Query Frame = 0
BLAST of Carg15881-RA vs. TAIR 10
Match: AT5G37780.1 (calmodulin 1 ) HSP 1 Score: 159.1 bits (401), Expect = 3.1e-39 Identity = 81/148 (54.73%), Postives = 113/148 (76.35%), Query Frame = 0
BLAST of Carg15881-RA vs. TAIR 10
Match: AT2G41110.1 (calmodulin 2 ) HSP 1 Score: 156.4 bits (394), Expect = 2.0e-38 Identity = 80/148 (54.05%), Postives = 111/148 (75.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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