Carg13028-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13028-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	AP complex subunit sigma
Location	Carg_Chr10: 3144426 .. 3145374 (+)
Sequence length	745
RNA-Seq Expression	Carg13028-RA
Synteny	Carg13028-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGGTAAGCCCTCGTGTTCGATCTGAGATTATGTCTTCCGAACTTCGTTTGCCTTATCGTTTCTTTTGGGAGTTTATATTCTCGACGAGTTTCCTTTTCATCTATCAACGGATAAAAACTGTTTCTTGTTCAAAAGAAATGTGAGATTATGGGTTCTGAATGATGTTTCCTTCATGGATTTTACTGAATTGTCCGATTGACTTGCAGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGAAAAATCTACGAATTATAATGTTTGGTGCAAAATCTTGGCTGTCCTTATACTGTACGTACTCCATTAAAGCTATCGACTTGATGTTAATGAATTTATTTGATTGTGCTCTGTTCAGCCACTTGGTAAAATGCATGTGATAGATCTCAACATCAATCCAAGCCAATTGAAGCTTAATCCATCAACCTTTAGAGTTTCCCAAATTGATTTTACAACTTTTAGGTTTTAGGCTGCTTGGTTCGTGATTTGATAATACAATTTTTAATACCAGGGTTTCAATCTTTGATAATATATTTATGAAATATCAGATTCGATTCTTCTTAAGTCGATGAGAATAGGTTTAGGCTCGACTAGATTTAGAAATTCGTTAGGACGTTTACGAGGCTATTCTTCACGATGGGAATGAATTTTTGTTCATTTTCTCAGTAAATAACTTATCTTTGTTCATTTTTTTCGTTACGACTAAAAATTTAGATATTCATTAAGACCTTTAGGAGGCTGTTCTTCACTTTACAAATTTATTTTTGTTTTTTGT

mRNA sequence

ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGAAAAATCTACGAATTATAATGTTTGGTGCAAAATCTTGGCTGTCCTTATACTGTACGTACTCCATTAAAGCTATCGACTTGATGTTAATGAATTTATTTGATTGTGCTCTGTTCAGCCACTTGGTAAAATGCATGTGATAGATCTCAACATCAATCCAAGCCAATTGAAGCTTAATCCATCAACCTTTAGAGTTTCCCAAATTGATTTTACAACTTTTAGGTTTTAGGCTGCTTGGTTCGTGATTTGATAATACAATTTTTAATACCAGGGTTTCAATCTTTGATAATATATTTATGAAATATCAGATTCGATTCTTCTTAAGTCGATGAGAATAGGTTTAGGCTCGACTAGATTTAGAAATTCGTTAGGACGTTTACGAGGCTATTCTTCACGATGGGAATGAATTTTTGTTCATTTTCTCAGTAAATAACTTATCTTTGTTCATTTTTTTCGTTACGACTAAAAATTTAGATATTCATTAAGACCTTTAGGAGGCTGTTCTTCACTTTACAAATTTATTTTTGTTTTTTGT

Coding sequence (CDS)

ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGA

Protein sequence

MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

Homology

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: KAG7023629.1 (AP-4 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNIL 60
          MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNIL
Sbjct: 1  MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNIL 60

Query: 61 SPIQLMEKSS 71
          SPIQLMEKSS
Sbjct: 61 SPIQLMEKSS 70

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: KAF9680453.1 (hypothetical protein SADUNF_Sadunf06G0122700 [Salix dunnii])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 2   LQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILS 61
           LQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILS
Sbjct: 163 LQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILS 222

Query: 62  PIQLMEKSS 71
           PIQLM+K+S
Sbjct: 223 PIQLMDKTS 231

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: KAG6589966.1 (ATP-dependent 6-phosphofructokinase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 410 ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 469

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 470 IQLMEKSS 477

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: XP_022144808.1 (AP-4 complex subunit sigma [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. NCBI nr
Match: XP_004135683.1 (AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 complex subunit sigma [Cucumis melo] >XP_022960614.1 AP-4 complex subunit sigma [Cucurbita moschata] >XP_022987894.1 AP-4 complex subunit sigma [Cucurbita maxima] >XP_023515579.1 AP-4 complex subunit sigma [Cucurbita pepo subsp. pepo] >XP_038878646.1 AP-4 complex subunit sigma [Benincasa hispida] >TYK10132.1 AP-4 complex subunit sigma [Cucumis melo var. makuwa] >KGN66196.1 hypothetical protein Csa_007414 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. ExPASy Swiss-Prot
Match: O82201 (AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-29
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NILSP
Sbjct: 76  ENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSP 135

Query: 63  IQLMEKS 70
           IQLM+K+
Sbjct: 136 IQLMDKA 142

[Close]

BLAST of Carg13028-RA vs. ExPASy Swiss-Prot
Match: Q9Y587 (AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P
Sbjct: 75  ENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAP 134

Query: 63  IQLMEKSS 71
           + +++K S
Sbjct: 135 LLILDKMS 142

[Close]

BLAST of Carg13028-RA vs. ExPASy Swiss-Prot
Match: Q3ZBB6 (AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P
Sbjct: 75  ENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAP 134

Query: 63  IQLMEKSS 71
           + +++K S
Sbjct: 135 LLILDKMS 142

[Close]

BLAST of Carg13028-RA vs. ExPASy Swiss-Prot
Match: Q9WVL1 (AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P
Sbjct: 75  ENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAP 134

Query: 63  IQLMEKSS 71
           + +++K S
Sbjct: 135 LLILDKLS 142

[Close]

BLAST of Carg13028-RA vs. ExPASy Swiss-Prot
Match: Q9P7N2 (AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vas2 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-12
Identity = 32/60 (53.33%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NEL ILE IH  VE +D++FGNVCELD++F+ EKA++++EE+++ G + E+SK+N+LS +
Sbjct: 77  NELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAGELQESSKTNVLSAV 136

[Close]

BLAST of Carg13028-RA vs. ExPASy TrEMBL
Match: A0A6J1JK41 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111485299 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. ExPASy TrEMBL
Match: A0A5D3CFV6 (AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002750 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. ExPASy TrEMBL
Match: A0A0A0M1T6 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. ExPASy TrEMBL
Match: A0A6J1CU99 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111014402 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. ExPASy TrEMBL
Match: A0A6J1HBI1 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111461350 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP
Sbjct: 76  ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135

Query: 63  IQLMEKSS 71
           IQLMEKSS
Sbjct: 136 IQLMEKSS 143

[Close]

BLAST of Carg13028-RA vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-30
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NILSP
Sbjct: 76  ENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSP 135

Query: 63  IQLMEKS 70
           IQLM+K+
Sbjct: 136 IQLMDKA 142

[Close]

BLAST of Carg13028-RA vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-12
Identity = 30/66 (45.45%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 3   QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 62
           +NELA+L+ I +LVET+D+ F NVCELDI+F+  K H +L+E+V  G ++ETS + ++  
Sbjct: 80  ENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKA 139

Query: 63  IQLMEK 69
           ++ + K
Sbjct: 140 VEEISK 145

[Close]

BLAST of Carg13028-RA vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 4.4e-11
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G + ETSK  I+  +
Sbjct: 76  NELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERM 135

Query: 64  QLMEK 69
             +EK
Sbjct: 136 SELEK 140

[Close]

BLAST of Carg13028-RA vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 63.2 bits (152), Expect = 9.8e-11
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G + E+SK  +   I
Sbjct: 76  NELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARII 135

Query: 64  QLMEK 69
              ++
Sbjct: 136 SAQDQ 140

[Close]

BLAST of Carg13028-RA vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 63.2 bits (152), Expect = 9.8e-11
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 4   NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 63
           NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G + E+SK  +   I
Sbjct: 76  NELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARII 135

Query: 64  QLMEK 69
              ++
Sbjct: 136 SAQDQ 140

The following BLAST results are available for this feature:

BLAST of Carg13028-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023629.1	1.5e-29	100.00	AP-4 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAF9680453.1	2.2e-28	97.10	hypothetical protein SADUNF_Sadunf06G0122700 [Salix dunnii]	[more]
KAG6589966.1	2.2e-28	98.53	ATP-dependent 6-phosphofructokinase 3, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022144808.1	2.2e-28	98.53	AP-4 complex subunit sigma [Momordica charantia]	[more]
XP_004135683.1	2.2e-28	98.53	AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 com...	[more]

BLAST of Carg13028-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82201	1.6e-29	92.54	AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=...	[more]
Q9Y587	2.6e-16	55.88	AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1	[more]
Q3ZBB6	4.4e-16	55.88	AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1	[more]
Q9WVL1	5.8e-16	55.88	AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1	[more]
Q9P7N2	1.0e-12	53.33	AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Carg13028-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JK41	1.1e-28	98.53	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111485299 PE=3 SV=1	[more]
A0A5D3CFV6	1.1e-28	98.53	AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0M1T6	1.1e-28	98.53	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1	[more]
A0A6J1CU99	1.1e-28	98.53	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111014402 PE=3 SV=...	[more]
A0A6J1HBI1	1.1e-28	98.53	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111461350 PE=3 SV=1	[more]

BLAST of Carg13028-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19790.1	1.1e-30	92.54	SNARE-like superfamily protein	[more]
AT3G50860.1	3.1e-12	45.45	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	4.4e-11	47.69	SNARE-like superfamily protein	[more]
AT2G17380.1	9.8e-11	43.08	associated protein 19	[more]
AT4G35410.2	9.8e-11	43.08	Clathrin adaptor complex small chain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 3..68 e-value: 9.7E-21 score: 74.2
None	No IPR available	GENE3D	3.30.450.60		coord: 2..70 e-value: 9.9E-30 score: 105.4
None	No IPR available	PANTHER	PTHR11753:SF50	AP COMPLEX SUBUNIT SIGMA	coord: 3..69
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 3..69
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 4..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13028	Carg13028	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13028-RA:1	Carg13028-RA:1	exon
Carg13028-RA:2	Carg13028-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13028-RA:cds	Carg13028-RA:cds	CDS
Carg13028-RA:cds	Carg13028-RA:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13028-RA:three_prime_utr	Carg13028-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13028-RA	Carg13028-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane