Carg12467-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12467-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Phycobilisome rod-core linker polypeptide CpcG2 like
Location	Carg_Chr14: 232388 .. 234606 (-)
Sequence length	724
RNA-Seq Expression	Carg12467-RA
Synteny	Carg12467-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAATAGGTAATTGAATGATCCGACTTTGTTGCATTAGAGGACTTTTTTTTTTCTTCTTTCGTGCCCGTATTTGAATTGGACGATGAGGATATATATAACGAGATTCATTCTCTGGCCCGAGGGACCGATTTTAGTTCCTATTTGGCTCGTTCTATCGAAAGAAAAAAAAAATCAAATTTTCTTTTATGTTTATCTTCTGCCTTCATGGTTGGGTGTGCCGATAAAGAAATCTGAGAAAATTTTGCTAGAGGTCCATTAATCTTCCATATATGAAATTTTATATAAAATTCATGTCCAACGATCTACGTCTGTTAAACAAGATTAAGCGGTTGGAGTTAGAGCAAATTTATTTATTAGCCTTAGCGCCTGGTTGATGGTTGCACGTGCAGCTTGGGAGATTCGATAAACTTTTGCTATAGGTACATTTTCTATTTCTCAATTGAATTGATGGTGTCTGATCTATGTTTGTTAAATCTATGCTGGAATCGGAACTTAAGTGGTTGAGTTAGAGTAAATTTTATCTTTTAATATATTTGTTCAGTTGTTTGTACAAGTTCTAACAGTTAGATTACTTATTTAAAATGGGATGAAAGATCGATACAAGAGGTTTGTCGCTTTGTGCTTTGAAAACAATTCTTTGGTTATAGTCTTTCCAAACCCATTCAAAAGTGGTGGTAAAGGATAGGACAATGTGTAGCTAGATCATTTAGGAGGGAGTTATTAGTGAAAATACCTTTGGAGTCTTTTATCCAGACCCATTAAGCTTGAGGGAACGATGGTTTTTGCAAAGGAAGCGGGGTGTCGATATAGGACAAAGTAAATTTAATCTTGTAATTATATTGTCCTTAAATTCCTATGAAGTGTATATTACGAAAAGACGGGGGAGCGTTGTTTTCAATGAAGACTGTGATCAATTTCTGTACTTGATTTTTATAAATTATTTTCACAATTCTGTTTTTTCACTCTAAATTAGATGAGTCTTCCAGTTTCCCCTTTGTTTATACTGAATGTATTTCATTGATCTGTTCAAAATTCTGTGTGAAGTCTTTTGTGTTCCCCAAGATTGTCTCTGTAGTTATTTAGGCCTTTGGAACAATGTCTCTGCTCTGAAACGGCCATTCCTTGCTGTCTTCCCCAAGATTATCTCTTATCCCTCGTTTGAACAATCTCTAATGCTGACATTGTGGGCATGCAATGATTATGGAGAGGATTGAATCAATTATACTTTTAAGAGTTGGGCGATTTAGGAATCTTTTCCCCCCAGCATTTCTGTGATTGAATCCAAGATGTTCAAGCTCAGTGACAATTGAAAAGTCACGTTTTCCCATTTTCCCTTGCTTGCAGCCGTGCGTTTCAAAGGTTTGCTGTGAGGACATCAAAGCAGATCGAGGATATATCCAACAAAGGTAGCAACTTTAAGGTTTTTGTTTCATTGATTTAACTTATGCTAACAAGACCTTGGAATTGTCTTGCAGCTGCTCAGAAGAAGCAAGAACTTGCGGAACAAGTGAAAGATCTCTCCAAAAATTTTGATGTGAGATTCTTCTTACAGCTTAGATCTTTCTTATTTTGAACAGCATAGACATATATCCTCACGCCTTATTCGAATTTTCTTTTTGCAGTCTTTCAAGAACCAATAATGGCAGAGTGGAACGTTTTATTGCGACATTATGTAAAAAATCCAATTCCAACTTTTCAAATCCGTTTGGTTTGCTCTTTGCTTATAACAGTCGCAGATTCCATTAACTAGTAGTAGTACTGTTTACAGCTTTATCTTGTCTATGTAATGAATAATTGTGACGGTAAAATTTTAGATCTGTTCCTGGAACTTGGTCAGCTGTGCCTGTGTTTGAAGCCGGCCAGGATAAACCAATTTCTGCCTACCTGTTTACAGCCTTATCTTGTCTCTATGTGGGACTTTTAAGCACGTCATGAATCAAAGCATTGCCAATTTTGGTATTTCAAGAAACTTGCGTCCGATCACGAAGCAGAGCATGCCTTTTAGCCATTTGGATGAGAAAAGAAACCTTTTTGACACTCTAATTTTCCGTAAGAGAACCTTTCTGACGAATTTCTTTTGGACAAGTTTTACGATTTTTATGAACACCTAAAGCTGAAATGCACAACTACCAAGTCCAAGCCTATCGT

mRNA sequence

ATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAATAGCCGTGCGTTTCAAAGGTTTGCTGTGAGGACATCAAAGCAGATCGAGGATATATCCAACAAAGCTGCTCAGAAGAAGCAAGAACTTGCGGAACAAGTGAAAGATCTCTCCAAAAATTTTGATTCTTTCAAGAACCAATAATGGCAGAGTGGAACGTTTTATTGCGACATTATGTAAAAAATCCAATTCCAACTTTTCAAATCCGTTTGGTTTGCTCTTTGCTTATAACAGTCGCAGATTCCATTAACTAGTAGTAGTACTGTTTACAGCTTTATCTTGTCTATGTAATGAATAATTGTGACGGTAAAATTTTAGATCTGTTCCTGGAACTTGGTCAGCTGTGCCTGTGTTTGAAGCCGGCCAGGATAAACCAATTTCTGCCTACCTGTTTACAGCCTTATCTTGTCTCTATGTGGGACTTTTAAGCACGTCATGAATCAAAGCATTGCCAATTTTGGTATTTCAAGAAACTTGCGTCCGATCACGAAGCAGAGCATGCCTTTTAGCCATTTGGATGAGAAAAGAAACCTTTTTGACACTCTAATTTTCCGTAAGAGAACCTTTCTGACGAATTTCTTTTGGACAAGTTTTACGATTTTTATGAACACCTAAAGCTGAAATGCACAACTACCAAGTCCAAGCCTATCGT

Coding sequence (CDS)

ATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAATAGCCGTGCGTTTCAAAGGTTTGCTGTGAGGACATCAAAGCAGATCGAGGATATATCCAACAAAGCTGCTCAGAAGAAGCAAGAACTTGCGGAACAAGTGAAAGATCTCTCCAAAAATTTTGATTCTTTCAAGAACCAATAA

Protein sequence

MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ

Homology

[Close]

BLAST of Carg12467-RA vs. NCBI nr
Match: XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.7 bits (335), Expect = 6.5e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFDSFKNQ 72
          LSKNFDSFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of Carg12467-RA vs. NCBI nr
Match: XP_022983627.1 (uncharacterized protein LOC111482182 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAA+KKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFDSFKNQ 72
          LSKNFDSFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of Carg12467-RA vs. NCBI nr
Match: XP_038903248.1 (uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903250.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903251.1 uncharacterized protein LOC120089892 [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR FQRFAVRTSKQIE+ISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRTFQRFAVRTSKQIEEISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFDSFKNQ 72
          LSKNFDSFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of Carg12467-RA vs. NCBI nr
Match: XP_023527736.1 (uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 7.1e-27
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFMHRVVSYLVNEV+VNSLANSR FQRFAVRTSKQIEDISNKA+QKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVIVNSLANSRTFQRFAVRTSKQIEDISNKASQKKQELAEQVKD 60

Query: 61 LSKNFDSFKNQ 72
          LSKNFDSFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of Carg12467-RA vs. NCBI nr
Match: XP_022949523.1 (uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 uncharacterized protein LOC111470102 [Cucurbita maxima] >XP_023539748.1 uncharacterized protein LOC111800336 [Cucurbita pepo subsp. pepo] >KAG6596336.1 hypothetical protein SDJN03_09516, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027888.1 hypothetical protein SDJN02_09065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 4.6e-26
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFDSFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]

BLAST of Carg12467-RA vs. ExPASy TrEMBL
Match: A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFDSFKNQ 72
          LSKNFDSFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of Carg12467-RA vs. ExPASy TrEMBL
Match: A0A6J1IZW4 (uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.1e-28
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAA+KKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFDSFKNQ 72
          LSKNFDSFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of Carg12467-RA vs. ExPASy TrEMBL
Match: A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFDSFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]

BLAST of Carg12467-RA vs. ExPASy TrEMBL
Match: A0A6J1GCB5 (uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC111452848 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFDSFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]

BLAST of Carg12467-RA vs. ExPASy TrEMBL
Match: A0A0A0L9U5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.5e-26
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFDSFKN 71
           SKNFDSFKN
Sbjct: 61 FSKNFDSFKN 70

[Close]

BLAST of Carg12467-RA vs. TAIR 10
Match: AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 3.5e-16
Identity = 39/67 (58.21%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 3  GGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLS 62
          GGNF+ RV+SY+ NE +VN LANS AFQRFAVRTSK+IE++S  AA+ ++++A+Q+++ +
Sbjct: 4  GGNFIARVISYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFA 63

Query: 63 KNFDSFK 70
          KN DS K
Sbjct: 64 KNIDSTK 70

The following BLAST results are available for this feature:

BLAST of Carg12467-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935686.1	6.5e-28	100.00	uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet...	[more]
XP_022983627.1	1.9e-27	98.59	uncharacterized protein LOC111482182 [Cucurbita maxima]	[more]
XP_038903248.1	5.5e-27	97.18	uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 unchara...	[more]
XP_023527736.1	7.1e-27	95.77	uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo]	[more]
XP_022949523.1	4.6e-26	94.37	uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 unchar...	[more]

BLAST of Carg12467-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12467-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5E7	3.1e-28	100.00	uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A6J1IZW4	9.1e-28	98.59	uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182...	[more]
A0A6J1I5H8	2.2e-26	94.37	uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102...	[more]
A0A6J1GCB5	2.2e-26	94.37	uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A0A0L9U5	6.5e-26	94.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1	[more]

BLAST of Carg12467-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01350.1	3.5e-16	58.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..71
None	No IPR available	PANTHER	PTHR34966	OSJNBA0043L24.15 PROTEIN	coord: 1..71

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12467	Carg12467	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12467-RA:4	Carg12467-RA:4	exon
Carg12467-RA:3	Carg12467-RA:3	exon
Carg12467-RA:2	Carg12467-RA:2	exon
Carg12467-RA:1	Carg12467-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12467-RA:three_prime_utr	Carg12467-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12467-RA:cds	Carg12467-RA:cds_4	CDS
Carg12467-RA:cds	Carg12467-RA:cds_3	CDS
Carg12467-RA:cds	Carg12467-RA:cds_2	CDS
Carg12467-RA:cds	Carg12467-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12467-RA	Carg12467-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding