Carg12251-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12251-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Derlin
Location	Carg_Chr11: 2933430 .. 2936979 (-)
Sequence length	843
RNA-Seq Expression	Carg12251-RA
Synteny	Carg12251-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTAAGGTTTGTTCGTCTTCAAGCGGTGAAATTCTTTAAAGAAGACTGAGAGATCTCTAGTTCCAAAGCTGCTTCGAGTTTGATTTCTGCTTCTACAATGTCTTCTCCGGCCGAGTAATACTGCCTCTCCATTTCTATTTCCTGTTTGAAACTCAATTTTCGAATTCTGTATTTCGTTTCTCTGCTGTTCGATGCTGCAATTTGATTAGTTTTGATTTTTTTTTCTGATGTTCAATGTCTGCTGTCATGTTTAGTTTGATTTTAATCTGGAACCTGACCATTTTTTTTTTTTCACGATTCAGATATTACAACTCTCTTCCGCCTATAAGTAAGGTGTATGGAACCCTATGCCTTTTGGCGACTACAGCCTTCCAACTTGGCTTGTTAAATCCTAATTTTATTGTGTTGCATTTCGGACTCGTATTCAAGCGTTTTCAGGTATTGACTTGAATTTCCATAGGTGTCAGAATTTATCTGTTCAATTTTTGTTCTTTTTAAACATCTGCTAACTCTTGCTTTCATTAGTGTTTTTATTCTGTTTATCCAACATTCTTCTTGATCATTCTTTATCTTTCCAAGGGGCGTTGAATTTCATACTTATGAGTGGATATGGAATTCTTGGAATTCAATAATTTCCTGGTTGGTTGACTTTTCGGTTATATTCTCGATTGATAATTTTACGGAGGCGATAAATATCAGATAAAACTCAGAATTGGAAACAATGAATGAAGATGGGATTTATTTCGAAATGAATTCCATTATTCGGCTGAGATCAAAATAAATAAATTCTTAGTTAGTGCAAGGAATGTTAAGACTGATCGAGAATATTTTATTAGAAAAGTTATTGATGGGAACATTGGAATCATCTTTAACTTAACTTTTGAGGTAATGGTTCAAGTCTTTGATAGCGACTTTAGCAACTATGTAGTCAATTCTCCTCTTATTAATTAGTACTAATTTTCATTAGTGTGGGTTCCTTTGAACTCCAATAAAGGTTCTTCTTTTTGGTAGGAACTTTTGGCATTGGATAGTTTTGTCATTTTTCTCCATATCGTTTAATTGTGTCTTACTTTTCTAAAATAAGGTCATGGTCTTAAGCCAAAGGGACTTTCCATTTAGGATATCAAGGATTATACGATCTTTTTTAATGTCAAATCTTGTAAGGTAGGGCAATCATCCCATCGGACTGGACACCCTCAATGTTAATCTATCCTTCCGTACTTGTTCTGTATATTTCCGTAGTCTGGAGGTTATAAATCTCTTTAATTTTTGAAGTCCCTATTCCAAACAAGAGGAATAGAATTAGATATAGAACAGTTCAAATAAATTCAAAATGAAAGTTGACCGACAAATCTCTTCATCCTAAACCCGGTGAGGAATAGAAACTTGGTAAAATTTATTGCTCATTTTTAAGTTTTGTATGAAGCCTAATGGCATATTCTTTATCAAACGTCAATTTATGAAGTAAACAGTAAAGATATCTAAAAGCAGTAAAGGGAGATACACAAGAACCAGAGTTTTTACATGAAATCCAATCCAGGAAAATTATGGTAGAAACAAGTTAACTTATGCTATGGATTTTAAATTCTGACGAGAAGAATCTTTGCTCTTAGGGAAATGACACAACTTGTGAGGTTCTAAACGAGGTGTGTCTATTGCTGTTTGAGAATTAATGCTAAAAAGAAAAGAATTAGCAGTTATTGTTTCTTGAATCTCGTCAATATTTGCCTATAGAATCATTGTTTTTAATCTAGGAAGTTGGTCTTTCATATCAAAGGAAGTGGTTTTGAAAAAAATTGAGAGAACAGTATAAGTTTGGCCCCTCTCTCTCGCCTTTTTGTTTTTGTGGTGGAATTACTTGTGTTTATAAATTTAGGTCTAACAGCATCTGATTTTTCAGTGGAAATGACTGCCTCAAGTAAGTCATGAACTAGAACGTTCTTTACATCGAATATTCTTAAATGATGGATGCCTTTCCCTTTGCAGTAATTCTTTAATGTGAATTCCAATATAATCTTTCCATTACTATTATTAATATTTATCGAAGGTCACCTTTATTTTCAGGTATGGAGGCTATTCACAAACTTCTTCTTCCTTGGAAAATTCTCTATCAATTTTGGAATTCGTTTACTAATGATGTAAGTTTTTGTGTGTGATAACTTTTTTTTTTTTTTACATGAACTACTAGCAGTACTTTTTCATGAAGGTGAAGGGTTTGTGTTAAAACTTTCATAAAGGTTTATGATGCACTAATAGTTTTTGTGTTTGTGCCCTCACAGAGCAAGGTATGGTGTCCAACTTGAGAATGGACCATTTCAGAGGCGAACAGCAGACTTTCTATGGATGATGATATTTGGAGCCTTAACATTATTGGTGTGTGAAGATCTTTATTATGTTTTCCTTTAGATTGGCCCTTTTGTATTCTTTCACTTTTTGTTGGAAGCTTAGTTTTTTCGACAAAAAAGGTTTAGATGCAGCGGTTCTTTTCAGTTTTATCTGTTCGTACAAATAGTAGATTTTGCAGATGACACCTAATGGTTAAATTGTTTTATGTCATTTAGAAGTGATAATAATGTTATGAGGGAAAGATGTGTGAAAGGCCACCGGACTTTTGGTTGTTTTTTTCCTTGTTCCAAATTATTTTCATGGAACTTAAATCATTTTCCAACGGCTTTACTCTTTTGTATTTCTGTTCCTCGGGGATTTTTTTGTTTTCCTCATGAAATCCTCCCATCTAAGAGTTTTTACTTGTTGAACCTTTATTTTAGTTTGTGGATTTGTGCATATCAAAATGTATTTACGCTGATTTGTGACAAGCTTTCTTGTTATGGATACTTCCTCTTGTGTAGGTACTTTCTGCTATACCAATCTTCTATTCATCATTCTTAGGGATATCACTTGTGTTTATGCTTCTCTACGTCTGGAGTAGAGAATTTCCTACTGCGCAGATCAACATATATGGCCTTGTGACTCTTAAGGTACGACCAATAGCAATGATTTAGGTTTCAAATTATACCTTTTTTTCACCACGGGATTGTGTTTCTCAGTTCCTAATATCTGCATTACAAATGTAATGCTTTTTGTGCAGGCATTTTATCTGCCATGGGCCATGCTAGCGCTGGATGTCATTTTTGGTTCACCTCTTGTACCTGATTTACTTGGAATCTTAGCAGGGCATTTGTATTACTTCTTGACCGTGTTACATCCTCTGGCAGGCGGAAAGAACATATTGAAAACTCCATTTTGGGTGTATCCTTCCTCGCTTTGTTTTTTAACGACAAATGTTCCTTGCCTTGTTAGTTTGAGATTATCATGCATCTATAGTTATCACATCCCTCTGTTCTGCCTATTTATATACTATATATACTCATCCGTTGGGTTCATTGCTTGCCTTGCTTTTTATTCAGCATATCTTTAACAATTTCTACAGACAGAGGTTAGTATCAAGGTGGAGGATAGGAGCACCACCAATTCAACGTGCTGCAGTACCTGATGATAGGGGTACAAGTGGAGCTTTCAGAGGGAGGTCATATCGGCTCAATGGCTAA

mRNA sequence

TTGCTAAGGTTTGTTCGTCTTCAAGCGGTGAAATTCTTTAAAGAAGACTGAGAGATCTCTAGTTCCAAAGCTGCTTCGAGTTTGATTTCTGCTTCTACAATGTCTTCTCCGGCCGAATATTACAACTCTCTTCCGCCTATAAGTAAGGTGTATGGAACCCTATGCCTTTTGGCGACTACAGCCTTCCAACTTGGCTTGTTAAATCCTAATTTTATTGTGTTGCATTTCGGACTCGTATTCAAGCGTTTTCAGGTATGGAGGCTATTCACAAACTTCTTCTTCCTTGGAAAATTCTCTATCAATTTTGGAATTCGTTTACTAATGATAGCAAGGTATGGTGTCCAACTTGAGAATGGACCATTTCAGAGGCGAACAGCAGACTTTCTATGGATGATGATATTTGGAGCCTTAACATTATTGGTGTGTGAAGATCTTTATTATGTACTTTCTGCTATACCAATCTTCTATTCATCATTCTTAGGGATATCACTTGTGTTTATGCTTCTCTACGTCTGGAGTAGAGAATTTCCTACTGCGCAGATCAACATATATGGCCTTGTGACTCTTAAGGCATTTTATCTGCCATGGGCCATGCTAGCGCTGGATGTCATTTTTGGTTCACCTCTTGTACCTGATTTACTTGGAATCTTAGCAGGGCATTTGTATTACTTCTTGACCGTGTTACATCCTCTGGCAGGCGGAAAGAACATATTGAAAACTCCATTTTGGAGGTTAGTATCAAGGTGGAGGATAGGAGCACCACCAATTCAACGTGCTGCAGTACCTGATGATAGGGGTACAAGTGGAGCTTTCAGAGGGAGGTCATATCGGCTCAATGGCTAA

Coding sequence (CDS)

ATGTCTTCTCCGGCCGAATATTACAACTCTCTTCCGCCTATAAGTAAGGTGTATGGAACCCTATGCCTTTTGGCGACTACAGCCTTCCAACTTGGCTTGTTAAATCCTAATTTTATTGTGTTGCATTTCGGACTCGTATTCAAGCGTTTTCAGGTATGGAGGCTATTCACAAACTTCTTCTTCCTTGGAAAATTCTCTATCAATTTTGGAATTCGTTTACTAATGATAGCAAGGTATGGTGTCCAACTTGAGAATGGACCATTTCAGAGGCGAACAGCAGACTTTCTATGGATGATGATATTTGGAGCCTTAACATTATTGGTGTGTGAAGATCTTTATTATGTACTTTCTGCTATACCAATCTTCTATTCATCATTCTTAGGGATATCACTTGTGTTTATGCTTCTCTACGTCTGGAGTAGAGAATTTCCTACTGCGCAGATCAACATATATGGCCTTGTGACTCTTAAGGCATTTTATCTGCCATGGGCCATGCTAGCGCTGGATGTCATTTTTGGTTCACCTCTTGTACCTGATTTACTTGGAATCTTAGCAGGGCATTTGTATTACTTCTTGACCGTGTTACATCCTCTGGCAGGCGGAAAGAACATATTGAAAACTCCATTTTGGAGGTTAGTATCAAGGTGGAGGATAGGAGCACCACCAATTCAACGTGCTGCAGTACCTGATGATAGGGGTACAAGTGGAGCTTTCAGAGGGAGGTCATATCGGCTCAATGGCTAA

Protein sequence

MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFFFLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIPIFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGHLYYFLTVLHPLAGGKNILKTPFWRLVSRWRIGAPPIQRAAVPDDRGTSGAFRGRSYRLNG

Homology

[Close]

BLAST of Carg12251-RA vs. NCBI nr
Match: KAG7021903.1 (Derlin-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 497.3 bits (1279), Expect = 7.7e-137
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF
Sbjct: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFWRLVSRWRIGAPPIQRAAVPDDRGTSGAFRG 240
           LGILAGHLYYFLTVLHPLAGGKNILKTPFWRLVSRWRIGAPPIQRAAVPDDRGTSGAFRG
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFWRLVSRWRIGAPPIQRAAVPDDRGTSGAFRG 240

Query: 241 RSYRLNG 248
           RSYRLNG
Sbjct: 241 RSYRLNG 247

[Close]

BLAST of Carg12251-RA vs. NCBI nr
Match: KAG6588009.1 (Derlin-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 469.5 bits (1207), Expect = 1.7e-128
Identity = 240/249 (96.39%), Postives = 240/249 (96.39%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF
Sbjct: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL       VLSAIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL-------VLSAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVPDDRGTSGAF 240
           LGILAGHLYYFLTVLHPLAGGKNILKTPFW  RLVSRWRIGAPPIQRAAVPDDRGTSGAF
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQRAAVPDDRGTSGAF 240

Query: 241 RGRSYRLNG 248
           RGRSYRLNG
Sbjct: 241 RGRSYRLNG 242

[Close]

BLAST of Carg12251-RA vs. NCBI nr
Match: XP_022931760.1 (derlin-1-like [Cucurbita moschata])

HSP 1 Score: 465.3 bits (1196), Expect = 3.3e-127
Identity = 238/249 (95.58%), Postives = 238/249 (95.58%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYYNSLPPISK YGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL       VLSAIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL-------VLSAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVPDDRGTSGAF 240
           LGILAGHLYYFLTVLHPLAGGKNILKTPFW  RLVSRWRIGAPPIQRAAVPD RGTSGAF
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQRAAVPDGRGTSGAF 240

Query: 241 RGRSYRLNG 248
           RGRSYRLNG
Sbjct: 241 RGRSYRLNG 242

[Close]

BLAST of Carg12251-RA vs. NCBI nr
Match: XP_023531299.1 (derlin-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 464.5 bits (1194), Expect = 5.6e-127
Identity = 236/249 (94.78%), Postives = 237/249 (95.18%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYYNSLPPISK YGTLCLLATT FQLGLLNPNFI LHFGL+FKRFQVWRLFTNFF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCLLATTVFQLGLLNPNFIALHFGLIFKRFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL       VLSAIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL-------VLSAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVPDDRGTSGAF 240
           LGILAGHLYYFLTVLHPLAGGKNILKTPFW  RLVSRWRIGAPPIQRAAVPDDRGTSGAF
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQRAAVPDDRGTSGAF 240

Query: 241 RGRSYRLNG 248
           RGRSYRLNG
Sbjct: 241 RGRSYRLNG 242

[Close]

BLAST of Carg12251-RA vs. NCBI nr
Match: XP_023005455.1 (derlin-1-like [Cucurbita maxima])

HSP 1 Score: 461.8 bits (1187), Expect = 3.6e-126
Identity = 235/249 (94.38%), Postives = 236/249 (94.78%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYYNSLPPISK YGTLCLLATTAFQLGLLNP F  LHFGL+FKRFQVWRLFTNFF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL       VLSAIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL-------VLSAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVPDDRGTSGAF 240
           LGILAGHLYYFLTVLHPLAGGKNILKTPFW  RLVSRWRIGAPPIQRAAVPDDRGTSGAF
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQRAAVPDDRGTSGAF 240

Query: 241 RGRSYRLNG 248
           RGRSYRLNG
Sbjct: 241 RGRSYRLNG 242

[Close]

BLAST of Carg12251-RA vs. ExPASy Swiss-Prot
Match: Q8VZU9 (Derlin-1 OS=Arabidopsis thaliana OX=3702 GN=DER1 PE=2 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 8.7e-91
Identity = 181/271 (66.79%), Postives = 200/271 (73.80%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSP E+YNSLPPI+K YGTLC   T A QLGL+ P  I L   LV K+FQ+WRL TN F
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLG FSINFGIRLLMIARYGVQLE GPF+RRTADFLWMMIFG+ TLL       VLS IP
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLL-------VLSVIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
            F++ FLG+SLVFMLLY+WSREFP A I++YGLVTLKAFYLPWAMLALDVIFGSP++PDL
Sbjct: 121 FFWTPFLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQ-------RAAVPDD 240
           LGI+AGHLYYFLTVLHPLA GKN LKTP W  ++V+RWRIGAP           AA P  
Sbjct: 181 LGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGA 240

Query: 241 RGTSG-----------------AFRGRSYRL 246
            G  G                 AFRGRSYRL
Sbjct: 241 GGGVGGGGAYSSARAPPESSNTAFRGRSYRL 264

[Close]

BLAST of Carg12251-RA vs. ExPASy Swiss-Prot
Match: Q06397 (Derlin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=DER1 PE=2 SV=2)

HSP 1 Score: 325.9 bits (834), Expect = 4.0e-88
Identity = 169/251 (67.33%), Postives = 198/251 (78.88%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYYNSLPPISK YGTLC  AT   QL +LNP F+ L++  VFK+FQ+WRLFT+FF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLE G F++RTADFLWMMIFGA++LL        LSAIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLL-------ALSAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
                FLG+ +V MLLYVWSRE+P +QI++YGLV L++FYLPWAML LDVIFGS ++P L
Sbjct: 121 FLDIYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGA---PPIQRAAVPDDRGTS 240
           LGIL GH YYFL+VLHPLA GKN LKTP W  ++V+R+RIG     P++ AA       S
Sbjct: 181 LGILVGHTYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAA---NTGS 240

Query: 241 GAFRGRSYRLN 247
           GAFRGRSYRL+
Sbjct: 241 GAFRGRSYRLS 241

[Close]

BLAST of Carg12251-RA vs. ExPASy Swiss-Prot
Match: Q4G2J5 (Derlin-1.2 OS=Zea mays OX=4577 GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.0e-84
Identity = 165/250 (66.00%), Postives = 191/250 (76.40%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYY SLPPISK YGTLC   T   +L +LNP F+ L++  VFK+F+VWR+FT+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLG FSINFGIRLLMIARYGV LE G F +RTADFLWMMIFGA++LL       VLS IP
Sbjct: 61  FLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLL-------VLSVIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
              +  LG+ +V ML+YVWSRE P AQINIYG++ LKAFYLPW ML LDVIFGSPL+P L
Sbjct: 121 QLNTYVLGLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIG--APPIQRAAVPDDRGTSG 240
           LGI+ GHLYY+  VLHPLA GKN LKTP W  ++V+R+RIG  A    RA    + GT G
Sbjct: 181 LGIMVGHLYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGT-G 240

Query: 241 AFRGRSYRLN 247
           AFRGRSYRLN
Sbjct: 241 AFRGRSYRLN 242

[Close]

BLAST of Carg12251-RA vs. ExPASy Swiss-Prot
Match: Q4G2J6 (Derlin-1.1 OS=Zea mays OX=4577 GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 310.1 bits (793), Expect = 2.3e-83
Identity = 163/249 (65.46%), Postives = 187/249 (75.10%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYY SLPPISK YGTLC   T   QL +L+P F+ L + LVFK+F++WRL T+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FL  FS+ FGIRLLMIARYGV LE G F +RTADFLWMMIFGA++LL       VLS IP
Sbjct: 61  FLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLL-------VLSIIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           +F S FLGI +V MLLYVWSRE P AQINIYGLV L++FYLPWAML LDVIFGS L+P L
Sbjct: 121 LFNSFFLGIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVP-DDRGTSGA 240
           LGI+ GHLYYF  VLHPLA GK+ LKTP W  ++V+R+RIG         P +    SG 
Sbjct: 181 LGIMVGHLYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGV 240

Query: 241 FRGRSYRLN 247
           FRGRSYRLN
Sbjct: 241 FRGRSYRLN 242

[Close]

BLAST of Carg12251-RA vs. ExPASy Swiss-Prot
Match: Q54NN1 (Probable derlin-2 homolog OS=Dictyostelium discoideum OX=44689 GN=derl2 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-38
Identity = 86/210 (40.95%), Postives = 127/210 (60.48%), Query Frame = 0


Query: 1   MSSPAE-YYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNF 60
           M+ P E +Y +LP ++K+Y T C++ + +  LGL+ P  + L+F LVF +++ WRLFTNF
Sbjct: 1   MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNF 60

Query: 61  FFLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCED-LYYVLSA 120
           FF  +  +NF   +  + R+   LE   F+ R+AD+L+M IFG+  LL+ +  L+Y    
Sbjct: 61  FFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIV 120

Query: 121 IPIFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVP 180
             +    FL  S+ FM++YVWSR  P   I+  GL T  A YLPW +L +  +F   L  
Sbjct: 121 TKVL---FLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTT 180

Query: 181 DLLGILAGHLYYFLTVLHPLAGGKNILKTP 209
           DLLG +AGH YYFL   +PL   + +LKTP
Sbjct: 181 DLLGAVAGHAYYFLEDAYPLISNRRLLKTP 207

[Close]

BLAST of Carg12251-RA vs. ExPASy TrEMBL
Match: A0A6J1F0C5 (Derlin OS=Cucurbita moschata OX=3662 GN=LOC111438027 PE=3 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 238/249 (95.58%), Postives = 238/249 (95.58%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYYNSLPPISK YGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL       VLSAIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL-------VLSAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVPDDRGTSGAF 240
           LGILAGHLYYFLTVLHPLAGGKNILKTPFW  RLVSRWRIGAPPIQRAAVPD RGTSGAF
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQRAAVPDGRGTSGAF 240

Query: 241 RGRSYRLNG 248
           RGRSYRLNG
Sbjct: 241 RGRSYRLNG 242

[Close]

BLAST of Carg12251-RA vs. ExPASy TrEMBL
Match: A0A6J1KXG1 (Derlin OS=Cucurbita maxima OX=3661 GN=LOC111498433 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.7e-126
Identity = 235/249 (94.38%), Postives = 236/249 (94.78%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAEYYNSLPPISK YGTLCLLATTAFQLGLLNP F  LHFGL+FKRFQVWRLFTNFF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL       VLSAIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLL-------VLSAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVPDDRGTSGAF 240
           LGILAGHLYYFLTVLHPLAGGKNILKTPFW  RLVSRWRIGAPPIQRAAVPDDRGTSGAF
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQRAAVPDDRGTSGAF 240

Query: 241 RGRSYRLNG 248
           RGRSYRLNG
Sbjct: 241 RGRSYRLNG 242

[Close]

BLAST of Carg12251-RA vs. ExPASy TrEMBL
Match: A0A5D3CDT1 (Derlin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002800 PE=3 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.9e-117
Identity = 221/249 (88.76%), Postives = 227/249 (91.16%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAE+YNSLPPISK YGTLCLLATTAFQLGL +P  I L +GLVFK FQVWRLFTNFF
Sbjct: 1   MSSPAEFYNSLPPISKAYGTLCLLATTAFQLGLYDPMLIALDYGLVFKHFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFG LTLL       VL+AIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGGLTLL-------VLAAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IF    LGISLVFMLLYVWSREFP AQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFRFPVLGISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVPDDRGTSGAF 240
           LGILAGHLYYFLTVLHPLAGGKNIL+TPFW  RLVSRWRIGAPP+QRAAVPDDRGTSGAF
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILRTPFWIQRLVSRWRIGAPPMQRAAVPDDRGTSGAF 240

Query: 241 RGRSYRLNG 248
           RGRSYRLNG
Sbjct: 241 RGRSYRLNG 242

[Close]

BLAST of Carg12251-RA vs. ExPASy TrEMBL
Match: A0A1S3BQ27 (Derlin OS=Cucumis melo OX=3656 GN=LOC103492274 PE=3 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.9e-117
Identity = 221/249 (88.76%), Postives = 227/249 (91.16%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAE+YNSLPPISK YGTLCLLATTAFQLGL +P  I L +GLVFK FQVWRLFTNFF
Sbjct: 1   MSSPAEFYNSLPPISKAYGTLCLLATTAFQLGLYDPMLIALDYGLVFKHFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFG LTLL       VL+AIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGGLTLL-------VLAAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IF    LGISLVFMLLYVWSREFP AQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFRFPVLGISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVPDDRGTSGAF 240
           LGILAGHLYYFLTVLHPLAGGKNIL+TPFW  RLVSRWRIGAPP+QRAAVPDDRGTSGAF
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILRTPFWIQRLVSRWRIGAPPMQRAAVPDDRGTSGAF 240

Query: 241 RGRSYRLNG 248
           RGRSYRLNG
Sbjct: 241 RGRSYRLNG 242

[Close]

BLAST of Carg12251-RA vs. ExPASy TrEMBL
Match: A0A0A0LZA3 (Derlin OS=Cucumis sativus OX=3659 GN=Csa_1G575080 PE=3 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.3e-117
Identity = 220/249 (88.35%), Postives = 227/249 (91.16%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSPAE+YNSLPPISK YGTLC LATTAFQLGL +P  I L +GLVFK FQVWRLFTNFF
Sbjct: 1   MSSPAEFYNSLPPISKAYGTLCFLATTAFQLGLYDPMLIALDYGLVFKHFQVWRLFTNFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFG+LTLL       VL+AIP
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGSLTLL-------VLAAIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
           IF    LGISLVFMLLYVWSREFP AQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL
Sbjct: 121 IFQFPVLGISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQRAAVPDDRGTSGAF 240
           LGILAGHLYYFLTVLHPLAGGKNIL+TPFW  RLVSRWRIGAPP+QRAAVPDDRGTSGAF
Sbjct: 181 LGILAGHLYYFLTVLHPLAGGKNILRTPFWIQRLVSRWRIGAPPMQRAAVPDDRGTSGAF 240

Query: 241 RGRSYRLNG 248
           RGRSYRLNG
Sbjct: 241 RGRSYRLNG 242

[Close]

BLAST of Carg12251-RA vs. TAIR 10
Match: AT4G29330.1 (DERLIN-1 )

HSP 1 Score: 334.7 bits (857), Expect = 6.2e-92
Identity = 181/271 (66.79%), Postives = 200/271 (73.80%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFF 60
           MSSP E+YNSLPPI+K YGTLC   T A QLGL+ P  I L   LV K+FQ+WRL TN F
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIP 120
           FLG FSINFGIRLLMIARYGVQLE GPF+RRTADFLWMMIFG+ TLL       VLS IP
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLL-------VLSVIP 120

Query: 121 IFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
            F++ FLG+SLVFMLLY+WSREFP A I++YGLVTLKAFYLPWAMLALDVIFGSP++PDL
Sbjct: 121 FFWTPFLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFW--RLVSRWRIGAPPIQ-------RAAVPDD 240
           LGI+AGHLYYFLTVLHPLA GKN LKTP W  ++V+RWRIGAP           AA P  
Sbjct: 181 LGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGA 240

Query: 241 RGTSG-----------------AFRGRSYRL 246
            G  G                 AFRGRSYRL
Sbjct: 241 GGGVGGGGAYSSARAPPESSNTAFRGRSYRL 264

[Close]

BLAST of Carg12251-RA vs. TAIR 10
Match: AT4G04860.1 (DERLIN-2.2 )

HSP 1 Score: 142.9 bits (359), Expect = 3.5e-34
Identity = 78/208 (37.50%), Postives = 119/208 (57.21%), Query Frame = 0


Query: 6   EYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFFFLGKF 65
           E+Y  +P I++ Y T  ++ T    L +++P  + L+  LV K++Q WRL TNF +  K 
Sbjct: 7   EWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIPIFYSS 125
            ++F   +  +ARY   LE   F+ +TADFL+M++FGA  L     +  +   IP   +S
Sbjct: 67  DLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVL---TGIVLIGGMIPYLSAS 126

Query: 126 -----FLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 185
                FL  SL FM++YVWS++ P   ++  GL T  A YLPW +L   ++ G+    DL
Sbjct: 127 FAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDL 186

Query: 186 LGILAGHLYYFLTVLHPLAGGKNILKTP 209
           LG++AGH YYFL  ++P    +  LKTP
Sbjct: 187 LGMIAGHAYYFLAEVYPRMTNRRPLKTP 211

[Close]

BLAST of Carg12251-RA vs. TAIR 10
Match: AT4G21810.1 (DERLIN-2.1 )

HSP 1 Score: 140.6 bits (353), Expect = 1.7e-33
Identity = 75/205 (36.59%), Postives = 119/205 (58.05%), Query Frame = 0


Query: 6   EYYNSLPPISKVYGTLCLLATTAFQLGLLNPNFIVLHFGLVFKRFQVWRLFTNFFFLGKF 65
           E+Y  +P I++ Y T  ++ T    L +++P  + L+  LV K++Q WRL TNF +  K 
Sbjct: 7   EWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVCEDLYYVLSAIPIFYSS 125
            ++F   +  +ARY   LE   F+ +TADFL+M++FGA  L     +  ++  + + +S 
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYLSVSFSK 126

Query: 126 --FLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI 185
             FL  SL FM++YVWS++ P   ++  GL T  A YLPW +L   ++ G+    D LG+
Sbjct: 127 IIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGM 186

Query: 186 LAGHLYYFLTVLHPLAGGKNILKTP 209
           +AGH YYFL  ++P    +  LKTP
Sbjct: 187 IAGHAYYFLAFVYPRMTDRRPLKTP 211

The following BLAST results are available for this feature:

BLAST of Carg12251-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021903.1	7.7e-137	100.00	Derlin-1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588009.1	1.7e-128	96.39	Derlin-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022931760.1	3.3e-127	95.58	derlin-1-like [Cucurbita moschata]	[more]
XP_023531299.1	5.6e-127	94.78	derlin-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005455.1	3.6e-126	94.38	derlin-1-like [Cucurbita maxima]	[more]

BLAST of Carg12251-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZU9	8.7e-91	66.79	Derlin-1 OS=Arabidopsis thaliana OX=3702 GN=DER1 PE=2 SV=1	[more]
Q06397	4.0e-88	67.33	Derlin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=DER1 PE=2 SV=2	[more]
Q4G2J5	6.0e-84	66.00	Derlin-1.2 OS=Zea mays OX=4577 GN=DER1.2 PE=2 SV=1	[more]
Q4G2J6	2.3e-83	65.46	Derlin-1.1 OS=Zea mays OX=4577 GN=DER1.1 PE=2 SV=2	[more]
Q54NN1	1.3e-38	40.95	Probable derlin-2 homolog OS=Dictyostelium discoideum OX=44689 GN=derl2 PE=3 SV=...	[more]

BLAST of Carg12251-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0C5	1.6e-127	95.58	Derlin OS=Cucurbita moschata OX=3662 GN=LOC111438027 PE=3 SV=1	[more]
A0A6J1KXG1	1.7e-126	94.38	Derlin OS=Cucurbita maxima OX=3661 GN=LOC111498433 PE=3 SV=1	[more]
A0A5D3CDT1	1.9e-117	88.76	Derlin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002800 PE=3 SV...	[more]
A0A1S3BQ27	1.9e-117	88.76	Derlin OS=Cucumis melo OX=3656 GN=LOC103492274 PE=3 SV=1	[more]
A0A0A0LZA3	3.3e-117	88.35	Derlin OS=Cucumis sativus OX=3659 GN=Csa_1G575080 PE=3 SV=1	[more]

BLAST of Carg12251-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29330.1	6.2e-92	66.79	DERLIN-1	[more]
AT4G04860.1	3.5e-34	37.50	DERLIN-2.2	[more]
AT4G21810.1	1.7e-33	36.59	DERLIN-2.1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007599	Derlin	PFAM	PF04511	DER1	coord: 11..208 e-value: 5.0E-46 score: 157.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..247
None	No IPR available	PANTHER	PTHR11009	DER1-LIKE PROTEIN, DERLIN	coord: 1..246
None	No IPR available	PANTHER	PTHR11009:SF32	DERLIN-1	coord: 1..246
IPR035952	Rhomboid-like superfamily	SUPERFAMILY	144091	Rhomboid-like	coord: 9..193

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12251	Carg12251	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12251-RA:7	Carg12251-RA:7	exon
Carg12251-RA:6	Carg12251-RA:6	exon
Carg12251-RA:5	Carg12251-RA:5	exon
Carg12251-RA:4	Carg12251-RA:4	exon
Carg12251-RA:3	Carg12251-RA:3	exon
Carg12251-RA:2	Carg12251-RA:2	exon
Carg12251-RA:1	Carg12251-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12251-RA:cds	Carg12251-RA:cds_7	CDS
Carg12251-RA:cds	Carg12251-RA:cds_6	CDS
Carg12251-RA:cds	Carg12251-RA:cds_5	CDS
Carg12251-RA:cds	Carg12251-RA:cds_4	CDS
Carg12251-RA:cds	Carg12251-RA:cds_3	CDS
Carg12251-RA:cds	Carg12251-RA:cds_2	CDS
Carg12251-RA:cds	Carg12251-RA:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12251-RA:five_prime_utr	Carg12251-RA:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12251-RA	Carg12251-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
cellular_component	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0051787	misfolded protein binding
molecular_function	GO:1990381	ubiquitin-specific protease binding