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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGAACGAAAAGGTTCATTTCATCCCCCTGTTTATCTTTTTATCAGTCATAGATGTATAATCAAGATTGCTCGAGAATGTTTACCAAGTTTTTATTATCAAATCGATTAAGCTTTCCTTCCGTGGTACCTCTCCATTTGTTTGGAATTTGAAAGCCATTGAGCTTTTTTACTCCAATGAGATGTGCAATATGCATTGTGAGACTATTCATTTCTTATGCTAATCCTTGACCTTATAACCGATATTATATGTGGCTGGATAATATCTTTTCAATGATTCAATTGGAGACTACATGGAAACAAAAGCTTTCTATATACCATGGTGGCCATCTGGTGAGTGAGTTGATTTAATCGTTCGGTTTTAATGTTTTTTACTCGTACGTTGTGGCCTTTTCATTTATTGGAGCTGAAACAAAGCTGAATGATTGAGCTAAAAAGGCATAAACAAGATATGTACAGAAATACTTTTGGTCGTCATCATCAATGAATTTGATGCATATGAATGGAATTTTGTTTCTTATGGCCTTTTTAAGTCTTATTTACACATTCGTTGTAGAGTTGTTCTGCAGGGAATTTGTGTTTCATGTTAATCATGAGATTCCTTTGTTGAGTTTGGATTTGAGACATATGTTTGTTCTCTTGTTTCTCTCTTGTGCAGATAGGTTCTATTGTTAAGTTAGAGCTGCAAGGCAAGGTTGGTTCATCTGCCATTAACTCAACTTATTTGTATTTCAAATGTTTTGCTTCTGCTTCTGAAGATGACCATAAAACGACGGTGTCTGGTAGGTTGCACAGATTAGATGGTTGTGTTGATATTATATCTGGGACTGGGAACTTAGGTAGTATAAATTAAGACTAATGTGTTGTGTTGTGTTGTGTTGATATAATACTTTTCTGTCTCAAACTGTTGAAGCTATGACATATGGACCTATGTTGATACATTTTTTCATAATATTTTTTGTGATTCACATGAATTATTAAACGGATTGAAGCCCAGTCCTTTATGTCAATGGCTAAACATCATTCTAATCATCTATATCATTGCATCACAAAGTTGTTGCATTTGTGTCTGTGGTCGTCGACTTCCACCCCATTTCTCACGCATACCAACAAGTTCATTGAAATTCTCTCCCACAACCCACGGAAATGAGTTATTGG mRNA sequence ATGAACGAAAAGATAGGTTCTATTGTTAAGTTAGAGCTGCAAGGCAAGGTTGGTTCATCTGCCATTAACTCAACTTATTTGTATTTCAAATGTTTTGCTTCTGCTTCTGAAGATGACCATAAAACGACGGTGTCTGGTAGGTTGCACAGATTAGATGGTTGTGTTGATATTATATCTGGGACTGGGAACTTAGGTAGTATAAATTAAGACTAATGTGTTGTGTTGTGTTGTGTTGATATAATACTTTTCTGTCTCAAACTGTTGAAGCTATGACATATGGACCTATGTTGATACATTTTTTCATAATATTTTTTGTGATTCACATGAATTATTAAACGGATTGAAGCCCAGTCCTTTATGTCAATGGCTAAACATCATTCTAATCATCTATATCATTGCATCACAAAGTTGTTGCATTTGTGTCTGTGGTCGTCGACTTCCACCCCATTTCTCACGCATACCAACAAGTTCATTGAAATTCTCTCCCACAACCCACGGAAATGAGTTATTGG Coding sequence (CDS) ATGAACGAAAAGATAGGTTCTATTGTTAAGTTAGAGCTGCAAGGCAAGGTTGGTTCATCTGCCATTAACTCAACTTATTTGTATTTCAAATGTTTTGCTTCTGCTTCTGAAGATGACCATAAAACGACGGTGTCTGGTAGGTTGCACAGATTAGATGGTTGTGTTGATATTATATCTGGGACTGGGAACTTAGGTAGTATAAATTAA Protein sequence MNEKIGSIVKLELQGKVGSSAINSTYLYFKCFASASEDDHKTTVSGRLHRLDGCVDIISGTGNLGSIN
Homology
BLAST of Carg12158-RA vs. NCBI nr
Match: KAG7021812.1 (hypothetical protein SDJN02_15540, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 138.7 bits (348), Expect = 1.9e-29 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query: 1 MNEKIGSIVKLELQGKVGSSAINSTYLYFKCFASASEDDHKTTVSGRLHRLDGCVDIISG 60
MNEKIGSIVKLELQGKVGSSAINSTYLYFKCFASASEDDHKTTVSGRLHRLDGCVDIISG
Sbjct: 1 MNEKIGSIVKLELQGKVGSSAINSTYLYFKCFASASEDDHKTTVSGRLHRLDGCVDIISG 60
Query: 61 TGNLGSIN 69
TGNLGSIN
Sbjct: 61 TGNLGSIN 68
BLAST of Carg12158-RA vs. NCBI nr
Match: KAG6587925.1 (NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 120.9 bits (302), Expect = 4.1e-24 Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0
Query: 5 IGSIVKLELQGKVGSSAINSTYLYFKCFASASEDDHKTTVSGRLHRLDGCVDIISGTGNL 64
IGSIVKLELQGKVGSSAINST LYFKCFASASEDDHKTTVSGRLHRLDGCVDIISGTGNL
Sbjct: 21 IGSIVKLELQGKVGSSAINSTCLYFKCFASASEDDHKTTVSGRLHRLDGCVDIISGTGNL 80
Query: 65 GS 67
S
Sbjct: 81 AS 82
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7021812.1 | 1.9e-29 | 100.00 | hypothetical protein SDJN02_15540, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6587925.1 | 4.1e-24 | 96.77 | NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
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Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg12158 | Carg12158 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg12158-RA:1 | Carg12158-RA:1 | exon |
| Carg12158-RA:2 | Carg12158-RA:2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg12158-RA:cds | Carg12158-RA:cds | CDS |
| Carg12158-RA:cds | Carg12158-RA:cds_2 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg12158-RA:three_prime_utr | Carg12158-RA:three_prime_utr | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg12158-RA | Carg12158-RA-protein | polypeptide |
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