Carg11519-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11519-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein FAR1-RELATED SEQUENCE 5
Location	Carg_Chr17: 9465982 .. 9468768 (+)
Sequence length	1564
RNA-Seq Expression	Carg11519-RA
Synteny	Carg11519-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCCTTTCTTTTGAAGTTCGTGGAATATGCTAGTGGTCGATCCAATTGTTGAATCCCAGTAGTGGAACCATCCACAAGATCTTCAGCAAAATCATACCAACTTTTGTAATTTCAAGACCAGTTCCTTTTGACAAAATCTGTTGCTTATACTTCAAAATTAGTTCTCGCCGTCAAAAACCCACTTCTCCAATCGATCCAATACCATAACCATCTAAACAAAAAATTCAGGGTTCTCACAGTTCATCGGCAAGATTCTACGCCGTTGCATCTCTTCATCGTTTCAATGAGCGAAGGGGAAGAGATTTCAGTGAAAATCCACAGAACCCGACTCCCGTTTTGAGCCCAAGTTCACTTCAAACTTCAAGTATTTGCTCAGTTCAGTAGCGCGTCATCAGTTTTCTTCATTTAATCTTCGATTTGTGTGTAAAGCGCTGTCGACGGATTAGGAGTGTTTCTATTCAGTGAGTAATCATAATTCTGTTTTTGGGGTTTCGTTTTGTCATTCATTCTATGGTACTTTGCTGCTTGGATCCTGAAACGTTTCTAATTTACCGAATCTTTGATGTTGTTCTATCTAAGTTCATGCCCTAATCTGGCTGCTAATTGAATTTTCCCACATGTCGACTCTTGGGGTTGATTAAAGAGTAGGGCAGATTGTTGAAACTAGGCTGCATTTTCATTGTTCTACATAGTTGATTGATGTTTGTAGTACTATCTAGTTGGAGAATTGCTATATACTTGAATTATTTCACTTAGGTTCTTGATACTGATTCAAAAGAATGGCAATGGTTCATGTTTCACTTAGGTTCTCTATTGATTGATGCTGTTCTGATTGTTTTTCTTTTCCTGCTGTTTGAAGGAATGAAGTTACCTGTCATCCAGGTACAGCAGTGTCGATTTTGTTAATCCATTTTTTTGTTCTTGTTTGTGTAAACTTCTTTGTGCTTCACATCGTGAGTTGATGGAGTCAAACATGATCAAAAGCTTGTGTTGGGGAGTTTTCTTATCAATATGGCTTCTTTGAGATGAGTCCAATCATGGGATAAGATAGAAGAGTCGATTCTTTCTTATTTCCTTTTTTTAGTTTGAATGAATGGAGGATACCCGTGAGATCCCACATCGATTGGAGAGAGGAACAAGTGCCAACGAGAACGTTGGGCTCCGAAGGGGTGGATTGTGAGATCCCACGTTGATGAGAGAGGGGAACGAGTGTCAGCAAGAATGCTGGACCTTGAAAGGGGGTGGATTGTGAGATCTCACATCAGTTGGAGAGGGGAACAAGACTTTCTTTATAAGAGTGTGAAAACCTCTCCCTAGCAAACGCATTTTAACAACCTTGAAAGGAAGCCCGAAAGGGAAAGCCTAAAGAGGACAATATCTACTAGCGGTGGGCTTGGGTTGTTACAATATCTCATACTCAAATCATTGTTCCTTTATGCTTTTATTTATTTTTCAAAAGTTATATTTCCATATTTAACTTGATATTGGAAAAAGGGTACTTTGCAATCTGGAAGAGGTTACACTTGCTTTCAAATATGGACAATATAATAAATACTGCAATTGGCCTAGATTGATTGAGAATCATAACTAGTAAAGAAATTCGAGAGTGTACTGGTTATAATATCGTTTCCTATACGCTTTAAACTCGTTTGCAATGTTAGTAATGTTGATGAACGTGTTGCAGTGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAGATGCTGTGATACCATGCAAAAGGTTTCTTTGTTTCTTTGTTCATTGATTTTTTTTGAGTTAGAACATGTGGGGTGGGGTGAGGACTCAAATCTTTGACCTCATACTATCGAGGGGAGGATTTGAGACCTCCCCTTACTCCCTAGGATCACTCACGACGTTTCATGCCAAGTCGGTTACCTTTAGAACCAACCCTTGTGACCGAATAACTCGATACTAAAATGAACATCCTTACTTTTACGATACGAGATAGAAGGATATGTATCTAGGGGAGATTCGAGAGTTCTCCTTACTCCCCGTGATCGCTTACCAAAAGTCCATCTCTCTCCATATAGGAAGTGTGCTAAATAGTCATAGCCACTCACGACGTTCCATGCGAAAGTCGGTTCCTTTTGCAACCATCCCTTGTGCCCAAATAGCTCTAATAATAAACTGAACCTCTTTACTCTAACCGGGCATAGAGGGATATGTAACCAAGGGAAGATTTGAGAGTTCCCCATACTCCCCATGATCACTTACCAAAAGTTAGCCCTTCTCCGTACCGAAAGTACGCTAGACAGCTATAGCCACTAACAATGTTCCATGTCAAAGTAAGTTTGTTTGTGACGGTC

mRNA sequence

TCCTTCCTTTCTTTTGAAGTTCGTGGAATATGCTAGTGGTCGATCCAATTGTTGAATCCCAGTAGTGGAACCATCCACAAGATCTTCAGCAAAATCATACCAACTTTTGTAATTTCAAGACCAGTTCCTTTTGACAAAATCTGTTGCTTATACTTCAAAATTAGTTCTCGCCGTCAAAAACCCACTTCTCCAATCGATCCAATACCATAACCATCTAAACAAAAAATTCAGGGTTCTCACAGTTCATCGGCAAGATTCTACGCCGTTGCATCTCTTCATCGTTTCAATGAGCGAAGGGGAAGAGATTTCAGTGAAAATCCACAGAACCCGACTCCCGTTTTGAGCCCAAGTTCACTTCAAACTTCAAGTATTTGCTCAGTTCAGTAGCGCGTCATCAGTTTTCTTCATTTAATCTTCGATTTGTGTGTAAAGCGCTGTCGACGGATTAGGAGTGTTTCTATTCATGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAGATGCTGTGATACCATGCAAAAGGTTTCTTTGTTTCTTTGTTCATTGATTTTTTTTGAGTTAGAACATGTGGGGTGGGGTGAGGACTCAAATCTTTGACCTCATACTATCGAGGGGAGGATTTGAGACCTCCCCTTACTCCCTAGGATCACTCACGACGTTTCATGCCAAGTCGGTTACCTTTAGAACCAACCCTTGTGACCGAATAACTCGATACTAAAATGAACATCCTTACTTTTACGATACGAGATAGAAGGATATGTATCTAGGGGAGATTCGAGAGTTCTCCTTACTCCCCGTGATCGCTTACCAAAAGTCCATCTCTCTCCATATAGGAAGTGTGCTAAATAGTCATAGCCACTCACGACGTTCCATGCGAAAGTCGGTTCCTTTTGCAACCATCCCTTGTGCCCAAATAGCTCTAATAATAAACTGAACCTCTTTACTCTAACCGGGCATAGAGGGATATGTAACCAAGGGAAGATTTGAGAGTTCCCCATACTCCCCATGATCACTTACCAAAAGTTAGCCCTTCTCCGTACCGAAAGTACGCTAGACAGCTATAGCCACTAACAATGTTCCATGTCAAAGTAAGTTTGTTTGTGACGGTC

Coding sequence (CDS)

ATGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAG

Protein sequence

MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGFNSSVSYSDSLTYVLCFMFDKRTVLN

Homology

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BLAST of Carg11519-RA vs. NCBI nr
Match: KAG7014578.1 (Protein FAR1-RELATED SEQUENCE 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.7 bits (857), Expect = 4.4e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSSVSYSDSLTYVLCFMFDKRTVLN 164
           TRFVKDHNHPLVVCSNGFNSSVSYSDSLTYVLCFMFDKRTVLN
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSSVSYSDSLTYVLCFMFDKRTVLN 163

[Close]

BLAST of Carg11519-RA vs. NCBI nr
Match: XP_023548849.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

[Close]

BLAST of Carg11519-RA vs. NCBI nr
Match: XP_022953365.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita moschata] >XP_022953366.1 protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

[Close]

BLAST of Carg11519-RA vs. NCBI nr
Match: KAG6576061.1 (Protein FAR1-RELATED SEQUENCE 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 22  MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 81

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 82  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 141

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 142 TRFVKDHNHPLVVCSNGFNSS 162

[Close]

BLAST of Carg11519-RA vs. NCBI nr
Match: XP_022991543.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita maxima] >XP_022991544.1 protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

[Close]

BLAST of Carg11519-RA vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.3e-22
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 27  LEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGF-SPN 86
           LEPY G+EF+SE+AA+ FY  YAR++GF  R+   RRS  DG  + R+  C K+GF + N
Sbjct: 71  LEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMN 130

Query: 87  HRGIYGLD-KKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 133
            +     + K+ R   R GCKA++ VKM+ SGKW+V+ FVKDHNH LV
Sbjct: 131 EKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178

[Close]

BLAST of Carg11519-RA vs. ExPASy Swiss-Prot
Match: Q3E7I5 (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 22  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 81
           EG   +EPYVG+EFD+ + AR+FY  YA + GF VR  Q  RS  DG   +RR  C+K+G
Sbjct: 36  EGGSGVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEG 95

Query: 82  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 132
           F  N              +R GC A I V+   +GKWV+ +  K+HNH L
Sbjct: 96  FQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131

[Close]

BLAST of Carg11519-RA vs. ExPASy Swiss-Prot
Match: Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 22  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 81
           EG+  LEPYVG+EFD+ + AR +Y  YA + GF VR  Q  RS  DG   +RR  C+K+G
Sbjct: 21  EGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEG 80

Query: 82  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 132
           F  N              +R GC A I V+   +GKWV+ +  K+HNH L
Sbjct: 81  FQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 116

[Close]

BLAST of Carg11519-RA vs. ExPASy Swiss-Prot
Match: Q9SWG3 (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 23  GNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGF 82
           G++ LEP  G++FD+ +AA  FY EYA+ MGF   I   RRS      +  +  C++ G 
Sbjct: 45  GDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGV 104

Query: 83  SPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 133
           +P      G   +     +  CKA++ VK    GKW++  FVKDHNH L+
Sbjct: 105 TPESES-SGSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELL 153

[Close]

BLAST of Carg11519-RA vs. ExPASy Swiss-Prot
Match: Q3EBQ3 (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-13
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 32  GMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHRGIYG 91
           GM+F+S++AA  FY EYAR +GF + I   RRS   G+ +  ++ C++  F         
Sbjct: 41  GMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSR--FGTKREKATA 100

Query: 92  LDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGFNSSV 143
           ++ +S P  + GCKA + +K ++  KWV+  FVK+HNH   +C + F  SV
Sbjct: 101 INPRSCP--KTGCKAGLHMKRKEDEKWVIYNFVKEHNHE--ICPDDFYVSV 145

[Close]

BLAST of Carg11519-RA vs. ExPASy TrEMBL
Match: A0A6J1JWI8 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488124 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

[Close]

BLAST of Carg11519-RA vs. ExPASy TrEMBL
Match: A0A6J1GPF5 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455937 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

[Close]

BLAST of Carg11519-RA vs. ExPASy TrEMBL
Match: A0A0A0K5G0 (FAR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G375750 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.5e-73
Identity = 135/141 (95.74%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHN+IEVN HAA+GN++LEPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 517 MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 576

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 577 RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 636

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 637 TRFVKDHNHPLVVCSNGFNSS 657

[Close]

BLAST of Carg11519-RA vs. ExPASy TrEMBL
Match: A0A1S3BS39 (protein FAR1-RELATED SEQUENCE 5 OS=Cucumis melo OX=3656 GN=LOC103492594 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.1e-71
Identity = 132/141 (93.62%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHN++EVN  AA+GNV+ EPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNSVEVNTDAADGNVVSEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSP+HRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPSHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

[Close]

BLAST of Carg11519-RA vs. ExPASy TrEMBL
Match: A0A6J1CQQ3 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013448 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.9e-71
Identity = 133/141 (94.33%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHN+IEVN  AAEGNV LEPYVGMEFDSEDAARKFY EYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNSIEVNTDAAEGNVTLEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYG DKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGSDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLV CSNGFN+S
Sbjct: 121 TRFVKDHNHPLVACSNGFNNS 141

[Close]

BLAST of Carg11519-RA vs. TAIR 10
Match: AT4G12850.2 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 161.0 bits (406), Expect = 8.1e-40
Identity = 80/130 (61.54%), Postives = 102/130 (78.46%), Query Frame = 0


Query: 28  EPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHR 87
           EPYVG++F+SE+ A+ FY EY++++GFVVR+MQRRRSGIDGRTLARRLGCNKQGF PN++
Sbjct: 10  EPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFGPNNQ 69

Query: 88  GIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL-VVCSNGFNSSVSYSD 147
                   S  S+REGCKATILVKMEKSGKWVVTRF+K+HNH L  + S+ ++S V +  
Sbjct: 70  ----RSSSSSSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSSYDSFVRFQS 129

Query: 148 SLTYV--LCF 155
              +V  +CF
Sbjct: 130 LYLWVFLICF 135

[Close]

BLAST of Carg11519-RA vs. TAIR 10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 157.9 bits (398), Expect = 6.8e-39
Identity = 78/119 (65.55%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 28  EPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHR 87
           EPYVG++F+SE+ A+ FY EY++++GFVVR+MQRRRSGIDGRTLARRLGCNKQGF PN++
Sbjct: 9   EPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFGPNNQ 68

Query: 88  GIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGFNSSVSYSD 147
                   S  S+REGCKATILVKMEKSGKWVVTRF+K+HNH L     G +S  S++D
Sbjct: 69  ----RSSSSSSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFI--GSSSYDSFAD 121

[Close]

BLAST of Carg11519-RA vs. TAIR 10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 65/107 (60.75%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 27  LEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNH 86
           +EP  G+ F+SEDAA+ FY +Y+R++GFV+R+M  RRS  DGR LARR GCNK+G   + 
Sbjct: 20  IEPREGIIFESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSI 79

Query: 87  RGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVV 134
           RG +G  +K RPS REGCKA I VK ++SGKWV+T+FVK+HNHPLVV
Sbjct: 80  RGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLVV 126

[Close]

BLAST of Carg11519-RA vs. TAIR 10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 117.9 bits (294), Expect = 7.8e-27
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 22  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 81
           E + ++EP++GMEF+SE+AA+ FY  YA  MGFV+R+   RRS  DG  + RRL CNK+G
Sbjct: 26  EASPMVEPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEG 85

Query: 82  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCS 136
           F    R      +K R   REGCKA I+VK EKSG W+VT+F K+HNHPL+  S
Sbjct: 86  FR-RSRPRRSESRKPRAITREGCKALIVVKREKSGTWLVTKFEKEHNHPLLPLS 138

[Close]

BLAST of Carg11519-RA vs. TAIR 10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 28  EPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFS-PNH 87
           EPYVG EF+SE AA  FY  YA ++GFV+R+ +  RS  DG  + R+L CNK+G+  P+ 
Sbjct: 69  EPYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSK 128

Query: 88  RGIYGLDK--KSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 133
           R     DK  + R   R GCKA IL++ E SGKWV+T+FVK+HNH L+
Sbjct: 129 R-----DKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLM 171

The following BLAST results are available for this feature:

BLAST of Carg11519-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014578.1	4.4e-88	100.00	Protein FAR1-RELATED SEQUENCE 5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023548849.1	4.3e-75	100.00	protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022953365.1	4.3e-75	100.00	protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita moschata] >XP_0229533...	[more]
KAG6576061.1	4.3e-75	100.00	Protein FAR1-RELATED SEQUENCE 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022991543.1	4.3e-75	100.00	protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita maxima] >XP_022991544...	[more]

BLAST of Carg11519-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL8	4.3e-22	50.00	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=...	[more]
Q3E7I5	1.6e-16	42.73	Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 S...	[more]
Q9M8J3	1.6e-16	42.73	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=...	[more]
Q9SWG3	1.1e-14	37.27	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1...	[more]
Q3EBQ3	4.8e-13	36.94	Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=...	[more]

BLAST of Carg11519-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JWI8	2.1e-75	100.00	protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GPF5	2.1e-75	100.00	protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0K5G0	2.5e-73	95.74	FAR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G375750 PE=3 S...	[more]
A0A1S3BS39	3.1e-71	93.62	protein FAR1-RELATED SEQUENCE 5 OS=Cucumis melo OX=3656 GN=LOC103492594 PE=4 SV=...	[more]
A0A6J1CQQ3	6.9e-71	94.33	protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Carg11519-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12850.2	8.1e-40	61.54	Far-red impaired responsive (FAR1) family protein	[more]
AT4G12850.1	6.8e-39	65.55	Far-red impaired responsive (FAR1) family protein	[more]
AT2G43280.1	1.9e-33	60.75	Far-red impaired responsive (FAR1) family protein	[more]
AT3G07500.1	7.8e-27	52.63	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.1	1.4e-23	50.93	Far-red impaired responsive (FAR1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 43..132 e-value: 7.0E-29 score: 100.4
None	No IPR available	PANTHER	PTHR46328:SF15	PROTEIN FAR1-RELATED SEQUENCE 5-LIKE	coord: 2..143
None	No IPR available	PANTHER	PTHR46328	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	coord: 2..143

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11519	Carg11519	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11519-RA:1	Carg11519-RA:1	exon
Carg11519-RA:2	Carg11519-RA:2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11519-RA:five_prime_utr	Carg11519-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11519-RA:cds	Carg11519-RA:cds	CDS
Carg11519-RA:cds	Carg11519-RA:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11519-RA:three_prime_utr	Carg11519-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11519-RA	Carg11519-RA-protein	polypeptide