Carg11011-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11011-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	glycine-rich protein 5-like
Location	Carg_Chr08: 6142636 .. 6143077 (-)
Sequence length	366
RNA-Seq Expression	Carg11011-RA
Synteny	Carg11011-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGGATTCACGTTGTTGTTGTTGTCGTGGTCGTGTTTTTTTTGCTCGTCGTGCATGCAAATGGACGTAACGTTCCAGGTTGCTAAACTATCACTAAACTCAAAAGTTTTATGTAACGAAGAAAATGTTTGTGTTGTTAATATTTTAAATACAGGTGGTGGTAGCGGGGATGGGGATGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGCGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

mRNA sequence

ATGGCGAGGATTCACGTTGTTGTTGTTGTCGTGGTCGTGTTTTTTTTGCTCGTCGTGCATGCAAATGGACGTAACGTTCCAGGTGGTGGTAGCGGGGATGGGGATGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGCGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

Coding sequence (CDS)

ATGGCGAGGATTCACGTTGTTGTTGTTGTCGTGGTCGTGTTTTTTTTGCTCGTCGTGCATGCAAATGGACGTAACGTTCCAGGTGGTGGTAGCGGGGATGGGGATGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGCGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

Protein sequence

MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPFP

Homology

[Close]

BLAST of Carg11011-RA vs. NCBI nr
Match: KAG7026124.1 (hypothetical protein SDJN02_12623, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.2 bits (557), Expect = 2.0e-53
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60
           MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY
Sbjct: 1   MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60

Query: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120
           GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of Carg11011-RA vs. NCBI nr
Match: XP_022964503.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60
           MA+IH VVVVVVVF LLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY
Sbjct: 1   MAKIH-VVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60

Query: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120
           GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

Query: 121 P 122
           P
Sbjct: 121 P 120

[Close]

BLAST of Carg11011-RA vs. NCBI nr
Match: XP_023000565.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 208.4 bits (529), Expect = 3.5e-50
Identity = 117/121 (96.69%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60
           M +IH VVVVVVVF LLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY
Sbjct: 1   MVKIH-VVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60

Query: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120
           GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

Query: 121 P 122
           P
Sbjct: 121 P 120

[Close]

BLAST of Carg11011-RA vs. NCBI nr
Match: XP_023515156.1 (glycine-rich protein 23-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-50
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60
           MA+IH VVVVVVVF LLVVHANGRNVPGGGSGDGDGM+D+AVAPVAGQPSSNDVDQKNIY
Sbjct: 1   MAKIH-VVVVVVVFVLLVVHANGRNVPGGGSGDGDGMVDMAVAPVAGQPSSNDVDQKNIY 60

Query: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120
           GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

Query: 121 P 122
           P
Sbjct: 121 P 120

[Close]

BLAST of Carg11011-RA vs. NCBI nr
Match: KAG6593795.1 (S-protein-like 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 3.3e-48
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60
           MARIHVVVVVVVVF LLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY
Sbjct: 1   MARIHVVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60

Query: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGV 114
           GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGV
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGV 113

[Close]

BLAST of Carg11011-RA vs. ExPASy TrEMBL
Match: A0A6J1HL05 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.9e-51
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60
           MA+IH VVVVVVVF LLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY
Sbjct: 1   MAKIH-VVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60

Query: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120
           GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

Query: 121 P 122
           P
Sbjct: 121 P 120

[Close]

BLAST of Carg11011-RA vs. ExPASy TrEMBL
Match: A0A6J1KIQ3 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 117/121 (96.69%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60
           M +IH VVVVVVVF LLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY
Sbjct: 1   MVKIH-VVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIY 60

Query: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120
           GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

Query: 121 P 122
           P
Sbjct: 121 P 120

[Close]

BLAST of Carg11011-RA vs. ExPASy TrEMBL
Match: A0A5D3D259 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001010 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.1e-28
Identity = 80/116 (68.97%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 8   VVVVVVFFLLVVHANGRNVPGGGSGDGD-GMLDLAVAPVAGQPSSNDV-DQKNIYGGVGG 67
           +VV+V F   +++ +GR VP G S  G+   L+ A +PVA  P    V DQKNI+GGVGG
Sbjct: 5   IVVLVAFVFFIMNVDGRKVPEGASRQGEYQTLERAASPVAEPPCRGGVDDQKNIFGGVGG 64

Query: 68  FAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPFP 122
           F GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGHGGFG GVGGVGGVGGGVVPFP
Sbjct: 65  FTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPFP 120

[Close]

BLAST of Carg11011-RA vs. ExPASy TrEMBL
Match: A0A1S3CEA9 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499502 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.1e-28
Identity = 80/116 (68.97%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 8   VVVVVVFFLLVVHANGRNVPGGGSGDGD-GMLDLAVAPVAGQPSSNDV-DQKNIYGGVGG 67
           +VV+V F   +++ +GR VP G S  G+   L+ A +PVA  P    V DQKNI+GGVGG
Sbjct: 5   IVVLVAFVFFIMNVDGRKVPEGASRQGEYQTLERAASPVAEPPCRGGVDDQKNIFGGVGG 64

Query: 68  FAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPFP 122
           F GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGHGGFG GVGGVGGVGGGVVPFP
Sbjct: 65  FTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPFP 120

[Close]

BLAST of Carg11011-RA vs. ExPASy TrEMBL
Match: A0A6J1CDU6 (WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009813 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18
Identity = 82/135 (60.74%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 1   MARIHVVVVVVVVFFLLVVHANGRNVPG-GGSGDGDGMLDLAVAPVAGQPSSNDV-DQKN 60
           M +I+ V VV+  F LLVVHA+GR+VPG   S D D  L+LA  PVA  PSS  V +QK 
Sbjct: 1   MVKIY-VFVVLAAFVLLVVHASGRHVPGHDRSDDKDQTLELAPTPVADPPSSGGVREQKQ 60

Query: 61  -IYGGVGGFAGMGGYIGGLFPHL--GGVGVIGKYGGIGGGIGF---GHGGFGGGVGGVGG 120
            I+GGVGGFAGMGG++GGLFPHL  GGVG IGK+GGIGGG G    G GG GG  GG GG
Sbjct: 61  IIFGGVGGFAGMGGFVGGLFPHLGFGGVGGIGKFGGIGGGTGIIPGGVGGIGGVGGGAGG 120

Query: 121 VGGGV------VPFP 122
           VGGGV      +PFP
Sbjct: 121 VGGGVGGVGGGLPFP 134

[Close]

BLAST of Carg11011-RA vs. TAIR 10
Match: AT1G04660.1 (glycine-rich protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 60/130 (46.15%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 9   VVVVVFFLLVVHANGRNVPG-GGSGDGDGMLDLAVAPVAGQ-----PSSNDVDQKNIYG- 68
           VV V+  +  V A  R VPG    G   G  D    P+  +     P  +  D+K I G 
Sbjct: 7   VVCVLLAISFVCARARQVPGESDEGKTTGHDDTTTMPMHAKAADQLPPKSVGDKKCIGGV 66

Query: 69  -GVGGFAGMGGY--IGGL-FPHLGGVGVIGKYGGIGGGIGFGH----------GGFGGGV 118
            GVGGFAG+GG   +GGL  P +GG+G IGKYGGIGG  G G           GG GGGV
Sbjct: 67  AGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAAGIGGFHSIGGVGGLGGVGGGV 126

The following BLAST results are available for this feature:

BLAST of Carg11011-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026124.1	2.0e-53	100.00	hypothetical protein SDJN02_12623, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022964503.1	1.2e-50	97.52	glycine-rich protein 5-like [Cucurbita moschata]	[more]
XP_023000565.1	3.5e-50	96.69	glycine-rich protein 5-like [Cucurbita maxima]	[more]
XP_023515156.1	4.6e-50	95.87	glycine-rich protein 23-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593795.1	3.3e-48	99.12	S-protein-like 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg11011-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg11011-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HL05	5.9e-51	97.52	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 S...	[more]
A0A6J1KIQ3	1.7e-50	96.69	glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=...	[more]
A0A5D3D259	9.1e-28	68.97	Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CEA9	9.1e-28	68.97	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1CDU6	2.2e-18	60.74	WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]

BLAST of Carg11011-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04660.1	2.3e-07	46.15	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 7..116
None	No IPR available	PANTHER	PTHR34463:SF12	GLYCINE-RICH PROTEIN	coord: 7..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11011	Carg11011	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11011-RA:2	Carg11011-RA:2	exon
Carg11011-RA:1	Carg11011-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11011-RA:cds	Carg11011-RA:cds_2	CDS
Carg11011-RA:cds	Carg11011-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11011-RA	Carg11011-RA-protein	polypeptide