Carg10914-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10914-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	thylakoid lumenal 16.5 kDa protein, chloroplastic
Location	Carg_Chr05: 11379114 .. 11381618 (+)
Sequence length	1161
RNA-Seq Expression	Carg10914-RA
Synteny	Carg10914-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACATCCTTCCTATCAACAGCGAACACGTTCCATTCTTCCACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCATCTCCATTGTTGAGATCAAGATTTTCTTGCCTTAATTGCCGTAATAACGCTAGAAGACTGGTAATCTGCAAGGGAAATAACGACCCACCATCGCAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTGGTGGGTCAAGGATTCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAAGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTGGAAAGACAAGGGGTTATCAGCTCCGCCAATAAAGAAAAAGGTTTTGTATGCACTCTATGTGTTTGTGTTTAGTTCTCTGTGAAACTTCCAACTTCAGAATTTGATCCCATTACTGAATACTTTGACTGATTGGTTGTGTTTGTATACTAGAGTTCTTAAGCCAAGTATATGTTTGTAATGTGGGGTTCCTGATGTCCTGGCTGTAGGTTTGCTAATCCTATGGGATACATAAATCCAAGTTCTTCAACCTATGTAGTTACTTTTGCAAACTACAAACCCACAAGTCAAAACTCACCCATATAAATTTAGGTTTCCATAACTCAATCCTTCTTAGAATAATCCATGTAACGGTTGAAGCCCGCCGCTAGGCTTCCCCTCGAGGTTTTTAAAGTGTGTCTGCTATAGAGAGGTTTTCACACCTTTATAAAGAATGGTTCGTTTTCCTCCCCAACCGATGTGGGATCTCGCAATCCACTCCCTTCAGGACCCAACGTCCTTGTTGGCACACCGCCTCGTGTACACACCTCTTTGGGGCTCAGCCTCCTCATTAGCACATCGCCCAGTGTCTGGTTTTGATACCATTTGTAACGGTCCAAGCCCGCGACTAGAAGATATTGTCCTATTTGGGCTTCTCCTCAAAGTTTTTAAAGCGCGTTTGCTAGGGAGAGGATTCACACCCTTACAAAGAATGCTTCGTTCTCCTCCCCAACCAATGTGGGATCTCACAATCCACCCCCCTTTGGGGCTTAGCGTCCTTGTTGGCACATCGCCTCATGTCCACCCCCCTTCGGGGCTCAACCTCCTTGCTGGTACATCATCCGATGTCTAGCTCTAATACCATTTGTAACGACCCAAGCCCACCGCTAGCAGACATTGTCCGCTTTGGGCTTTTCCTTCTGGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTTAGGGAGAAGTTTTCACACCCTTGTAAAGAATGCTTCATTCTCCTCCCTAACTGACGTGGCATCTCACAATCCAAATGCAGGCTATAAAGCTTTTCAACCTCATTTGAAGCAAAGCTATACTTAATAAAACATAGAGTCTGGTCTAGGTTTTTGAAATCATGAGGCTTAATTCTTCATGGGAGTGGATCATAGAGTTTATCATAAGCTAGCAGAGTTGAGCTATGAGAAAGGGCCTCTACAACAAAAGCTGAAACCTTGCCATAATCATTCGGAATTTTGCAGGATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTTGGTCAAGCCATTGATAACAATGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAATGATGCAGATTGGGTTCGGAATGCCAACTTAGCCTTCAACAAGGTTAGCAAAATAGATTGAACATTTCATGAGAAGTGAAATGATTCTTCGAGGAATTTCTAACTTTTTTGTGTAATTTCTTGAGCAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAAGTGGACGCATTCAACTCCTCTCTAGCTTCATTAATCTCATCAGGTGGTTAAAACAGGGTAAAACTACTAAGAACTGAAAGGTTTAACCCTCCACAGAGTTCTAAACAATATAACATTTTTGCATTGCAGTGACTCAGAATGATGTCCAATCCTCTAAAACTGCCTTTGTAGCTTCTGCCAGTGCACTTGAGAAATGGACCGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGAGTGGAAAACAACCATCTCTACTGATCTCATTTCTACTGTATTTTTAGTCTCCTCACCTCGTAAATCATTGCAGTTTAAGGTCAAGAAGCTGATTTTTCTTGTCATCTTCTTACTGAGTTTCTGGTGTCAATGTTACTGAACTTTGAATGGATAGATTCCATTGTTTAGTATGAATGTTATTGTTGGTTTATCCAAGAAAACCTACACATCTGTTTATGAACAAAGCAAGATATCAGTTCAGTTAGGATTACCTAAAACACTGCAGAACTTTGGATCATTAAAATGGTGGTTGACAAGAATCAGGAGTTCAAGAACATCCTACAGTTTTTTTTCTTTTCCAGATGTTCATGGAGCTCTCGATGGTCTGAATCCTCTTGGATTATTTGGATAACTTTCACTATTCTAGTAAAAACAGATGGTATGCATTAGGAGTTTTTTAAATTTGGGCTATTA

mRNA sequence

ATGGCAACATCCTTCCTATCAACAGCGAACACGTTCCATTCTTCCACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCATCTCCATTGTTGAGATCAAGATTTTCTTGCCTTAATTGCCGTAATAACGCTAGAAGACTGGTAATCTGCAAGGGAAATAACGACCCACCATCGCAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTGGTGGGTCAAGGATTCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAAGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTGGAAAGACAAGGGGTTATCAGCTCCGCCAATAAAGAAAAAGGATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTTGGTCAAGCCATTGATAACAATGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAATGATGCAGATTGGGTTCGGAATGCCAACTTAGCCTTCAACAAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAAGTGGACGCATTCAACTCCTCTCTAGCTTCATTAATCTCATCAGTGACTCAGAATGATGTCCAATCCTCTAAAACTGCCTTTGTAGCTTCTGCCAGTGCACTTGAGAAATGGACCGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGAGTGGAAAACAACCATCTCTACTGATCTCATTTCTACTGTATTTTTAGTCTCCTCACCTCGTAAATCATTGCAGTTTAAGGTCAAGAAGCTGATTTTTCTTGTCATCTTCTTACTGAGTTTCTGGTGTCAATGTTACTGAACTTTGAATGGATAGATTCCATTGTTTAGTATGAATGTTATTGTTGGTTTATCCAAGAAAACCTACACATCTGTTTATGAACAAAGCAAGATATCAGTTCAGTTAGGATTACCTAAAACACTGCAGAACTTTGGATCATTAAAATGGTGGTTGACAAGAATCAGGAGTTCAAGAACATCCTACAGTTTTTTTTCTTTTCCAGATGTTCATGGAGCTCTCGATGGTCTGAATCCTCTTGGATTATTTGGATAACTTTCACTATTCTAGTAAAAACAGATGGTATGCATTAGGAGTTTTTTAAATTTGGGCTATTA

Coding sequence (CDS)

ATGGCAACATCCTTCCTATCAACAGCGAACACGTTCCATTCTTCCACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCATCTCCATTGTTGAGATCAAGATTTTCTTGCCTTAATTGCCGTAATAACGCTAGAAGACTGGTAATCTGCAAGGGAAATAACGACCCACCATCGCAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTGGTGGGTCAAGGATTCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAAGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTGGAAAGACAAGGGGTTATCAGCTCCGCCAATAAAGAAAAAGGATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTTGGTCAAGCCATTGATAACAATGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAATGATGCAGATTGGGTTCGGAATGCCAACTTAGCCTTCAACAAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAAGTGGACGCATTCAACTCCTCTCTAGCTTCATTAATCTCATCAGTGACTCAGAATGATGTCCAATCCTCTAAAACTGCCTTTGTAGCTTCTGCCAGTGCACTTGAGAAATGGACCGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGA

Protein sequence

MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPSQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL

Homology

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BLAST of Carg10914-RA vs. NCBI nr
Match: KAG7030378.1 (Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 424.9 bits (1091), Expect = 4.6e-115
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60
           MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60

Query: 61  QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
           QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV
Sbjct: 61  QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180
           ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP
Sbjct: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180

Query: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235

[Close]

BLAST of Carg10914-RA vs. NCBI nr
Match: KAG6599393.1 (Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSS-PLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSSSSSSS PLLRSRFSCLNCRNNARRLVICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236

[Close]

BLAST of Carg10914-RA vs. NCBI nr
Match: XP_022946074.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 413.7 bits (1062), Expect = 1.1e-111
Identity = 233/236 (98.73%), Postives = 233/236 (98.73%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSS-PLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSSSSSSS PLLRSRFSCLN RNNARRLVICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNYRNNARRLVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVA ASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVALASALEKWTALAGLVGQLKGL 236

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BLAST of Carg10914-RA vs. NCBI nr
Match: XP_023545851.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545852.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545854.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413.3 bits (1061), Expect = 1.4e-111
Identity = 230/235 (97.87%), Postives = 230/235 (97.87%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60
           MATSFLSTANTFHSSTP   SSSSSSSSS PLLRSRFSCLNCRNNARRLVICKGNNDPPS
Sbjct: 1   MATSFLSTANTFHSSTP---SSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60

Query: 61  QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
           QIPTLTKRSLSICFIS FIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV
Sbjct: 61  QIPTLTKRSLSICFISGFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180
           ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP
Sbjct: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180

Query: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 232

[Close]

BLAST of Carg10914-RA vs. NCBI nr
Match: XP_022999175.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 413.3 bits (1061), Expect = 1.4e-111
Identity = 228/235 (97.02%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60
           MATSFLSTANTFHSS+PSSSSSSSSSSSS PLLRSRFSCLNCRNNARR VICKGNNDPPS
Sbjct: 1   MATSFLSTANTFHSSSPSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRSVICKGNNDPPS 60

Query: 61  QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
           +IP+LTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV
Sbjct: 61  KIPSLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180
           ISSANKEKGYLQEVV+KLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLS+SP
Sbjct: 121 ISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSTSP 180

Query: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235

[Close]

BLAST of Carg10914-RA vs. ExPASy Swiss-Prot
Match: O22773 (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=3)

HSP 1 Score: 193.4 bits (490), Expect = 3.0e-48
Identity = 132/240 (55.00%), Postives = 161/240 (67.08%), Query Frame = 0


Query: 1   MATSFL--STANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDP 60
           MA S L  ST N F S+T SSS  +  + S            N +N     ++ K     
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSG-----------NSKNQTSSSLLWK----- 60

Query: 61  PSQIPTLTKRSLSICFISSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRL 120
                   +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR+
Sbjct: 61  --------RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRI 120

Query: 121 ERQGVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNK 180
           ERQ V++SA KEKGYLQ++VYKLSKVGQAI+NND   A  VLG   D +WV+  NLAF K
Sbjct: 121 ERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTK 180

Query: 181 LSSSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           LS+SPEE +EV+AFNSSLASLI+SV +ND++SSK AFV+SA A EKWT L GL+ QLKGL
Sbjct: 181 LSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

[Close]

BLAST of Carg10914-RA vs. ExPASy TrEMBL
Match: A0A6J1G2S1 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450272 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.2e-112
Identity = 233/236 (98.73%), Postives = 233/236 (98.73%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSS-PLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSSSSSSS PLLRSRFSCLN RNNARRLVICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNYRNNARRLVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVA ASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVALASALEKWTALAGLVGQLKGL 236

[Close]

BLAST of Carg10914-RA vs. ExPASy TrEMBL
Match: A0A6J1KEL3 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493636 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.8e-112
Identity = 228/235 (97.02%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60
           MATSFLSTANTFHSS+PSSSSSSSSSSSS PLLRSRFSCLNCRNNARR VICKGNNDPPS
Sbjct: 1   MATSFLSTANTFHSSSPSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRSVICKGNNDPPS 60

Query: 61  QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
           +IP+LTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV
Sbjct: 61  KIPSLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180
           ISSANKEKGYLQEVV+KLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLS+SP
Sbjct: 121 ISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSTSP 180

Query: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235

[Close]

BLAST of Carg10914-RA vs. ExPASy TrEMBL
Match: A0A5A7V8J2 (Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00360 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.3e-102
Identity = 211/235 (89.79%), Postives = 225/235 (95.74%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60
           MATSFLSTANTFHSSTP SSSSSSSS SS PLLRSRF CL C NN +RLVICK ++DPPS
Sbjct: 1   MATSFLSTANTFHSSTP-SSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPS 60

Query: 61  QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
           +IP LTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGV
Sbjct: 61  KIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGV 120

Query: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180
           ISSANKEKGYLQE+VYKLSKVGQAID+NDF+TASSVLGGS+DADWV+NANLAFNKLSSSP
Sbjct: 121 ISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSP 180

Query: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           EEKSEVDAFNSSLASLISSVT++DV+SSKTAFVASASA EKWTALAGLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

[Close]

BLAST of Carg10914-RA vs. ExPASy TrEMBL
Match: A0A1S3C541 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497128 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.3e-102
Identity = 211/235 (89.79%), Postives = 225/235 (95.74%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60
           MATSFLSTANTFHSSTP SSSSSSSS SS PLLRSRF CL C NN +RLVICK ++DPPS
Sbjct: 1   MATSFLSTANTFHSSTP-SSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPS 60

Query: 61  QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
           +IP LTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGV
Sbjct: 61  KIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGV 120

Query: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180
           ISSANKEKGYLQE+VYKLSKVGQAID+NDF+TASSVLGGS+DADWV+NANLAFNKLSSSP
Sbjct: 121 ISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSP 180

Query: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           EEKSEVDAFNSSLASLISSVT++DV+SSKTAFVASASA EKWTALAGLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

[Close]

BLAST of Carg10914-RA vs. ExPASy TrEMBL
Match: A0A0A0LI29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.1e-101
Identity = 211/238 (88.66%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSS---SPLLRSRFSCLNCRNNARRLVICKGNND 60
           MAT+FLSTANTFHSSTPSS SSSSSSSSS    PL+RSRF CL C NN +RLVICK ++D
Sbjct: 1   MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60

Query: 61  PPSQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLER 120
           PPS+IP LTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+
Sbjct: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120

Query: 121 QGVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLS 180
           QGVISSANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGS+DADWV+ AN AFNKLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180

Query: 181 SSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           SSPEEKSEVDAFNSSLASLISSVT+NDV+SSKTAFVASASA EKWTALAGLVGQLKGL
Sbjct: 181 SSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238

[Close]

BLAST of Carg10914-RA vs. TAIR 10
Match: AT4G02530.1 (chloroplast thylakoid lumen protein )

HSP 1 Score: 193.4 bits (490), Expect = 2.1e-49
Identity = 132/240 (55.00%), Postives = 161/240 (67.08%), Query Frame = 0


Query: 1   MATSFL--STANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDP 60
           MA S L  ST N F S+T SSS  +  + S            N +N     ++ K     
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSG-----------NSKNQTSSSLLWK----- 60

Query: 61  PSQIPTLTKRSLSICFISSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRL 120
                   +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR+
Sbjct: 61  --------RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRI 120

Query: 121 ERQGVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNK 180
           ERQ V++SA KEKGYLQ++VYKLSKVGQAI+NND   A  VLG   D +WV+  NLAF K
Sbjct: 121 ERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTK 180

Query: 181 LSSSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           LS+SPEE +EV+AFNSSLASLI+SV +ND++SSK AFV+SA A EKWT L GL+ QLKGL
Sbjct: 181 LSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

The following BLAST results are available for this feature:

BLAST of Carg10914-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030378.1	4.6e-115	100.00	Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
KAG6599393.1	1.1e-113	99.58	Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_022946074.1	1.1e-111	98.73	thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita moschata]	[more]
XP_023545851.1	1.4e-111	97.87	thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo sub...	[more]
XP_022999175.1	1.4e-111	97.02	thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita maxima]	[more]

BLAST of Carg10914-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22773	3.0e-48	55.00	Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Carg10914-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2S1	5.2e-112	98.73	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KEL3	6.8e-112	97.02	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7V8J2	6.3e-102	89.79	Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C541	6.3e-102	89.79	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0LI29	1.1e-101	88.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1	[more]

BLAST of Carg10914-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02530.1	2.1e-49	55.00	chloroplast thylakoid lumen protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
IPR038862	Chloroplast thylakoid lumenal protein MPH2	PANTHER	PTHR35742	THYLAKOID LUMENAL 16.5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..235

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg10914	Carg10914	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10914-RA:1	Carg10914-RA:1	exon
Carg10914-RA:2	Carg10914-RA:2	exon
Carg10914-RA:3	Carg10914-RA:3	exon
Carg10914-RA:4	Carg10914-RA:4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10914-RA:cds	Carg10914-RA:cds	CDS
Carg10914-RA:cds	Carg10914-RA:cds_2	CDS
Carg10914-RA:cds	Carg10914-RA:cds_3	CDS
Carg10914-RA:cds	Carg10914-RA:cds_4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10914-RA:three_prime_utr	Carg10914-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg10914-RA	Carg10914-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010206	photosystem II repair