Carg10891-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10891-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	zinc finger CCCH domain-containing protein 39-like
Location	Carg_Chr05: 11496747 .. 11498004 (+)
Sequence length	1038
RNA-Seq Expression	Carg10891-RA
Synteny	Carg10891-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTCAATGATATGCGAGGCTCTGTTATACCGCCGCCATTGCATTCTTATGGTGCTAATGGCGATGCGTCTGGTTGCTGGTCTCAGTATCCTAGGAACGATCTATTTGATCCACAATCACAATTTGAGGTACAGCAGCCTCCATTCAAAAGAGCTAGAAATTTCGAAGAAAATCAATCTAGTCCTATGCCTTATCCAAATCCACCATCGAATTCCAGAGTTCAGCCTCCAAATGCTCCGATGAATAAAGGAATAAACAACATCTTCTTTAAGACAAGGATGTGTGCGAAATTTAAGCTTGGTTTGTGTAGGAATGGTGCTAGTTGCAACTTTGCGCATGGTGTTGAAGACATGCGGCAACCCCCTCCAAATTGGCAAGAAATTGTTGGTATACGGGAGGATGATCAATCTGTAAGCAACTGGAATGACGATCAGAAAATTATCCAGAAAATGAAGCTGTGTAGGAAGTTCTATAATGGAGAGGAATGCCCTTATGGAGATAGGTGTAATTTTCTTCATGAAGATCCTGCTAAGTTTAGAGATGATTCAGGGAGGTTTAGGGAGAGTTCAGCTATAAGCATTGGAACCACAGGAACTCCATTGATCAATGGAAGTGATTCTAGCTACCCTGAACCTATCAAGGCAGCTTCTAGCTCTGTTCCTGATGCTCTTCGTGCTAATGGAAATTCTAGGCCTTCATTCTGGAAGACGAAGCTATGCACCAAATGGGAGATTACAGGCCATTGCCCCTTCGGTGAAAAGTGCCATTTTGCTCATGGCCAATCTGGTATTCATAGCTCTCTCTCTTCAATGATTATATGAATGGAGTTCTGAGTAGCTATTTGATGAACTGAAAATGATGATCTGCCTTGAATTATCTTCATAGTTAGCAAAACCATGTTTAGTTTGAATCATTTGTTAAGTATTTGTGTTCTGTTCTCTGTGAAGCTTTTGACATTGTCATTATGCATACTACTTTGAGATGCTTATTGTTATTTATGAATCAGAGTTACAACTATTCATTGGACGTGAAGGGGAGGTATCTAATACTGCCCTCAATGTAAAGCCTCTCGTTGTGGCCATGGAAGCACCTTCAAGTTTGGCGACGAGTGTTCCGTCCTCCGCCCTGCCGGAGGGCCAAGCGAAGCAGTCCTTGCTGAAATGGAAGGGACCCAAGAAGATAAATCGGATCTATGCGGATTGGCTCGATGATTTGCCTCTGTCCCCAAACTCAACGAGCCAATTGGAGGGTTGA

mRNA sequence

ATGAGTTTCAATGATATGCGAGGCTCTGTTATACCGCCGCCATTGCATTCTTATGGTGCTAATGGCGATGCGTCTGGTTGCTGGTCTCAGTATCCTAGGAACGATCTATTTGATCCACAATCACAATTTGAGGTACAGCAGCCTCCATTCAAAAGAGCTAGAAATTTCGAAGAAAATCAATCTAGTCCTATGCCTTATCCAAATCCACCATCGAATTCCAGAGTTCAGCCTCCAAATGCTCCGATGAATAAAGGAATAAACAACATCTTCTTTAAGACAAGGATGTGTGCGAAATTTAAGCTTGGTTTGTGTAGGAATGGTGCTAGTTGCAACTTTGCGCATGGTGTTGAAGACATGCGGCAACCCCCTCCAAATTGGCAAGAAATTGTTGGTATACGGGAGGATGATCAATCTGTAAGCAACTGGAATGACGATCAGAAAATTATCCAGAAAATGAAGCTGTGTAGGAAGTTCTATAATGGAGAGGAATGCCCTTATGGAGATAGGTGTAATTTTCTTCATGAAGATCCTGCTAAGTTTAGAGATGATTCAGGGAGGTTTAGGGAGAGTTCAGCTATAAGCATTGGAACCACAGGAACTCCATTGATCAATGGAAGTGATTCTAGCTACCCTGAACCTATCAAGGCAGCTTCTAGCTCTGTTCCTGATGCTCTTCGTGCTAATGGAAATTCTAGGCCTTCATTCTGGAAGACGAAGCTATGCACCAAATGGGAGATTACAGGCCATTGCCCCTTCGGTGAAAAGTGCCATTTTGCTCATGGCCAATCTGAGTTACAACTATTCATTGGACGTGAAGGGGAGGTATCTAATACTGCCCTCAATGTAAAGCCTCTCGTTGTGGCCATGGAAGCACCTTCAAGTTTGGCGACGAGTGTTCCGTCCTCCGCCCTGCCGGAGGGCCAAGCGAAGCAGTCCTTGCTGAAATGGAAGGGACCCAAGAAGATAAATCGGATCTATGCGGATTGGCTCGATGATTTGCCTCTGTCCCCAAACTCAACGAGCCAATTGGAGGGTTGA

Coding sequence (CDS)

ATGAGTTTCAATGATATGCGAGGCTCTGTTATACCGCCGCCATTGCATTCTTATGGTGCTAATGGCGATGCGTCTGGTTGCTGGTCTCAGTATCCTAGGAACGATCTATTTGATCCACAATCACAATTTGAGGTACAGCAGCCTCCATTCAAAAGAGCTAGAAATTTCGAAGAAAATCAATCTAGTCCTATGCCTTATCCAAATCCACCATCGAATTCCAGAGTTCAGCCTCCAAATGCTCCGATGAATAAAGGAATAAACAACATCTTCTTTAAGACAAGGATGTGTGCGAAATTTAAGCTTGGTTTGTGTAGGAATGGTGCTAGTTGCAACTTTGCGCATGGTGTTGAAGACATGCGGCAACCCCCTCCAAATTGGCAAGAAATTGTTGGTATACGGGAGGATGATCAATCTGTAAGCAACTGGAATGACGATCAGAAAATTATCCAGAAAATGAAGCTGTGTAGGAAGTTCTATAATGGAGAGGAATGCCCTTATGGAGATAGGTGTAATTTTCTTCATGAAGATCCTGCTAAGTTTAGAGATGATTCAGGGAGGTTTAGGGAGAGTTCAGCTATAAGCATTGGAACCACAGGAACTCCATTGATCAATGGAAGTGATTCTAGCTACCCTGAACCTATCAAGGCAGCTTCTAGCTCTGTTCCTGATGCTCTTCGTGCTAATGGAAATTCTAGGCCTTCATTCTGGAAGACGAAGCTATGCACCAAATGGGAGATTACAGGCCATTGCCCCTTCGGTGAAAAGTGCCATTTTGCTCATGGCCAATCTGAGTTACAACTATTCATTGGACGTGAAGGGGAGGTATCTAATACTGCCCTCAATGTAAAGCCTCTCGTTGTGGCCATGGAAGCACCTTCAAGTTTGGCGACGAGTGTTCCGTCCTCCGCCCTGCCGGAGGGCCAAGCGAAGCAGTCCTTGCTGAAATGGAAGGGACCCAAGAAGATAAATCGGATCTATGCGGATTGGCTCGATGATTTGCCTCTGTCCCCAAACTCAACGAGCCAATTGGAGGGTTGA

Protein sequence

MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQSSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKLCTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVPSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG

Homology

[Close]

BLAST of Carg10891-RA vs. NCBI nr
Match: KAG6599412.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 724.9 bits (1870), Expect = 3.2e-205
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ
Sbjct: 233 MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 292

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 293 SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 352

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 353 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 412

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL
Sbjct: 413 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 472

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP
Sbjct: 473 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 532

Query: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
           SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG
Sbjct: 533 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 577

[Close]

BLAST of Carg10891-RA vs. NCBI nr
Match: KAG7030401.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 724.9 bits (1870), Expect = 3.2e-205
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300

Query: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
           SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 345

[Close]

BLAST of Carg10891-RA vs. NCBI nr
Match: XP_022946029.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata])

HSP 1 Score: 719.9 bits (1857), Expect = 1.0e-203
Identity = 343/345 (99.42%), Postives = 344/345 (99.71%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL IGREGEVSNTALNVKPLVVAMEAPSSLATSVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300

Query: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
           SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSP+STSQLEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 345

[Close]

BLAST of Carg10891-RA vs. NCBI nr
Match: XP_023546561.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 714.1 bits (1842), Expect = 5.6e-202
Identity = 340/345 (98.55%), Postives = 342/345 (99.13%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRAR FEENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARTFEENQ 60

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVED+R
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDVR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL IGREGEVSNTALNVKPLVVAMEAPSSLA SVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSSLAASVP 300

Query: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
           SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSP+STSQLEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 345

[Close]

BLAST of Carg10891-RA vs. NCBI nr
Match: XP_022999273.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 703.0 bits (1813), Expect = 1.3e-198
Identity = 336/345 (97.39%), Postives = 338/345 (97.97%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFE QQPPFKRAR FEENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEAQQPPFKRARTFEENQ 60

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTPL+NGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL IGREGEVSNTALNVKPLVVAMEAPS    SVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPS----SVP 300

Query: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
           SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSP+STSQLEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 341

[Close]

BLAST of Carg10891-RA vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 4.3e-80
Identity = 166/345 (48.12%), Postives = 214/345 (62.03%), Query Frame = 0


Query: 34  NDLFDPQSQFEVQ---QPPFKRARNFEENQSSP-MPYPNPPSNSRVQPPN---APMNKGI 93
           + L + QSQ +     QP  KR R  ++N  +P   +P P S++    P+    P+NKG 
Sbjct: 41  HSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGT 100

Query: 94  NNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPNWQEIVG------------IRE 153
            NIF+KTRMCAKF+ G CRNG  CNFAHG+ED+RQPP NWQEIVG             RE
Sbjct: 101 ANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERE 160

Query: 154 DDQS--------VSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGR 213
            ++          +NW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+
Sbjct: 161 RERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGK 220

Query: 214 FRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKLCTKWEI 273
            RESS IS+G T     + + S+  E  +  S  VP  +   G  +  +WKT+LC K++I
Sbjct: 221 LRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDI 280

Query: 274 TGHCPFGEKCHFAHGQSELQLFIGR-EGEVSN--TALNVKPLVVAMEA----PSSLATSV 333
           TG CPFG+KCHFAHGQ+EL   +GR EGE  N   ++N + +V A EA    P +  T+ 
Sbjct: 281 TGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTAD 340

Query: 334 PSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLE 345
            S    EG+ K+ LLKW   KKINRIY DW+DDLP+   ST  +E
Sbjct: 341 SSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDDLPVGQKSTKPVE 385

[Close]

BLAST of Carg10891-RA vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.7e-47
Identity = 107/305 (35.08%), Postives = 156/305 (51.15%), Query Frame = 0


Query: 79  NAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPNWQEIVGIREDDQS 138
           N   ++ I  +FFKT++C KF+ G C    +CNFAHG+E++R+PPPNWQEIV   E+   
Sbjct: 76  NTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEE--- 135

Query: 139 VSNWNDDQKI--------------------------IQKMKLCRKFYNGEECPYGDRCNF 198
            +   ++ +I                            K + C+KFY  E CPYGD C F
Sbjct: 136 ATEAREEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTF 195

Query: 199 LHEDPAKFRDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANG-NS 258
           LH       D+  + RES AIS+    +P + G          AA+++   A   NG   
Sbjct: 196 LH-------DEQSKARESVAISL----SPSVGGGGGGGSYNSAAAAAASASAAAGNGPMQ 255

Query: 259 RPSFWKTKLCTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSN----TALNVKPLVV 318
           +PS WKT++C KWE+TG+CPFG KCHFAHG +EL  + G   ++ +       + K  VV
Sbjct: 256 KPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQAVV 315

Query: 319 AMEAPSSLATSVPSSALP--------------------EGQAKQSLLKWKGPKKINRIYA 333
           + +AP+  A +  ++ LP                     GQ ++ + KWKGP KI+RIY 
Sbjct: 316 SAKAPAETA-AASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYG 365

[Close]

BLAST of Carg10891-RA vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.8e-47
Identity = 135/384 (35.16%), Postives = 180/384 (46.88%), Query Frame = 0


Query: 12  PPPLHSYGANGDASGCWS---QYPRNDLFDP-QSQFEVQQPPFKRARNFEENQSSPMPYP 71
           PPP + +   GD S  W+    Y R    +P  +  +   PP K+ R             
Sbjct: 21  PPPDNWFPNLGD-SAVWATEDDYNRAWAMNPDNTSGDNNGPPNKKTR------------- 80

Query: 72  NPPSNSRVQPPNAPMN--KGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPN 131
             PS+S     +A  N  K I  +FFKT++C KF+ G C    +CNFAH VE++R+PPPN
Sbjct: 81  GSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPN 140

Query: 132 WQEIVGIREDDQSVSNWNDDQKIIQ----------------------KMKLCRKFYNGEE 191
           WQEIV   E+++S         +++                      K + C+KFY  E 
Sbjct: 141 WQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEG 200

Query: 192 CPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPD 251
           CPYG+ C FLH       D++ R RES AIS+G  G     G  S         SSS   
Sbjct: 201 CPYGESCTFLH-------DEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVV 260

Query: 252 ALRANGNS---------RPSFWKTKLCTKWEITGHCPFGEKCHFAHGQSELQLF------ 311
            L   G S         +PS WKT++C KWEITG+CPFG KCHFAHG +EL  F      
Sbjct: 261 VLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVE 320

Query: 312 -IGREG-----EVSNTALNVKPLV---------VAMEAPSSLATSV----PSSALPEGQA 334
             G++G     +   T  N K L          V   A +S  T V     SSA+ +   
Sbjct: 321 EEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQKPG 380

[Close]

BLAST of Carg10891-RA vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.2e-26
Identity = 85/264 (32.20%), Postives = 115/264 (43.56%), Query Frame = 0


Query: 86  INNIFFKTRMCAKFKLGLC-RNGASCNFAHGVEDMR---QPPPNWQEIVGIREDDQSVSN 145
           I   FFKT++C KF+ G C  + +SC+FAH  E++R    PPPNWQE V           
Sbjct: 67  IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETV----------- 126

Query: 146 WNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTP 205
                                                    ++ R RES A+S+G  G  
Sbjct: 127 ----------------------------------------TEASRNRESFAVSLGPRG-- 186

Query: 206 LINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKLCTKWEITGHCPFGEKCHFAHG 265
                             +V   L++        WKT++C KW+ TG+CPFG  CHFAHG
Sbjct: 187 ------------------NVAQTLKSPN------WKTRICNKWQTTGYCPFGSHCHFAHG 246

Query: 266 QSELQLFIGR--EGEV---SNTALNVK-----PLVVAMEAP--SSLATSVPSSALPEGQA 325
            SEL  F G   EGE    ++  L+ K       V ++ +P  SS  TS   +  P G  
Sbjct: 247 PSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGVSSQRTSSAVTQKPNGVR 251

Query: 326 KQSLLKWKGPKKINRIYADWLDDL 334
            Q   KWKGP KI+R+Y DW+DD+
Sbjct: 307 TQR--KWKGPDKISRVYGDWIDDI 251

[Close]

BLAST of Carg10891-RA vs. ExPASy Swiss-Prot
Match: Q7XPK1 (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-11
Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 0


Query: 151 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTPLINGSDSSY 210
           K+K C KF++   CP+G+ C+F H  P  ++            ++  T    +N  + + 
Sbjct: 39  KLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQ------------AVAKT----LNLGNPAV 98

Query: 211 PEPIKAASSSVPDALRANGNSRP-SFWKTKLCTKWEITGHCPFGEKCHFAHGQSELQLFI 270
           P P +A     P    A GNS P S  KT++CTK+     C FG+KCHFAHG+ EL    
Sbjct: 99  PAPARA-----PMDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGEREL---- 149

Query: 271 GREGEVSNTALNVKPL 286
           G+   +S+ +    P+
Sbjct: 159 GKPAYMSHESAMAPPM 149

[Close]

BLAST of Carg10891-RA vs. ExPASy TrEMBL
Match: A0A6J1G2M8 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111450240 PE=4 SV=1)

HSP 1 Score: 719.9 bits (1857), Expect = 5.0e-204
Identity = 343/345 (99.42%), Postives = 344/345 (99.71%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL IGREGEVSNTALNVKPLVVAMEAPSSLATSVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300

Query: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
           SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSP+STSQLEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 345

[Close]

BLAST of Carg10891-RA vs. ExPASy TrEMBL
Match: A0A6J1KJ53 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111493694 PE=4 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 6.3e-199
Identity = 336/345 (97.39%), Postives = 338/345 (97.97%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFE QQPPFKRAR FEENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEAQQPPFKRARTFEENQ 60

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTPL+NGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL IGREGEVSNTALNVKPLVVAMEAPS    SVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPS----SVP 300

Query: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
           SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSP+STSQLEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 341

[Close]

BLAST of Carg10891-RA vs. ExPASy TrEMBL
Match: A0A5A7V7E5 (Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00080 PE=4 SV=1)

HSP 1 Score: 644.8 bits (1662), Expect = 2.0e-181
Identity = 309/347 (89.05%), Postives = 325/347 (93.66%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMRGSVIPPPLHSYG+NGDASGCWSQ+PRND FDPQSQFEVQQPP+KRARN EEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSP+ Y NP  NSR  PPNAP+NKGI+NIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSD-SSYPEPIKAASSSVPDALRANGNSRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPL+NGSD SSY EP +A S SV DALRANGN RPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSV 300
           LCTKWEITGHCPFG+KCHFAHGQSELQL+IGREGEVS  ALNVKPL+VAMEA SSL TSV
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTSV 300

Query: 301 -PSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
            PSSALPEGQAK SLLKWKGPKKINRIYADWLDDLPLSP+STS++EG
Sbjct: 301 LPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of Carg10891-RA vs. ExPASy TrEMBL
Match: A0A1S3C7N3 (zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103497405 PE=4 SV=1)

HSP 1 Score: 644.8 bits (1662), Expect = 2.0e-181
Identity = 309/347 (89.05%), Postives = 325/347 (93.66%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMRGSVIPPPLHSYG+NGDASGCWSQ+PRND FDPQSQFEVQQPP+KRARN EEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSP+ Y NP  NSR  PPNAP+NKGI+NIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSD-SSYPEPIKAASSSVPDALRANGNSRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPL+NGSD SSY EP +A S SV DALRANGN RPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSV 300
           LCTKWEITGHCPFG+KCHFAHGQSELQL+IGREGEVS  ALNVKPL+VAMEA SSL TSV
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTSV 300

Query: 301 -PSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
            PSSALPEGQAK SLLKWKGPKKINRIYADWLDDLPLSP+STS++EG
Sbjct: 301 LPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of Carg10891-RA vs. ExPASy TrEMBL
Match: A0A0A0LKX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006070 PE=4 SV=1)

HSP 1 Score: 638.6 bits (1646), Expect = 1.5e-179
Identity = 305/347 (87.90%), Postives = 323/347 (93.08%), Query Frame = 0


Query: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60
           MSFNDMR SVIPPPLHSYG+NGDASGCWSQ+PRND FDPQSQFEVQQPP+KRARN EEN 
Sbjct: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120
           SSP+ Y NP  NSR QPPNAP+NKGI+NIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPLINGSD-SSYPEPIKAASSSVPDALRANGNSRPSFWKTK 240
           RDDSGRFRESSAISIGTTGTPL+NG+D SSY EP +  S SV DALRANGN RPSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATS- 300
           LCTKWEITGHCPFG+KCHFAHGQSELQL+IGREGEVS  ALNVKPL+VAMEA SSL T+ 
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300

Query: 301 VPSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 346
           VPSSALPEGQ K SLLKWKGPKKINRIYADWLDDLPLSP+STS++EG
Sbjct: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of Carg10891-RA vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 299.7 bits (766), Expect = 3.1e-81
Identity = 166/345 (48.12%), Postives = 214/345 (62.03%), Query Frame = 0


Query: 34  NDLFDPQSQFEVQ---QPPFKRARNFEENQSSP-MPYPNPPSNSRVQPPN---APMNKGI 93
           + L + QSQ +     QP  KR R  ++N  +P   +P P S++    P+    P+NKG 
Sbjct: 41  HSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGT 100

Query: 94  NNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPNWQEIVG------------IRE 153
            NIF+KTRMCAKF+ G CRNG  CNFAHG+ED+RQPP NWQEIVG             RE
Sbjct: 101 ANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERE 160

Query: 154 DDQS--------VSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGR 213
            ++          +NW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+
Sbjct: 161 RERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGK 220

Query: 214 FRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKLCTKWEI 273
            RESS IS+G T     + + S+  E  +  S  VP  +   G  +  +WKT+LC K++I
Sbjct: 221 LRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDI 280

Query: 274 TGHCPFGEKCHFAHGQSELQLFIGR-EGEVSN--TALNVKPLVVAMEA----PSSLATSV 333
           TG CPFG+KCHFAHGQ+EL   +GR EGE  N   ++N + +V A EA    P +  T+ 
Sbjct: 281 TGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTAD 340

Query: 334 PSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLE 345
            S    EG+ K+ LLKW   KKINRIY DW+DDLP+   ST  +E
Sbjct: 341 SSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDDLPVGQKSTKPVE 385

[Close]

BLAST of Carg10891-RA vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 189.9 bits (481), Expect = 3.4e-48
Identity = 135/384 (35.16%), Postives = 180/384 (46.88%), Query Frame = 0


Query: 12  PPPLHSYGANGDASGCWS---QYPRNDLFDP-QSQFEVQQPPFKRARNFEENQSSPMPYP 71
           PPP + +   GD S  W+    Y R    +P  +  +   PP K+ R             
Sbjct: 21  PPPDNWFPNLGD-SAVWATEDDYNRAWAMNPDNTSGDNNGPPNKKTR------------- 80

Query: 72  NPPSNSRVQPPNAPMN--KGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMRQPPPN 131
             PS+S     +A  N  K I  +FFKT++C KF+ G C    +CNFAH VE++R+PPPN
Sbjct: 81  GSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPN 140

Query: 132 WQEIVGIREDDQSVSNWNDDQKIIQ----------------------KMKLCRKFYNGEE 191
           WQEIV   E+++S         +++                      K + C+KFY  E 
Sbjct: 141 WQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEG 200

Query: 192 CPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPD 251
           CPYG+ C FLH       D++ R RES AIS+G  G     G  S         SSS   
Sbjct: 201 CPYGESCTFLH-------DEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVV 260

Query: 252 ALRANGNS---------RPSFWKTKLCTKWEITGHCPFGEKCHFAHGQSELQLF------ 311
            L   G S         +PS WKT++C KWEITG+CPFG KCHFAHG +EL  F      
Sbjct: 261 VLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVE 320

Query: 312 -IGREG-----EVSNTALNVKPLV---------VAMEAPSSLATSV----PSSALPEGQA 334
             G++G     +   T  N K L          V   A +S  T V     SSA+ +   
Sbjct: 321 EEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQKPG 380

[Close]

BLAST of Carg10891-RA vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 119.8 bits (299), Expect = 4.4e-27
Identity = 85/264 (32.20%), Postives = 115/264 (43.56%), Query Frame = 0


Query: 86  INNIFFKTRMCAKFKLGLC-RNGASCNFAHGVEDMR---QPPPNWQEIVGIREDDQSVSN 145
           I   FFKT++C KF+ G C  + +SC+FAH  E++R    PPPNWQE V           
Sbjct: 67  IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETV----------- 126

Query: 146 WNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTGTP 205
                                                    ++ R RES A+S+G  G  
Sbjct: 127 ----------------------------------------TEASRNRESFAVSLGPRG-- 186

Query: 206 LINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKLCTKWEITGHCPFGEKCHFAHG 265
                             +V   L++        WKT++C KW+ TG+CPFG  CHFAHG
Sbjct: 187 ------------------NVAQTLKSPN------WKTRICNKWQTTGYCPFGSHCHFAHG 246

Query: 266 QSELQLFIGR--EGEV---SNTALNVK-----PLVVAMEAP--SSLATSVPSSALPEGQA 325
            SEL  F G   EGE    ++  L+ K       V ++ +P  SS  TS   +  P G  
Sbjct: 247 PSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGVSSQRTSSAVTQKPNGVR 251

Query: 326 KQSLLKWKGPKKINRIYADWLDDL 334
            Q   KWKGP KI+R+Y DW+DD+
Sbjct: 307 TQR--KWKGPDKISRVYGDWIDDI 251

[Close]

BLAST of Carg10891-RA vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-05
Identity = 30/107 (28.04%), Postives = 48/107 (44.86%), Query Frame = 0


Query: 92  KTRMCAKF-KLGLCRNGASCNFAHGVEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQ 151
           KT +C K+ + G C  G  C FAHG++++R           IR                 
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV---------IRHPR-------------Y 283

Query: 152 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGT 198
           K ++CR    G+ CPYG RC+F H    + +  +  F+  S++ + T
Sbjct: 284 KTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKPKSSLKLIT 308

[Close]

BLAST of Carg10891-RA vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-05
Identity = 30/107 (28.04%), Postives = 48/107 (44.86%), Query Frame = 0


Query: 92  KTRMCAKF-KLGLCRNGASCNFAHGVEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQ 151
           KT +C K+ + G C  G  C FAHG++++R           IR                 
Sbjct: 223 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV---------IRHPR-------------Y 282

Query: 152 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGT 198
           K ++CR    G+ CPYG RC+F H    + +  +  F+  S++ + T
Sbjct: 283 KTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKPKSSLKLIT 307

The following BLAST results are available for this feature:

BLAST of Carg10891-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599412.1	3.2e-205	100.00	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]
KAG7030401.1	3.2e-205	100.00	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]
XP_022946029.1	1.0e-203	99.42	zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata]	[more]
XP_023546561.1	5.6e-202	98.55	zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999273.1	1.3e-198	97.39	zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima]	[more]

BLAST of Carg10891-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT81	4.3e-80	48.12	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q84UQ3	3.7e-47	35.08	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
Q9LQM3	4.8e-47	35.16	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q5PP65	6.2e-26	32.20	Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q7XPK1	1.1e-11	32.35	Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Carg10891-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2M8	5.0e-204	99.42	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KJ53	6.3e-199	97.39	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7V7E5	2.0e-181	89.05	Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3C7N3	2.0e-181	89.05	zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0LKX6	1.5e-179	87.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006070 PE=4 SV=1	[more]

BLAST of Carg10891-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19360.1	3.1e-81	48.12	Zinc finger (CCCH-type) family protein	[more]
AT1G32360.1	3.4e-48	35.16	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	4.4e-27	32.20	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	1.2e-05	28.04	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.2	1.2e-05	28.04	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 149..176 e-value: 4.1E-5 score: 33.0 coord: 90..116 e-value: 0.0021 score: 27.3 coord: 235..262 e-value: 2.1E-7 score: 40.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 236..262 e-value: 1.6E-10 score: 40.6 coord: 91..115 e-value: 3.5E-5 score: 23.6 coord: 150..174 e-value: 1.4E-7 score: 31.2
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 149..177 score: 15.403383
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 90..117 score: 13.797847
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 235..263 score: 15.844671
None	No IPR available	GENE3D	4.10.1000.10		coord: 149..178 e-value: 2.6E-7 score: 31.9 coord: 229..267 e-value: 2.5E-15 score: 57.5 coord: 84..121 e-value: 6.3E-10 score: 40.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..81
None	No IPR available	PANTHER	PTHR12547:SF121	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	coord: 1..334
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 1..334
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 149..176
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 88..121
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 234..266

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg10891	Carg10891	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10891-RA:2	Carg10891-RA:2	exon
Carg10891-RA:1	Carg10891-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10891-RA:cds	Carg10891-RA:cds	CDS
Carg10891-RA:cds	Carg10891-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg10891-RA	Carg10891-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003677	DNA binding