Carg10102-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10102-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	heterogeneous nuclear ribonucleoprotein 1-like
Location	Carg_Chr17: 782085 .. 783778 (+)
Sequence length	1392
RNA-Seq Expression	Carg10102-RA
Synteny	Carg10102-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGGATCAGGGGAAGCTTTTCATTGGTGGAATTTCATGGGAAACCTCCGAGGATAAGCTTAAGGACTACTTCAGCAACTATGGTGAAGTGATGCATACGGTGGTGATGAGGGATAAGATCACTAGCAGACCTAGAGGGTTTGGGTTCGTCGTTTTCTCAGATCCCTCTGTTCTCGATCGAGTTCTTCAGGATAAGCACACCATCGATGGTAAAACGGTGCGTCAGAATCCCTTTCTTTTACTTTCTCCTTTCCATATTTGGAGTTTTGGCCTTTTTGATTTCTGATTTGGCCCTTTTTACGATGATTCTGGTTGGTGCATTGTTCTGTTCATCAGGCGAGGGATTGACAAAAGGGTCGGAGTTGTTCTGTAATTTCATTTCAGCGTAGTTTATGTTTCCAATATCATCTTGAAACATCAGAAATGGGTTGCTGTGAATCTGTGGAGTTTATACTTTAATCTTCTGTAGTCATATTTGTTTAGTTACATTATAGCATTTGTATTTATATTATTTTATAGGTTGAGGCCAAGAGGGCCTTATCACGGGAAGAACAGCAGACCCCTGCTAGAGCAAGCAATTCTAATGCTACTAGGAATTCTGGTGGTGGTGGTGGTGGTGGTGGAGGAAACATGAGGACTAAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTAACCGAAGAAGGATTTAAGGAGTACTTCGAGGCGTATGGCCATGTAACCGATGTCGTAGTCATGTATGATCAAAATACTAGGCGTCCACGGGGATTTGGATTTATATCGTTTGATACTGAAGAAGCTGTTGACAGGGTTTTGCATAAGACATTTCATGATTTGAATGGTAAACAAGTAGAGGTTAAGCGTGCCCTTCCTAAAGATGCTAATCCAGGTGCGGGTGGTCGTTCGATGGGTGGCGGTGGTTATCAAGGTTATGGGTCTTCTGGTGGTGTTAATTCGAATTCTTATGATAGTCGTATGGATTCGAGTAGGTATATGCAATCTCAGGGCTCTGGTGGAGGGTTCCCACCTTATGGTTCCTCTGGATATAGTAATCCTGGGTATGGGTATGGTTCATCGAACAATGGCATGGGATATGGTGGTTATGGAAATTACAGCGGTTCGAATACTGGGTATGGCGCCCCTGCAGCTGTAGCCTACGGTAACCCGAATGCTGCTAATGCTGGTTATGGGAGTGGTCCTCAAGGTGGACCTAGAAGTTCATGGTCCACTCAAGCTCCCTCTGGGTATGGAGCCATGGGTTATGGTAATGCTGCTCCTTGGGGTGGTGCTCCCGGAGGCAATGCTGGAGCTGGCAGTGGAGGACCTGGATCTGCACCCACTGGTCATTCTCCTGGCGGAGCTGCTGGGTATGGAAACCAGGGTTATGGATATGGTGGGCTTGGTAATCAAGGATATGGTTACGGTGGAGGCGATGGCTCATATGGGAGTCAATCTGGTTATGGTACGGGCGGAGGACGGTCTGGTAGTGCCTCAAATAGCAACGTCGGGGGTGGTCCAAGTGGGGGAGAGATACAAGGGAACAGTGGTGGTTACATGGGAAATGGCTATGGGGATGCTAATGGAAACAACACTGGTTATGGAAATGCTGCATGGAGATCTGATGGAGGACAAGTAGGTTATACAGGTGGTTATGCTGGTGGACAAGCTCGGCAAGCCCAACAACAGTAA

mRNA sequence

ATGGATTCGGATCAGGGGAAGCTTTTCATTGGTGGAATTTCATGGGAAACCTCCGAGGATAAGCTTAAGGACTACTTCAGCAACTATGGTGAAGTGATGCATACGGTGGTGATGAGGGATAAGATCACTAGCAGACCTAGAGGGTTTGGGTTCGTCGTTTTCTCAGATCCCTCTGTTCTCGATCGAGTTCTTCAGGATAAGCACACCATCGATGGTAAAACGGTTGAGGCCAAGAGGGCCTTATCACGGGAAGAACAGCAGACCCCTGCTAGAGCAAGCAATTCTAATGCTACTAGGAATTCTGGTGGTGGTGGTGGTGGTGGTGGAGGAAACATGAGGACTAAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTAACCGAAGAAGGATTTAAGGAGTACTTCGAGGCGTATGGCCATGTAACCGATGTCGTAGTCATGTATGATCAAAATACTAGGCGTCCACGGGGATTTGGATTTATATCGTTTGATACTGAAGAAGCTGTTGACAGGGTTTTGCATAAGACATTTCATGATTTGAATGGTAAACAAGTAGAGGTTAAGCGTGCCCTTCCTAAAGATGCTAATCCAGGTGCGGGTGGTCGTTCGATGGGTGGCGGTGGTTATCAAGGTTATGGGTCTTCTGGTGGTGTTAATTCGAATTCTTATGATAGTCGTATGGATTCGAGTAGGTATATGCAATCTCAGGGCTCTGGTGGAGGGTTCCCACCTTATGGTTCCTCTGGATATAGTAATCCTGGGTATGGGTATGGTTCATCGAACAATGGCATGGGATATGGTGGTTATGGAAATTACAGCGGTTCGAATACTGGGTATGGCGCCCCTGCAGCTGTAGCCTACGGTAACCCGAATGCTGCTAATGCTGGTTATGGGAGTGGTCCTCAAGGTGGACCTAGAAGTTCATGGTCCACTCAAGCTCCCTCTGGGTATGGAGCCATGGGTTATGGTAATGCTGCTCCTTGGGGTGGTGCTCCCGGAGGCAATGCTGGAGCTGGCAGTGGAGGACCTGGATCTGCACCCACTGGTCATTCTCCTGGCGGAGCTGCTGGGTATGGAAACCAGGGTTATGGATATGGTGGGCTTGGTAATCAAGGATATGGTTACGGTGGAGGCGATGGCTCATATGGGAGTCAATCTGGTTATGGTACGGGCGGAGGACGGTCTGGTAGTGCCTCAAATAGCAACGTCGGGGGTGGTCCAAGTGGGGGAGAGATACAAGGGAACAGTGGTGGTTACATGGGAAATGGCTATGGGGATGCTAATGGAAACAACACTGGTTATGGAAATGCTGCATGGAGATCTGATGGAGGACAAGTAGGTTATACAGGTGGTTATGCTGGTGGACAAGCTCGGCAAGCCCAACAACAGTAA

Coding sequence (CDS)

ATGGATTCGGATCAGGGGAAGCTTTTCATTGGTGGAATTTCATGGGAAACCTCCGAGGATAAGCTTAAGGACTACTTCAGCAACTATGGTGAAGTGATGCATACGGTGGTGATGAGGGATAAGATCACTAGCAGACCTAGAGGGTTTGGGTTCGTCGTTTTCTCAGATCCCTCTGTTCTCGATCGAGTTCTTCAGGATAAGCACACCATCGATGGTAAAACGGTTGAGGCCAAGAGGGCCTTATCACGGGAAGAACAGCAGACCCCTGCTAGAGCAAGCAATTCTAATGCTACTAGGAATTCTGGTGGTGGTGGTGGTGGTGGTGGAGGAAACATGAGGACTAAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTAACCGAAGAAGGATTTAAGGAGTACTTCGAGGCGTATGGCCATGTAACCGATGTCGTAGTCATGTATGATCAAAATACTAGGCGTCCACGGGGATTTGGATTTATATCGTTTGATACTGAAGAAGCTGTTGACAGGGTTTTGCATAAGACATTTCATGATTTGAATGGTAAACAAGTAGAGGTTAAGCGTGCCCTTCCTAAAGATGCTAATCCAGGTGCGGGTGGTCGTTCGATGGGTGGCGGTGGTTATCAAGGTTATGGGTCTTCTGGTGGTGTTAATTCGAATTCTTATGATAGTCGTATGGATTCGAGTAGGTATATGCAATCTCAGGGCTCTGGTGGAGGGTTCCCACCTTATGGTTCCTCTGGATATAGTAATCCTGGGTATGGGTATGGTTCATCGAACAATGGCATGGGATATGGTGGTTATGGAAATTACAGCGGTTCGAATACTGGGTATGGCGCCCCTGCAGCTGTAGCCTACGGTAACCCGAATGCTGCTAATGCTGGTTATGGGAGTGGTCCTCAAGGTGGACCTAGAAGTTCATGGTCCACTCAAGCTCCCTCTGGGTATGGAGCCATGGGTTATGGTAATGCTGCTCCTTGGGGTGGTGCTCCCGGAGGCAATGCTGGAGCTGGCAGTGGAGGACCTGGATCTGCACCCACTGGTCATTCTCCTGGCGGAGCTGCTGGGTATGGAAACCAGGGTTATGGATATGGTGGGCTTGGTAATCAAGGATATGGTTACGGTGGAGGCGATGGCTCATATGGGAGTCAATCTGGTTATGGTACGGGCGGAGGACGGTCTGGTAGTGCCTCAAATAGCAACGTCGGGGGTGGTCCAAGTGGGGGAGAGATACAAGGGAACAGTGGTGGTTACATGGGAAATGGCTATGGGGATGCTAATGGAAACAACACTGGTTATGGAAATGCTGCATGGAGATCTGATGGAGGACAAGTAGGTTATACAGGTGGTTATGCTGGTGGACAAGCTCGGCAAGCCCAACAACAGTAA

Protein sequence

MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYMGNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ

Homology

[Close]

BLAST of Carg10102-RA vs. NCBI nr
Match: KAG7013472.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 867.1 bits (2239), Expect = 7.0e-248
Identity = 463/463 (100.00%), Postives = 463/463 (100.00%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL
Sbjct: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240
           NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG
Sbjct: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240

Query: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300
           GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG
Sbjct: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300

Query: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360
           PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN
Sbjct: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360

Query: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420
           QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM
Sbjct: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420

Query: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ
Sbjct: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 463

[Close]

BLAST of Carg10102-RA vs. NCBI nr
Match: KAG6574899.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 865.5 bits (2235), Expect = 2.0e-247
Identity = 462/463 (99.78%), Postives = 462/463 (99.78%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL
Sbjct: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240
           NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG
Sbjct: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240

Query: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300
           GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG
Sbjct: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300

Query: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360
           PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAG GGPGSAPTGHSPGGAAGYGN
Sbjct: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGGGGPGSAPTGHSPGGAAGYGN 360

Query: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420
           QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM
Sbjct: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420

Query: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ
Sbjct: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 463

[Close]

BLAST of Carg10102-RA vs. NCBI nr
Match: XP_023548146.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 859.8 bits (2220), Expect = 1.1e-245
Identity = 462/467 (98.93%), Postives = 463/467 (99.14%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS----GGGGGGGGGNMRTKK 120
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS    GGGGGGGGGNMRTKK
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGGGGGNMRTKK 120

Query: 121 IFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKT 180
           IFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKT
Sbjct: 121 IFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKT 180

Query: 181 FHDLNGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQ 240
           FHDLNGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQ
Sbjct: 181 FHDLNGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQ 240

Query: 241 GSGGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAG 300
           GSGGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAG
Sbjct: 241 GSGGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAG 300

Query: 301 YGSGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA 360
           YGSGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA
Sbjct: 301 YGSGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA 360

Query: 361 GYGNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNS 420
           GYGNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNS
Sbjct: 361 GYGNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNS 420

Query: 421 GGYMGNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           GGYMGNGYGDANGNN+GYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ
Sbjct: 421 GGYMGNGYGDANGNNSGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 467

[Close]

BLAST of Carg10102-RA vs. NCBI nr
Match: XP_022959237.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata])

HSP 1 Score: 857.1 bits (2213), Expect = 7.2e-245
Identity = 460/463 (99.35%), Postives = 460/463 (99.35%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS  GGGGGGGNMRTKKIFVG
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS--GGGGGGGNMRTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL
Sbjct: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240
           NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDS MDSSRYMQSQGSGG
Sbjct: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSHMDSSRYMQSQGSGG 240

Query: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300
           GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG
Sbjct: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300

Query: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360
           PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN
Sbjct: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360

Query: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420
           QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM
Sbjct: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420

Query: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ
Sbjct: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 461

[Close]

BLAST of Carg10102-RA vs. NCBI nr
Match: XP_023006071.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 843.6 bits (2178), Expect = 8.3e-241
Identity = 453/463 (97.84%), Postives = 455/463 (98.27%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS   GGGGGGNMRTKKIFVG
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS---GGGGGGNMRTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL
Sbjct: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240
           NGKQVEVKRALPKDANPGAGG SMGG GYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG
Sbjct: 181 NGKQVEVKRALPKDANPGAGGHSMGGSGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240

Query: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300
           GFPPYGSSGYSNPGYGYGSSNNGMGYGGYG+YS SNTGYGAPAAVAYGNPNAANAGYGSG
Sbjct: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGSYSSSNTGYGAPAAVAYGNPNAANAGYGSG 300

Query: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360
           PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN
Sbjct: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360

Query: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420
           QGYGYGGLGNQGYGYGGGDGSYGSQSGYG GGGRSGSASNSNVGG PSGGE+QGNSGGYM
Sbjct: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGAGGGRSGSASNSNVGGAPSGGELQGNSGGYM 420

Query: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ
Sbjct: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 460

[Close]

BLAST of Carg10102-RA vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 2.5e-123
Identity = 274/461 (59.44%), Postives = 315/461 (68.33%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLF+GGISWET EDKL+++F+NYGEV   +VMRDK+T RPRGFGFV+FSDPSVL
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQ+KH+ID + V+ KRA+SREEQQ   R  N N +R+SGG         +TKKIFVG
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYN-----KTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLT+E F++YFE YG VTDV +MYDQ T RPRGFGF+SFD+E+AVD VLHKTFHDL
Sbjct: 121 GLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240
           +GKQVEVKRALPKDANPG GGRSMGGGG  GY   GG N +SYD RMDS+R++Q Q  G 
Sbjct: 181 SGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGYGG-NESSYDGRMDSNRFLQHQSVGN 240

Query: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300
           G P YGSSGY   G GYG+ +NG GYG YG Y+GS  GYGA A   YG  N   AGYGS 
Sbjct: 241 GLPSYGSSGY---GAGYGNGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIPGAGYGSS 300

Query: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360
               PR+SW T A SGYG  GYG+         G A +G G PG+AP   SP   +GY N
Sbjct: 301 TGVAPRNSWDTPASSGYGNPGYGS---------GAAHSGYGVPGAAPPTQSP---SGYSN 360

Query: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420
           QGYGYG       GY G D  YG+Q+ YG  GGR     ++N G           SGGYM
Sbjct: 361 QGYGYG-------GYSGSDSGYGNQAAYGVVGGRPSGGGSNNPG-----------SGGYM 411

Query: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQ 462
           G GYGD           +WRSD  Q GY GGY  GQ RQ Q
Sbjct: 421 GGGYGD----------GSWRSDPSQ-GYGGGYNDGQGRQGQ 411

[Close]

BLAST of Carg10102-RA vs. ExPASy Swiss-Prot
Match: P51989 (Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis OX=8355 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.5e-38
Identity = 133/364 (36.54%), Postives = 179/364 (49.18%), Query Frame = 0


Query: 7   KLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQD 66
           KLFIGG+S+ET+E+ L++Y+  +G +   VVMRD  + R RGFGFV FS  + +D  +  
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69

Query: 67  K-HTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVGGLPPT 126
           + HTIDG+ VE KRA++REE   P                   G ++  KK+FVGG+   
Sbjct: 70  RPHTIDGRVVEPKRAVAREESAKP-------------------GAHVTVKKLFVGGIKED 129

Query: 127 LTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQV 186
             E   +EYFE YG +  + ++ D+ + + RGF F++FD  + VD+++ + +H +NG   
Sbjct: 130 TEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNA 189

Query: 187 EVKRALPKD-------------ANPGAGGRSMGG-----------GGYQGYGSSGGVNSN 246
           EV++AL K               N G G    GG           GG  GYG   G   N
Sbjct: 190 EVRKALSKQEMQDVQNTRNNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGYGGGRGYGDN 249

Query: 247 SYDSRMDSSRYMQSQGSG--GGFPPYGSSGYSNPGYGYGSSNNGMGY-GGYGNYSGSNTG 306
            Y+       Y   QG G  GG P YG       G G G  N G GY GGY NY G N G
Sbjct: 250 GYNG------YGGGQGGGNYGGGPSYGGGRGGGYGGGAGYGNQGGGYGGGYDNYGGGNYG 309

Query: 307 YGAPAAVAYGNPNAANAGYGSGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGA 343
            G      +GN N  ++ YG    GG   ++      G G  G GN  P G A GGN G 
Sbjct: 310 -GGGNYNDFGNYNQQSSNYGPMKSGG---NFGGNRSMGGGPYGGGNYGP-GNASGGN-GG 342

[Close]

BLAST of Carg10102-RA vs. ExPASy Swiss-Prot
Match: O88569 (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus OX=10090 GN=Hnrnpa2b1 PE=1 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-34
Identity = 136/391 (34.78%), Postives = 189/391 (48.34%), Query Frame = 0


Query: 7   KLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQD 66
           KLFIGG+S+ET+E+ L++Y+  +G++   VVMRD  + R RGFGFV FS  + +D  +  
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query: 67  K-HTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVGGLPPT 126
           + H+IDG+ VE KRA++REE   P                   G ++  KK+FVGG+   
Sbjct: 82  RPHSIDGRVVEPKRAVAREESGKP-------------------GAHVTVKKLFVGGIKED 141

Query: 127 LTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQV 186
             E   ++YFE YG +  + ++ D+ + + RGFGF++FD  + VD+++ + +H +NG   
Sbjct: 142 TEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNA 201

Query: 187 EVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGGGFPPY 246
           EV++AL +           G GG  G+G                     S+G GG F P 
Sbjct: 202 EVRKALSRQEMQEVQSSRSGRGGNFGFG--------------------DSRGGGGNFGPG 261

Query: 247 GSSGYSNPGYGYGSSNN-GMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSGPQGG 306
             S +     GYGS    G GY GYG   G     G+P    YG       GYG    GG
Sbjct: 262 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSP---GYG---GGRGGYGG---GG 321

Query: 307 PRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGS----GGPGSAPTGHSP---GGAAG 366
           P          GYG  G G    +    GGN G+GS    G     P+ + P   G   G
Sbjct: 322 P----------GYGNQGGGYGGGYDNYGGGNYGSGSYNDFGNYNQQPSNYGPMKSGNFGG 353

Query: 367 YGNQGYGYGGLGNQGYGYGGGDGSYGSQSGY 389
             N G  YGG GN G G  GG G YG +S Y
Sbjct: 382 SRNMGGPYGG-GNYGPGGSGGSGGYGGRSRY 353

[Close]

BLAST of Carg10102-RA vs. ExPASy Swiss-Prot
Match: Q2HJ60 (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus OX=9913 GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.7e-34
Identity = 135/391 (34.53%), Postives = 189/391 (48.34%), Query Frame = 0


Query: 7   KLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQD 66
           KLFIGG+S+ET+E+ L++Y+  +G++   VVMRD  + R RGFGFV FS  + +D  +  
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query: 67  K-HTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVGGLPPT 126
           + H+IDG+ VE KRA++REE   P                   G ++  KK+FVGG+   
Sbjct: 70  RPHSIDGRVVEPKRAVAREESGKP-------------------GAHVTVKKLFVGGIKED 129

Query: 127 LTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQV 186
             E   ++YFE YG +  + ++ D+ + + RGFGF++FD  + VD+++ + +H +NG   
Sbjct: 130 TEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNA 189

Query: 187 EVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGGGFPPY 246
           EV++AL +           G GG  G+G                     S+G GG F P 
Sbjct: 190 EVRKALSRQEMQEVQSSRSGRGGNFGFG--------------------DSRGGGGNFGPG 249

Query: 247 GSSGYSNPGYGYGSSNN-GMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSGPQGG 306
             S +     GYGS    G GY GYG   G     G+P    YG       GYG    GG
Sbjct: 250 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSP---GYG---GGRGGYGG---GG 309

Query: 307 PRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGS----GGPGSAPTGHSP---GGAAG 366
           P          GYG  G G    +    GGN G+G+    G     P+ + P   G   G
Sbjct: 310 P----------GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGG 341

Query: 367 YGNQGYGYGGLGNQGYGYGGGDGSYGSQSGY 389
             N G  YGG GN G G  GG G YG +S Y
Sbjct: 370 SRNMGGPYGG-GNYGPGGSGGSGGYGGRSRY 341

[Close]

BLAST of Carg10102-RA vs. ExPASy Swiss-Prot
Match: P22626 (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 3.7e-34
Identity = 135/391 (34.53%), Postives = 189/391 (48.34%), Query Frame = 0


Query: 7   KLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQD 66
           KLFIGG+S+ET+E+ L++Y+  +G++   VVMRD  + R RGFGFV FS  + +D  +  
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query: 67  K-HTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVGGLPPT 126
           + H+IDG+ VE KRA++REE   P                   G ++  KK+FVGG+   
Sbjct: 82  RPHSIDGRVVEPKRAVAREESGKP-------------------GAHVTVKKLFVGGIKED 141

Query: 127 LTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQV 186
             E   ++YFE YG +  + ++ D+ + + RGFGF++FD  + VD+++ + +H +NG   
Sbjct: 142 TEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNA 201

Query: 187 EVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGGGFPPY 246
           EV++AL +           G GG  G+G                     S+G GG F P 
Sbjct: 202 EVRKALSRQEMQEVQSSRSGRGGNFGFG--------------------DSRGGGGNFGPG 261

Query: 247 GSSGYSNPGYGYGSSNN-GMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSGPQGG 306
             S +     GYGS    G GY GYG   G     G+P    YG       GYG    GG
Sbjct: 262 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSP---GYG---GGRGGYGG---GG 321

Query: 307 PRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGS----GGPGSAPTGHSP---GGAAG 366
           P          GYG  G G    +    GGN G+G+    G     P+ + P   G   G
Sbjct: 322 P----------GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGG 353

Query: 367 YGNQGYGYGGLGNQGYGYGGGDGSYGSQSGY 389
             N G  YGG GN G G  GG G YG +S Y
Sbjct: 382 SRNMGGPYGG-GNYGPGGSGGSGGYGGRSRY 353

[Close]

BLAST of Carg10102-RA vs. ExPASy TrEMBL
Match: A0A6J1H3Z2 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111460283 PE=4 SV=1)

HSP 1 Score: 857.1 bits (2213), Expect = 3.5e-245
Identity = 460/463 (99.35%), Postives = 460/463 (99.35%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS  GGGGGGGNMRTKKIFVG
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS--GGGGGGGNMRTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL
Sbjct: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240
           NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDS MDSSRYMQSQGSGG
Sbjct: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSHMDSSRYMQSQGSGG 240

Query: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300
           GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG
Sbjct: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300

Query: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360
           PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN
Sbjct: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360

Query: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420
           QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM
Sbjct: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420

Query: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ
Sbjct: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 461

[Close]

BLAST of Carg10102-RA vs. ExPASy TrEMBL
Match: A0A6J1KWS0 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111498928 PE=4 SV=1)

HSP 1 Score: 843.6 bits (2178), Expect = 4.0e-241
Identity = 453/463 (97.84%), Postives = 455/463 (98.27%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS   GGGGGGNMRTKKIFVG
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS---GGGGGGNMRTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL
Sbjct: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240
           NGKQVEVKRALPKDANPGAGG SMGG GYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG
Sbjct: 181 NGKQVEVKRALPKDANPGAGGHSMGGSGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240

Query: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300
           GFPPYGSSGYSNPGYGYGSSNNGMGYGGYG+YS SNTGYGAPAAVAYGNPNAANAGYGSG
Sbjct: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGSYSSSNTGYGAPAAVAYGNPNAANAGYGSG 300

Query: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360
           PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN
Sbjct: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360

Query: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420
           QGYGYGGLGNQGYGYGGGDGSYGSQSGYG GGGRSGSASNSNVGG PSGGE+QGNSGGYM
Sbjct: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGAGGGRSGSASNSNVGGAPSGGELQGNSGGYM 420

Query: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ
Sbjct: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 460

[Close]

BLAST of Carg10102-RA vs. ExPASy TrEMBL
Match: A0A6J1CDB1 (heterogeneous nuclear ribonucleoprotein 1-like OS=Momordica charantia OX=3673 GN=LOC111009685 PE=4 SV=1)

HSP 1 Score: 802.0 bits (2070), Expect = 1.3e-228
Identity = 433/467 (92.72%), Postives = 446/467 (95.50%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYF NYG+V+HTVVMRDKITSRPRGFGFVVF+DP++L
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFGNYGDVLHTVVMRDKITSRPRGFGFVVFADPAIL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQ+KHTIDGKTVEAKRALSREEQQTPARA NSNATRNS  GGG GGG+MRTKKIFVG
Sbjct: 61  DRVLQEKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNS--GGGSGGGSMRTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL
Sbjct: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSM----GGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQ 240
           NGKQVEVKRALPKDANPGAGGRSM    GGGGYQ YGSSGG NSNSYD+RMDS+RYMQSQ
Sbjct: 181 NGKQVEVKRALPKDANPGAGGRSMGGGAGGGGYQSYGSSGGANSNSYDNRMDSNRYMQSQ 240

Query: 241 GSGGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAG 300
           GS GGFPPYGSSGY+NPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPN ANAG
Sbjct: 241 GSSGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNVANAG 300

Query: 301 YGSGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA 360
           YGSGPQGGPRS+WS QAPSGYGAMGYGNAAPWGGA G NAGAGSGGPGSAPTGHSPGGAA
Sbjct: 301 YGSGPQGGPRSTWSGQAPSGYGAMGYGNAAPWGGAAGNNAGAGSGGPGSAPTGHSPGGAA 360

Query: 361 GYGNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNS 420
           GYGNQGYGYGG GNQGYGYGGGDGSYGSQSGYG  GGRSGSASNSNVGGGPSGGE+QGNS
Sbjct: 361 GYGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGAAGGRSGSASNSNVGGGPSGGELQGNS 420

Query: 421 GGYMGNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           GGYMGNGYGDANG N+GYGNAAWRSDGGQVGYTGGYA GQARQAQQQ
Sbjct: 421 GGYMGNGYGDANG-NSGYGNAAWRSDGGQVGYTGGYAAGQARQAQQQ 464

[Close]

BLAST of Carg10102-RA vs. ExPASy TrEMBL
Match: A0A6J1KMT7 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111494753 PE=4 SV=1)

HSP 1 Score: 797.0 bits (2057), Expect = 4.3e-227
Identity = 432/467 (92.51%), Postives = 443/467 (94.86%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKD+F++YGEVMHTVVMRDKITS+PRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDHFNSYGEVMHTVVMRDKITSKPRGFGFVVFADPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARA N NATRNS      GGGNMRTKKIFVG
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNLNATRNS------GGGNMRTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLTEEGFKEYFE YG VTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL
Sbjct: 121 GLPPTLTEEGFKEYFETYGDVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGG----GGYQGYGSSGGVNSNSYDSRMDSSRYMQSQ 240
           NGKQVEVKRALPKDANPGAGGRSMGG    GGYQ YGSSGGVNSNSYDSRMDS+RYMQSQ
Sbjct: 181 NGKQVEVKRALPKDANPGAGGRSMGGSASSGGYQTYGSSGGVNSNSYDSRMDSNRYMQSQ 240

Query: 241 GSGGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAG 300
           GS GGFPPYGSSGY+NPGYGYGSSNNGMGYGGYGNYSGSNTGYGAP+AVAYGNPN ANAG
Sbjct: 241 GSSGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPSAVAYGNPNVANAG 300

Query: 301 YGSGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA 360
           Y SGPQGGPRSSWS QAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA
Sbjct: 301 YASGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA 360

Query: 361 GYGNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNS 420
           GYGNQGYGYGG GNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGE+QGNS
Sbjct: 361 GYGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGELQGNS 420

Query: 421 GGYMGNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           GGYM +GYGDANG NTGYGNA WRSDGGQVGYTGGY GGQARQ+QQQ
Sbjct: 421 GGYMNSGYGDANG-NTGYGNAGWRSDGGQVGYTGGYGGGQARQSQQQ 460

[Close]

BLAST of Carg10102-RA vs. ExPASy TrEMBL
Match: A0A0A0LLG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171930 PE=4 SV=1)

HSP 1 Score: 795.0 bits (2052), Expect = 1.6e-226
Identity = 438/468 (93.59%), Postives = 446/468 (95.30%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 107 MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 166

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSN  RNS   GG GGGNMRTKKIFVG
Sbjct: 167 DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNG-RNS---GGSGGGNMRTKKIFVG 226

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL
Sbjct: 227 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 286

Query: 181 NGKQVEVKRALPKDANPGAGGRSM----GGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQ 240
           NGKQVEVKRALPKDANPGAGGR+M    G GGYQGYGSSGGVNSNSYD+RMDS+RYMQSQ
Sbjct: 287 NGKQVEVKRALPKDANPGAGGRTMSGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQ 346

Query: 241 GSGGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAG 300
           GS GGFPPYGSSGY+NP YGYGSSNNGMGYGGYGNYSGSNTG+GAP AVAYGNPN ANAG
Sbjct: 347 GSSGGFPPYGSSGYNNPAYGYGSSNNGMGYGGYGNYSGSNTGFGAPTAVAYGNPNVANAG 406

Query: 301 YGSGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGG-A 360
           YGSGPQGGPR+SWS QAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGG A
Sbjct: 407 YGSGPQGGPRNSWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA 466

Query: 361 AGYGNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGN 420
           AGYGNQGYGYGG GNQGYGYGGGDGSYGSQSGYGT GGRSGSASNSNVGGGPSGGE+QGN
Sbjct: 467 AGYGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTTGGRSGSASNSNVGGGPSGGELQGN 526

Query: 421 SGGYMGNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
           +  YMGNGYGDANG NTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ
Sbjct: 527 N-AYMGNGYGDANG-NTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 568

[Close]

BLAST of Carg10102-RA vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 443.7 bits (1140), Expect = 1.8e-124
Identity = 274/461 (59.44%), Postives = 315/461 (68.33%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLF+GGISWET EDKL+++F+NYGEV   +VMRDK+T RPRGFGFV+FSDPSVL
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQ+KH+ID + V+ KRA+SREEQQ   R  N N +R+SGG         +TKKIFVG
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYN-----KTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPPTLT+E F++YFE YG VTDV +MYDQ T RPRGFGF+SFD+E+AVD VLHKTFHDL
Sbjct: 121 GLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGVNSNSYDSRMDSSRYMQSQGSGG 240
           +GKQVEVKRALPKDANPG GGRSMGGGG  GY   GG N +SYD RMDS+R++Q Q  G 
Sbjct: 181 SGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGYGG-NESSYDGRMDSNRFLQHQSVGN 240

Query: 241 GFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYGSG 300
           G P YGSSGY   G GYG+ +NG GYG YG Y+GS  GYGA A   YG  N   AGYGS 
Sbjct: 241 GLPSYGSSGY---GAGYGNGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIPGAGYGSS 300

Query: 301 PQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGN 360
               PR+SW T A SGYG  GYG+         G A +G G PG+AP   SP   +GY N
Sbjct: 301 TGVAPRNSWDTPASSGYGNPGYGS---------GAAHSGYGVPGAAPPTQSP---SGYSN 360

Query: 361 QGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYM 420
           QGYGYG       GY G D  YG+Q+ YG  GGR     ++N G           SGGYM
Sbjct: 361 QGYGYG-------GYSGSDSGYGNQAAYGVVGGRPSGGGSNNPG-----------SGGYM 411

Query: 421 GNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQ 462
           G GYGD           +WRSD  Q GY GGY  GQ RQ Q
Sbjct: 421 GGGYGD----------GSWRSDPSQ-GYGGGYNDGQGRQGQ 411

[Close]

BLAST of Carg10102-RA vs. TAIR 10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 431.4 bits (1108), Expect = 9.1e-121
Identity = 272/467 (58.24%), Postives = 319/467 (68.31%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           M+SDQGKLFIGGISW+T E+ L++YFSN+GEV+   VMR+K T RPRGFGFV FSDP+V+
Sbjct: 1   MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           DRVLQDKH ID + V+ KRA+SREEQ    R+   NA+RN        G N+RTKKIFVG
Sbjct: 61  DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNF-----DSGANVRTKKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLPP LT + F+ YFE YG V+D V+M DQ T+RPRGFGF+SFD+E++VD VLHKTFHDL
Sbjct: 121 GLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDL 180

Query: 181 NGKQVEVKRALPKDANPG---AGGRSMGG-GGYQGYGSSGGVNSNSYDSRMDSSRYMQSQ 240
           NGKQVEVKRALPKDANPG    GGR  GG GG+ GYG SGG   + Y+ R+DS+RYMQ Q
Sbjct: 181 NGKQVEVKRALPKDANPGIASGGGRGSGGAGGFPGYGGSGG---SGYEGRVDSNRYMQPQ 240

Query: 241 GSGGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAG 300
            +G G+PPYG SGY   GYGYGS  NG+GYGG+G       GYG PA   YGNP+   AG
Sbjct: 241 NTGSGYPPYGGSGYGT-GYGYGS--NGVGYGGFG-------GYGNPAGAPYGNPSVPGAG 300

Query: 301 YGSGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA 360
           +GS    GPRSSW  QAPSGYG +GYGNAAPWG         GSGGPGSA  G + G +A
Sbjct: 301 FGS----GPRSSWGAQAPSGYGNVGYGNAAPWG---------GSGGPGSAVMGQA-GASA 360

Query: 361 GYGNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNS 420
           GY          G+QGYGYGG D SYG+ S YG  GGRSG+  N++ GG           
Sbjct: 361 GY----------GSQGYGYGGNDSSYGTPSAYGAVGGRSGNMPNNHGGG----------- 404

Query: 421 GGYMGNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 464
                 GY DA   + GYGN   + + GQ GY GGY  G  RQAQQQ
Sbjct: 421 ------GYADALDGSGGYGN--HQGNNGQAGYGGGY--GSGRQAQQQ 404

[Close]

BLAST of Carg10102-RA vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.2 bits (544), Expect = 2.3e-55
Identity = 199/493 (40.37%), Postives = 267/493 (54.16%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           M SD GKLFIGGISW+T+E++LK+YFS++GEV+  V+++D+ T R RGFGFVVF+DP+V 
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           + V+ +KH IDG+ VEAK+A+ R++Q    R SNS++ + S GG G      RT+KIFVG
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNR-SNSSSIQGSPGGPG------RTRKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLP ++TE  FK YFE +G  TDVVVMYD NT+RPRGFGFI++D+EEAV++VL KTFH+L
Sbjct: 121 GLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGY--------GSSGGVNS---NSYDSRMDS 240
           NGK VEVKRA+PK+ +PG     +G G   G         G + G N      Y  RMD 
Sbjct: 181 NGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMD- 240

Query: 241 SRYMQSQGSGGGFPPYGS--SGYSNPGYGYGSSNN-----GMGYGGYGNYSGSNTGYGAP 300
                     G F P G+  SG++N   GYG + N       G+ G  NY+G N  YG  
Sbjct: 241 ----------GRFSPVGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNG-NVDYGRG 300

Query: 301 AAVAY-GNPN--AANAGYGSGPQGGPRSSWSTQAPSGYGAMG-----------YGNAAPW 360
            +  Y GN N      GY  G  GG  S +S+   + +G  G             N    
Sbjct: 301 MSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMG 360

Query: 361 GGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGNQG--YGYGGLGNQGYGYGGGDGSYGSQS 420
           G + G N  +G  G      G   GG     N+   +GYGG G  G+G   G G Y +++
Sbjct: 361 GSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGL--GTGGYAARN 420

Query: 421 GYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYMGNGYGDANGNNTGYGNAAWRS----D 456
                   S S S+++            N+ GY   G  +  GN   Y +  WRS     
Sbjct: 421 PGANKAAPSSSFSSASA----------TNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPET 462

[Close]

BLAST of Carg10102-RA vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.2 bits (544), Expect = 2.3e-55
Identity = 199/493 (40.37%), Postives = 267/493 (54.16%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           M SD GKLFIGGISW+T+E++LK+YFS++GEV+  V+++D+ T R RGFGFVVF+DP+V 
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120
           + V+ +KH IDG+ VEAK+A+ R++Q    R SNS++ + S GG G      RT+KIFVG
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNR-SNSSSIQGSPGGPG------RTRKIFVG 120

Query: 121 GLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDL 180
           GLP ++TE  FK YFE +G  TDVVVMYD NT+RPRGFGFI++D+EEAV++VL KTFH+L
Sbjct: 121 GLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 180

Query: 181 NGKQVEVKRALPKDANPGAGGRSMGGGGYQGY--------GSSGGVNS---NSYDSRMDS 240
           NGK VEVKRA+PK+ +PG     +G G   G         G + G N      Y  RMD 
Sbjct: 181 NGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMD- 240

Query: 241 SRYMQSQGSGGGFPPYGS--SGYSNPGYGYGSSNN-----GMGYGGYGNYSGSNTGYGAP 300
                     G F P G+  SG++N   GYG + N       G+ G  NY+G N  YG  
Sbjct: 241 ----------GRFSPVGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNG-NVDYGRG 300

Query: 301 AAVAY-GNPN--AANAGYGSGPQGGPRSSWSTQAPSGYGAMG-----------YGNAAPW 360
            +  Y GN N      GY  G  GG  S +S+   + +G  G             N    
Sbjct: 301 MSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMG 360

Query: 361 GGAPGGNAGAGSGGPGSAPTGHSPGGAAGYGNQG--YGYGGLGNQGYGYGGGDGSYGSQS 420
           G + G N  +G  G      G   GG     N+   +GYGG G  G+G   G G Y +++
Sbjct: 361 GSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGL--GTGGYAARN 420

Query: 421 GYGTGGGRSGSASNSNVGGGPSGGEIQGNSGGYMGNGYGDANGNNTGYGNAAWRS----D 456
                   S S S+++            N+ GY   G  +  GN   Y +  WRS     
Sbjct: 421 PGANKAAPSSSFSSASA----------TNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPET 462

[Close]

BLAST of Carg10102-RA vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 201.4 bits (511), Expect = 1.5e-51
Identity = 194/467 (41.54%), Postives = 251/467 (53.75%), Query Frame = 0


Query: 3   SDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDR 62
           SD GKLFIGGISW+T E++L++YF  YG+++  V+MRD+ T R RGFGF+VF+DPSV +R
Sbjct: 12  SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71

Query: 63  VLQDKHTIDGKTVEAKRALSREEQQTPAR-ASNSNATRNSGGGGGGGGGNMRTKKIFVGG 122
           V+ DKH IDG+TVEAK+A+ R++QQ   R AS  +    S GG GGG    RTKKIFVGG
Sbjct: 72  VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGA---RTKKIFVGG 131

Query: 123 LPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLN 182
           LP ++TE  FK YF+ +G + DVVVMYD NT+RPRGFGFI+FD+EE+VD VLHKTFH+LN
Sbjct: 132 LPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELN 191

Query: 183 GKQVEVKRALPKDANPGAGGRSMGGGGYQGYGSSGGV-----NSNSYDSRMDSSRYMQSQ 242
           GK VEVKRA+PK+ +     RS       GYG++ GV     ++NSY +         + 
Sbjct: 192 GKMVEVKRAVPKELSSTTPNRS----PLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNL 251

Query: 243 GSGGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGN---PNAA 302
           GS G F P GS   +   +G G +          N+ G+  GY       Y N   PN  
Sbjct: 252 GSAGRFSPIGSGRNAFSSFGLGLNQE---LNLNSNFDGNTLGYSRIPGNQYFNSASPNRY 311

Query: 303 NA--GYGSGPQG---GPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPT 362
           N+  GY  G        R  W  ++ S       G +    G   GN G  S    +   
Sbjct: 312 NSPIGYNRGDSAYNPSNRDLWGNRSDSSGPGWNLGVSV---GNNRGNWGLSSVVSDNNGY 371

Query: 363 GHSPGGAAGYGNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPS 422
           G S G  AG G  G  + G  N      G DGS G    Y      S S    ++    S
Sbjct: 372 GRSYG--AGSGLSGLSFAGNTN------GFDGSIGEL--YRGSSVYSDSTWQQSMPHHQS 431

Query: 423 GGEIQGNSGGYMGNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGG 456
             E+ G S  Y   G+G  N  +    NA+        GY+G Y  G
Sbjct: 432 SNELDGLSRSY---GFGIDNVGSDPSANAS-------EGYSGNYNVG 445

The following BLAST results are available for this feature:

BLAST of Carg10102-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013472.1	7.0e-248	100.00	Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp...	[more]
KAG6574899.1	2.0e-247	99.78	Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_023548146.1	1.1e-245	98.93	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959237.1	7.2e-245	99.35	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata]	[more]
XP_023006071.1	8.3e-241	97.84	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima]	[more]

BLAST of Carg10102-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	2.5e-123	59.44	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
P51989	5.5e-38	36.54	Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis OX=8355 P...	[more]
O88569	1.7e-34	34.78	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus OX=10090 GN=Hnrnp...	[more]
Q2HJ60	3.7e-34	34.53	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus OX=9913 GN=HNRNPA2B...	[more]
P22626	3.7e-34	34.53	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA...	[more]

BLAST of Carg10102-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3Z2	3.5e-245	99.35	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KWS0	4.0e-241	97.84	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CDB1	1.3e-228	92.72	heterogeneous nuclear ribonucleoprotein 1-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1KMT7	4.3e-227	92.51	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0LLG6	1.6e-226	93.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171930 PE=4 SV=1	[more]

BLAST of Carg10102-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14300.1	1.8e-124	59.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G33410.1	9.1e-121	58.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.1	2.3e-55	40.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.2	2.3e-55	40.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	1.5e-51	41.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 116..188 e-value: 6.0E-25 score: 98.9 coord: 7..78 e-value: 6.0E-20 score: 82.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..75 e-value: 1.1E-14 score: 54.0 coord: 117..175 e-value: 5.3E-16 score: 58.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 115..192 score: 18.580891
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..82 score: 16.84124
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 87..210 e-value: 7.1E-27 score: 96.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..86 e-value: 3.5E-24 score: 86.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 386..425
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..353
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 386..409
None	No IPR available	PANTHER	PTHR48035	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1	coord: 1..461
None	No IPR available	PANTHER	PTHR48035:SF2	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1	coord: 1..461
None	No IPR available	CDD	cd12325	RRM1_hnRNPA_hnRNPD_like	coord: 8..78 e-value: 3.43291E-36 score: 126.161
IPR034131	DAZ-associated protein 1, RNA recognition motif 2	CDD	cd12327	RRM2_DAZAP1	coord: 113..192 e-value: 5.21202E-45 score: 149.823
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..111
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 114..218

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg10102	Carg10102	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10102-RA:2	Carg10102-RA:2	exon
Carg10102-RA:1	Carg10102-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10102-RA:cds	Carg10102-RA:cds	CDS
Carg10102-RA:cds	Carg10102-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg10102-RA	Carg10102-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding