Carg09908-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09908-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosome biogenesis regulatory protein
Location	Carg_Chr10: 2591168 .. 2593584 (+)
Sequence length	1197
RNA-Seq Expression	Carg09908-RA
Synteny	Carg09908-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACGCCGCAGGAAGTTCTGGTCGACATTGGTCATCTAATGGCGTTCAATCCTCACCACCATTTCACTTCCCCGCCGTCCTCCAGGTTAGCTTCTTCTCCCTCCGGCAAATCTATTGTGCAAACCACGTTTACACTACCTGTTGTTGCTACACGGACTAAGTTTGAACCGGATTTTGGCTTTGAGGAATTATGATTTCTCAGCCTTGGAATACTGTTTGTTTGGTTAATTTCTGAAAGCATGTTATTGAAAAGAATCCGATAATTAGAAAAGAACTTTGATGTAGTTAATGTTTTGAGGGTTTTGGTTGTTTTGAATCTGTATATTATTTAAACAGTGAATGAATGTCTACAGAAGGGTACAGAGCTAGTTCAAGCTATTGCTAATGAACTTTTCATCCTGCCTTCAACTGAAGATAGAGATGGTCCTCTAGTGAAGTTGTCTCAACCTAAAACGAAATTGCCCAGGGAGAAGCCTGTAAGCCCATGAATATTTGATATTTTCGTTTATCGTCTCGTTTGACTTTTAAACTATGGATGTTTACATTTTGGTTGGGTGATGTCTTTCTTTCTTTCCAGCTTCCAAAGCCTAAGGCTCCTACAAAATGGGAACTTTTTGCTAAAAAACGAGGTTGGACGTTTTTTTTATGCTTTGATCCTGTTTTGTGCTGTTTTGTATTGTATTAAAAGATTCATGTTTCCAATCCTTCAATTGTGTGGATTGAATTGAATTGAGCTGAAAGTCTGACTTGCTGTAAAGGAAAAAACTGGTAAAGATGAAAAGAAACAACTAACAAGAAGAATGAGAGGCATCCGAACACAGGACTTTTGAATTGGGAGTTTCTGGGGTGGAATTTAATTTTAGTACTCTGTGACTTTTGCAGGTATTAAAAACAGGAAAAAAGATAAGATTCTGTATGATGAACAAACTCAAACATGGAAGCGTCGCCATGGTTATGATCGTGCAAATGATGAGGAGAACATACCCATCATTGAGGCCAAGATGACAGATGGTATTATTTAATATAACCTTGCATTTTAAGATGGTCTACTTTTCTTGATGTCAAATTTCTGAACATAATAACTTTGACAGAGAGAATTTGAACATTGATACTTGCCCTTTCCACTCTCAACTAATATGGATATCAAAATGCCCATTAAGTATCATGCTTTTTTGCATTTGCAGAGCCGGGGGTCGATCCCTTTGCTAAGAGGAAAGAAAATAAGAGGAAACGAGTTGAAAAGCAAGAAAATAATCGCTTACAGAATCTGAAACAAGCTGCAAAAGTTGGTGCTTTGCCAAGGTTTTACCCTCTTATCACAGTTATTGGGTGTTGATCAAGTAATTAGATTATATCTTCTCACAATCATACTAATGCGTTTGTTTGGGTATTTAAATTTCTTCGATATTGGCCCATCTGTTTGTACTTTGGGTAGGAAGGTGGAGCATATGACCACAACTTGTACCTGTTAAACCCATTGATTTGTGCCTTTCGTTTCCGACAATATCATAATGTCTGAAATCTCTTTTGATTTTCATCAGTTTCCGGTTATATATAAGCTAAGTTGATTAAACTCATGCAGCCATGTTCAACTAGCTGCAACGGCTCTGCCCATAACCGGGACGCAAGCTACAACAAAGAAAATTACAAAAGACGAGCTTGGAAACGTGGCTGGAATGGCTGCAACCGCAACAGCTAGCGGTGGAAAATTCGACAAGAAGTTGCCTGGAGAAAAGCCTCCAAAGCATGAAGGAAAATATCGCAAGGTTAACTAGACAATCCTTCTCCTTGCCATGCTCCGGCATAATATATGCCTATCATAAAGTTAAATATTTTGTTCTTTGTTTACACGCAGTTTTTACCCGTTGTGGAAGGAACGGGCGTTGGGTCTCGAGAAAGGGAGCAAACTGAGAAAGTCCTGAACCGTCTAATATCAAAGAATTCACATGAGATACTAAACATCAATAAGGTCGTTAGATCATACTTTTCTTTGTTTTGGTTTCAACAACCGACATCTTTCTTCGTTGCTCCATGGTTGTAAATTCTGTCTAATGGTCTTCACTAATTATCCTGAGTATAGGCTGTGAACATGTACAACGTGAAAAGAGAAAAGAGGCGCAAACATGATGATAGAAAGCCTTCATCATCAACATCGAGCAAGTTGAAAGCAAATAAGAAACTTCAGAAGAAGCCGCTGAAGAAGGGATCATCGAAGAAAGGACAGGCCAAATGAGGTTATTACCCTTTATAATGGTTAGTATTTTAACTAAGAGTTCTTGTACTACACAATCTTCTTTATGGAAGGAATTTTGCATTTGGACTGTTTATTGTAGTAATTATCTTCTCCATTCAAGGAATAGTGCCTCCCTTTCTCACACACTATCAGAAGACGAATATGTAGTTTTTTTTTTTT

mRNA sequence

ATGGAGACGCCGCAGGAAGTTCTGGTCGACATTGGTCATCTAATGGCGTTCAATCCTCACCACCATTTCACTTCCCCGCCGTCCTCCAGGTTAGCTTCTTCTCCCTCCGGCAAATCTATTGTGCAAACCACGTTTACACTACCTAAGGGTACAGAGCTAGTTCAAGCTATTGCTAATGAACTTTTCATCCTGCCTTCAACTGAAGATAGAGATGGTCCTCTAGTGAAGTTGTCTCAACCTAAAACGAAATTGCCCAGGGAGAAGCCTCTTCCAAAGCCTAAGGCTCCTACAAAATGGGAACTTTTTGCTAAAAAACGAGGTATTAAAAACAGGAAAAAAGATAAGATTCTGTATGATGAACAAACTCAAACATGGAAGCGTCGCCATGGTTATGATCGTGCAAATGATGAGGAGAACATACCCATCATTGAGGCCAAGATGACAGATGAGCCGGGGGTCGATCCCTTTGCTAAGAGGAAAGAAAATAAGAGGAAACGAGTTGAAAAGCAAGAAAATAATCGCTTACAGAATCTGAAACAAGCTGCAAAAGTTGGTGCTTTGCCAAGCCATGTTCAACTAGCTGCAACGGCTCTGCCCATAACCGGGACGCAAGCTACAACAAAGAAAATTACAAAAGACGAGCTTGGAAACGTGGCTGGAATGGCTGCAACCGCAACAGCTAGCGGTGGAAAATTCGACAAGAAGTTGCCTGGAGAAAAGCCTCCAAAGCATGAAGGAAAATATCGCAAGTTTTTACCCGTTGTGGAAGGAACGGGCGTTGGGTCTCGAGAAAGGGAGCAAACTGAGAAAGTCCTGAACCGTCTAATATCAAAGAATTCACATGAGATACTAAACATCAATAAGGCTGTGAACATGTACAACGTGAAAAGAGAAAAGAGGCGCAAACATGATGATAGAAAGCCTTCATCATCAACATCGAGCAAGTTGAAAGCAAATAAGAAACTTCAGAAGAAGCCGCTGAAGAAGGGATCATCGAAGAAAGGACAGGCCAAATGAGGTTATTACCCTTTATAATGGTTAGTATTTTAACTAAGAGTTCTTGTACTACACAATCTTCTTTATGGAAGGAATTTTGCATTTGGACTGTTTATTGTAGTAATTATCTTCTCCATTCAAGGAATAGTGCCTCCCTTTCTCACACACTATCAGAAGACGAATATGTAGTTTTTTTTTTTT

Coding sequence (CDS)

ATGGAGACGCCGCAGGAAGTTCTGGTCGACATTGGTCATCTAATGGCGTTCAATCCTCACCACCATTTCACTTCCCCGCCGTCCTCCAGGTTAGCTTCTTCTCCCTCCGGCAAATCTATTGTGCAAACCACGTTTACACTACCTAAGGGTACAGAGCTAGTTCAAGCTATTGCTAATGAACTTTTCATCCTGCCTTCAACTGAAGATAGAGATGGTCCTCTAGTGAAGTTGTCTCAACCTAAAACGAAATTGCCCAGGGAGAAGCCTCTTCCAAAGCCTAAGGCTCCTACAAAATGGGAACTTTTTGCTAAAAAACGAGGTATTAAAAACAGGAAAAAAGATAAGATTCTGTATGATGAACAAACTCAAACATGGAAGCGTCGCCATGGTTATGATCGTGCAAATGATGAGGAGAACATACCCATCATTGAGGCCAAGATGACAGATGAGCCGGGGGTCGATCCCTTTGCTAAGAGGAAAGAAAATAAGAGGAAACGAGTTGAAAAGCAAGAAAATAATCGCTTACAGAATCTGAAACAAGCTGCAAAAGTTGGTGCTTTGCCAAGCCATGTTCAACTAGCTGCAACGGCTCTGCCCATAACCGGGACGCAAGCTACAACAAAGAAAATTACAAAAGACGAGCTTGGAAACGTGGCTGGAATGGCTGCAACCGCAACAGCTAGCGGTGGAAAATTCGACAAGAAGTTGCCTGGAGAAAAGCCTCCAAAGCATGAAGGAAAATATCGCAAGTTTTTACCCGTTGTGGAAGGAACGGGCGTTGGGTCTCGAGAAAGGGAGCAAACTGAGAAAGTCCTGAACCGTCTAATATCAAAGAATTCACATGAGATACTAAACATCAATAAGGCTGTGAACATGTACAACGTGAAAAGAGAAAAGAGGCGCAAACATGATGATAGAAAGCCTTCATCATCAACATCGAGCAAGTTGAAAGCAAATAAGAAACTTCAGAAGAAGCCGCTGAAGAAGGGATCATCGAAGAAAGGACAGGCCAAATGA

Protein sequence

METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANELFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQAAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK

Homology

[Close]

BLAST of Carg09908-RA vs. NCBI nr
Match: KAG7023528.1 (Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 642.9 bits (1657), Expect = 1.6e-180
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE
Sbjct: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE
Sbjct: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ
Sbjct: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK
Sbjct: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR
Sbjct: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK
Sbjct: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 338

[Close]

BLAST of Carg09908-RA vs. NCBI nr
Match: KAG6589856.1 (Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 600.9 bits (1548), Expect = 6.8e-168
Identity = 322/338 (95.27%), Postives = 324/338 (95.86%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           METPQEVLVDIGHLMAFNPHHHFTSPPSSR       + +V     L KGTELVQAIANE
Sbjct: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSR-------EELVNE--CLQKGTELVQAIANE 60

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE
Sbjct: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ
Sbjct: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK
Sbjct: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR
Sbjct: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK
Sbjct: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Carg09908-RA vs. NCBI nr
Match: XP_023515967.1 (ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515969.1 ribosome biogenesis regulatory protein homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 594.7 bits (1532), Expect = 4.9e-166
Identity = 318/338 (94.08%), Postives = 322/338 (95.27%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           METPQEV VDIGHLMAFNPHHHFTSPPSSR       + +V     L KGTELVQAIANE
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSR-------EELVNE--CLQKGTELVQAIANE 60

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE
Sbjct: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKR+ENKRKRVEKQENNRLQNLKQ
Sbjct: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQ 180

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK
Sbjct: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVKREKR
Sbjct: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKR 300

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           RKHDDRKPSSSTSSKLK NKKLQKKPLKKGSSKKGQAK
Sbjct: 301 RKHDDRKPSSSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Carg09908-RA vs. NCBI nr
Match: XP_022961058.1 (ribosome biogenesis regulatory protein homolog [Cucurbita moschata])

HSP 1 Score: 593.2 bits (1528), Expect = 1.4e-165
Identity = 318/338 (94.08%), Postives = 321/338 (94.97%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           METPQEV VDIGHLMAFNPHHHFTSPPSSR       + +V     L KGTELVQAIANE
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSR-------EELVNE--CLQKGTELVQAIANE 60

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE
Sbjct: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKR+ENKRKRVEKQENNRLQNLKQ
Sbjct: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQ 180

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQA TKKITKDELGNVAGMAATATASGGKFDKKLPGEK
Sbjct: 181 AAKVGALPSHVQLAATALPITGTQAATKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR
Sbjct: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           RKHDDRKPSSSTSSKLK NKKLQKKPLKKGSSKKGQAK
Sbjct: 301 RKHDDRKPSSSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Carg09908-RA vs. NCBI nr
Match: XP_022987784.1 (ribosome biogenesis regulatory protein homolog [Cucurbita maxima])

HSP 1 Score: 588.6 bits (1516), Expect = 3.5e-164
Identity = 315/338 (93.20%), Postives = 321/338 (94.97%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           METPQEV VDIGHLMAF+PHHHFTSPP       P+ + +V     L KGTELVQAIANE
Sbjct: 1   METPQEVQVDIGHLMAFDPHHHFTSPP-------PTREELVNE--CLQKGTELVQAIANE 60

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE
Sbjct: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKR+ENKRKRVEKQENNRLQNLKQ
Sbjct: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQ 180

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK
Sbjct: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR
Sbjct: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           RKHDDRKPSSSTSSKLK NKKLQKKPLKKGSSKKG+AK
Sbjct: 301 RKHDDRKPSSSTSSKLKPNKKLQKKPLKKGSSKKGKAK 329

[Close]

BLAST of Carg09908-RA vs. ExPASy Swiss-Prot
Match: Q9SH88 (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 378.6 bits (971), Expect = 7.2e-104
Identity = 205/329 (62.31%), Postives = 254/329 (77.20%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           MET Q   VD+G+L+AFNP+H F S PSSR      G+ + +    L +GT+LVQ IAN+
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSR------GELVKE---ILTEGTKLVQEIANK 64

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LF  PSTE  DGP+V+L  P TKLPREK +P+PK PTKWE FA K+GI+ RKK+K+++DE
Sbjct: 65  LFNFPSTETNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDE 124

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QT  +KRRHGYDR ND+ ++PIIEAK +DEPGVDPFAKR ++K+KRV KQE NRLQNLK 
Sbjct: 125 QTNQFKRRHGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKA 184

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           A K GALPSHVQLAAT+LPI+GT+A  KKI KDELG+VAG+AAT+TASGGKFDKKLPGEK
Sbjct: 185 AEKAGALPSHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEK 244

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPK +GK+ K+LPVV G G  + E+EQT  VL+++ SK+SHEILN+ KA+NMYNVK+EK+
Sbjct: 245 PPKKQGKHHKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKK 304

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKK 330
           +        S  S KLK  K + KKP  K
Sbjct: 305 K--------SGRSDKLKPKKDITKKPANK 316

[Close]

BLAST of Carg09908-RA vs. ExPASy Swiss-Prot
Match: Q15050 (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 PE=1 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 6.9e-30
Identity = 111/335 (33.13%), Postives = 182/335 (54.33%), Query Frame = 0


Query: 6   EVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANELFILP 65
           E+  D+G+L+A +      +PP+    + P+ ++ +Q         +  Q + N+L+ LP
Sbjct: 31  ELQFDLGNLLASD-----RNPPTGLRCAGPTPEAELQAL-----ARDNTQLLINQLWQLP 90

Query: 66  STEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTW 125
           +    +  + +L +P T+LPREKPLP+P+  T+W+ FA+ +GI+ +KK  +++DE +  W
Sbjct: 91  TERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQW 150

Query: 126 KRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQAAKVG 185
           +RR GY RA D+    +IE     +P  D FAKR + K++RV K E NRL+NL +A K+ 
Sbjct: 151 RRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM- 210

Query: 186 ALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHE 245
            LPS     A  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK P+  
Sbjct: 211 QLPS-----AAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGS 270

Query: 246 GKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDD 305
           GK RKF P+    G  + E++   ++L  + SK     L++ +A N     RE+ ++   
Sbjct: 271 GKKRKFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN--KQMREEDQEEAA 330

Query: 306 RKPSSSTSSKLKANK-----KLQKKPLKKGSSKKG 336
           ++   S   K K  +     K +  P  +G  +KG
Sbjct: 331 KRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKG 336

[Close]

BLAST of Carg09908-RA vs. ExPASy Swiss-Prot
Match: Q2KIH4 (Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.8e-29
Identity = 107/330 (32.42%), Postives = 180/330 (54.55%), Query Frame = 0


Query: 6   EVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANELFILP 65
           E+  D+G+L+A +      +PP+    + P+ ++ ++         +  Q + N+L+ LP
Sbjct: 31  ELEFDLGNLLASD-----RNPPTGLRHAGPTQEAELRAL-----ARDNTQLLINQLWQLP 90

Query: 66  STEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTW 125
           +    +  + +L +P T+LPREKP+P+P+  T+W+ FA+ +GI+ +KK  +++DE +  W
Sbjct: 91  TERVEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRW 150

Query: 126 KRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQAAKVG 185
           +RR GY RA D+    +IE     +P  D FAKR + K++RV K E NRL+NL +A K+ 
Sbjct: 151 RRRWGYQRARDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM- 210

Query: 186 ALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHE 245
            LPS     A  +  TG Q      +K+ELG    +A  +TAS G+F ++LP EK P+  
Sbjct: 211 QLPS-----AAGMHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGS 270

Query: 246 GKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDD 305
           GK RKF P+    G  + ER+   ++L  + SK     ++I +A N     RE+ ++   
Sbjct: 271 GKKRKFQPLF---GDFAAERKSQLEMLRVMNSKKPQ--MDITRATN--KQMREEDQEEAA 330

Query: 306 RKPSSSTSSKLKANKKLQKKPLKKGSSKKG 336
           ++   S   K K  ++      K G+  +G
Sbjct: 331 KRRKMSQKGKRKGGRQGPGSKRKGGTPSQG 331

[Close]

BLAST of Carg09908-RA vs. ExPASy Swiss-Prot
Match: Q9CYH6 (Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.6e-29
Identity = 107/333 (32.13%), Postives = 182/333 (54.65%), Query Frame = 0


Query: 6   EVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANELFILP 65
           E+  D+G+L+A +      +PP+    + PS ++ ++         +  Q + N+L+ LP
Sbjct: 31  ELEFDLGNLLASD-----RNPPTVLRQAGPSPEAELRAL-----ARDNTQLLINQLWRLP 90

Query: 66  STEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTW 125
           +    +  + +L +P T+LPREKPLP+P+  T+W+ FA+ +GI+ +KK  +++DE +  W
Sbjct: 91  TERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQW 150

Query: 126 KRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQAAKVG 185
           +RR GY RA D+    +IE   + +P  D FAKR + K++RV K E NRL+NL +A K+ 
Sbjct: 151 RRRWGYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM- 210

Query: 186 ALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHE 245
            +PS     +  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK P+  
Sbjct: 211 QMPS-----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGS 270

Query: 246 GKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDD 305
           GK RKF P+    G  + E++   ++L  + SK     L++ +A N     RE+ ++   
Sbjct: 271 GKKRKFQPLF---GDFAAEKKNQLELLRVMNSKKPR--LDVTRATN--KQMREEDQEEAA 330

Query: 306 RKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           ++   S   K K  ++      K G   +G+ +
Sbjct: 331 KRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKR 334

[Close]

BLAST of Carg09908-RA vs. ExPASy Swiss-Prot
Match: A1A5P2 (Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=Rrs1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-28
Identity = 107/333 (32.13%), Postives = 181/333 (54.35%), Query Frame = 0


Query: 6   EVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANELFILP 65
           E+  D+G+L+A +      +PP+    + PS ++ ++         +  Q + N+L+ LP
Sbjct: 31  ELEFDLGNLLASD-----RNPPTVLRQAGPSPEAELRAL-----ARDNTQLLVNQLWQLP 90

Query: 66  STEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTW 125
           +    +  + +L +P T+LPREKPLP+P+  T+W+ FA+ +GI+ +KK  +++DE +  W
Sbjct: 91  TERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQW 150

Query: 126 KRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQAAKVG 185
           +RR GY RA D+    +IE   + +P  D FAKR   K++RV K E NRL+NL +A K+ 
Sbjct: 151 RRRWGYKRARDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM- 210

Query: 186 ALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHE 245
            +PS     +  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK P+  
Sbjct: 211 QMPS-----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGS 270

Query: 246 GKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDD 305
           GK RKF P+    G  + E++   ++L  + SK     L++ +A N     RE+ ++   
Sbjct: 271 GKKRKFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN--KQMREEDQEEAA 330

Query: 306 RKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           ++   S   K K  ++      K G   +G+ +
Sbjct: 331 KRRKMSQKGKKKGGRQGPSGRRKGGPPSQGEKR 334

[Close]

BLAST of Carg09908-RA vs. ExPASy TrEMBL
Match: A0A6J1HAS5 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111461680 PE=3 SV=1)

HSP 1 Score: 593.2 bits (1528), Expect = 6.9e-166
Identity = 318/338 (94.08%), Postives = 321/338 (94.97%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           METPQEV VDIGHLMAFNPHHHFTSPPSSR       + +V     L KGTELVQAIANE
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSR-------EELVNE--CLQKGTELVQAIANE 60

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE
Sbjct: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKR+ENKRKRVEKQENNRLQNLKQ
Sbjct: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQ 180

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQA TKKITKDELGNVAGMAATATASGGKFDKKLPGEK
Sbjct: 181 AAKVGALPSHVQLAATALPITGTQAATKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR
Sbjct: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           RKHDDRKPSSSTSSKLK NKKLQKKPLKKGSSKKGQAK
Sbjct: 301 RKHDDRKPSSSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Carg09908-RA vs. ExPASy TrEMBL
Match: A0A6J1JJT9 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111485227 PE=3 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 1.7e-164
Identity = 315/338 (93.20%), Postives = 321/338 (94.97%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           METPQEV VDIGHLMAF+PHHHFTSPP       P+ + +V     L KGTELVQAIANE
Sbjct: 1   METPQEVQVDIGHLMAFDPHHHFTSPP-------PTREELVNE--CLQKGTELVQAIANE 60

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE
Sbjct: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKR+ENKRKRVEKQENNRLQNLKQ
Sbjct: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQ 180

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK
Sbjct: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR
Sbjct: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           RKHDDRKPSSSTSSKLK NKKLQKKPLKKGSSKKG+AK
Sbjct: 301 RKHDDRKPSSSTSSKLKPNKKLQKKPLKKGSSKKGKAK 329

[Close]

BLAST of Carg09908-RA vs. ExPASy TrEMBL
Match: A0A6J1CSP0 (Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC111014399 PE=3 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.2e-146
Identity = 285/338 (84.32%), Postives = 302/338 (89.35%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           ME  Q++ VD+GHLMAFNPHHH TSPPSSR       + +V     L KGTELVQAIANE
Sbjct: 1   MENQQQLQVDLGHLMAFNPHHHLTSPPSSR-------EELVNE--CLQKGTELVQAIANE 60

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LFILPSTEDRDGPLV+L  PKT+LPREK LPKPK PTKWELFAKKRGIKNRKKDKI YDE
Sbjct: 61  LFILPSTEDRDGPLVRLPPPKTRLPREKHLPKPKPPTKWELFAKKRGIKNRKKDKIAYDE 120

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QTQTWKRRHGYDRANDEENIPIIEAKMTDEPG+DPFA+R+ NKRKRVEKQENNRLQNLKQ
Sbjct: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGMDPFAERQSNKRKRVEKQENNRLQNLKQ 180

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQ   KK+TKDELGNVAGMAATATASGGKFD+KL GEK
Sbjct: 181 AAKVGALPSHVQLAATALPITGTQVAPKKMTKDELGNVAGMAATATASGGKFDRKLRGEK 240

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPKH+GKYRKFLPVVEGTGVGSREREQTE VLNRLISKNSHEILN+NKA+NMYNVKREKR
Sbjct: 241 PPKHKGKYRKFLPVVEGTGVGSREREQTENVLNRLISKNSHEILNVNKAINMYNVKREKR 300

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           RKHD  KPSSSTSSKLK NKK QKK +KKG S KG+AK
Sbjct: 301 RKHDG-KPSSSTSSKLKPNKKPQKKSMKKGVSNKGKAK 328

[Close]

BLAST of Carg09908-RA vs. ExPASy TrEMBL
Match: A0A6J1HW20 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111467179 PE=3 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 8.2e-135
Identity = 265/338 (78.40%), Postives = 291/338 (86.09%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           ME  Q   +D+G+LMAFNPHH F S  SSR       + +V     L KG EL Q IAN+
Sbjct: 3   MENQQPFQIDLGNLMAFNPHHKFPSLSSSR-------EDLVSE--CLQKGAELAQFIAND 62

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LF LPSTEDRDGPLV+L  P T+LPREKPLPKPK PTKWELFAKKRGIKNRKKDKI+YD+
Sbjct: 63  LFNLPSTEDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDD 122

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QT +WKRRHGYDRANDEENIPIIEAKMTDEPGVDPFA R+ NK+ RVEKQE N+LQNLKQ
Sbjct: 123 QTGSWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQ 182

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQA  KKITKDELGNVAGMAAT+TASGGKFDKKL GEK
Sbjct: 183 AAKVGALPSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEK 242

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           P KH+GKYRKFLPVVEGTG+GS+EREQTEKVLNRLISKNSHEILNINKAVNMYNVK+EK+
Sbjct: 243 PAKHQGKYRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKK 302

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           +++   K SS +S+KLK NKKLQKKPLKKGSSK G+AK
Sbjct: 303 QRNQRGKSSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of Carg09908-RA vs. ExPASy TrEMBL
Match: A0A6J1F066 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111440969 PE=3 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.4e-134
Identity = 264/338 (78.11%), Postives = 291/338 (86.09%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           ME  Q   +D+G+LMAFNPHH + S  SSR       + +V     L KG EL Q IAN+
Sbjct: 3   MENQQPFQIDLGNLMAFNPHHQYPSLSSSR-------EDLVSE--CLQKGAELAQFIAND 62

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LF LPSTEDRDGPLV+L  P T+LPREKPLPKPK PTKWELFAKKRGIKNRKKDKI+YD+
Sbjct: 63  LFNLPSTEDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDD 122

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QT +WKRRHGYDRANDEENIPIIEAKMTDEPGVDPFA R+ NK+ RVEKQE N+LQNLKQ
Sbjct: 123 QTGSWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQ 182

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           AAKVGALPSHVQLAATALPITGTQA  KKITKDELGNVAGMAAT+TASGGKFDKKL GEK
Sbjct: 183 AAKVGALPSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEK 242

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           P KH+GKYRKFLPVVEGTG+GS+EREQTEKVLNRLISKNSHEILNINKAVNMYNVK+EK+
Sbjct: 243 PAKHQGKYRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKK 302

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 339
           +++   K SS +S+KLK NKKLQKKPLKKGSSK G+AK
Sbjct: 303 QRNQRGKSSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of Carg09908-RA vs. TAIR 10
Match: AT2G37990.1 (ribosome biogenesis regulatory protein (RRS1) family protein )

HSP 1 Score: 378.6 bits (971), Expect = 5.1e-105
Identity = 205/329 (62.31%), Postives = 254/329 (77.20%), Query Frame = 0


Query: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60
           MET Q   VD+G+L+AFNP+H F S PSSR      G+ + +    L +GT+LVQ IAN+
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSR------GELVKE---ILTEGTKLVQEIANK 64

Query: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120
           LF  PSTE  DGP+V+L  P TKLPREK +P+PK PTKWE FA K+GI+ RKK+K+++DE
Sbjct: 65  LFNFPSTETNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDE 124

Query: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180
           QT  +KRRHGYDR ND+ ++PIIEAK +DEPGVDPFAKR ++K+KRV KQE NRLQNLK 
Sbjct: 125 QTNQFKRRHGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKA 184

Query: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240
           A K GALPSHVQLAAT+LPI+GT+A  KKI KDELG+VAG+AAT+TASGGKFDKKLPGEK
Sbjct: 185 AEKAGALPSHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEK 244

Query: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300
           PPK +GK+ K+LPVV G G  + E+EQT  VL+++ SK+SHEILN+ KA+NMYNVK+EK+
Sbjct: 245 PPKKQGKHHKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKK 304

Query: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKK 330
           +        S  S KLK  K + KKP  K
Sbjct: 305 K--------SGRSDKLKPKKDITKKPANK 316

The following BLAST results are available for this feature:

BLAST of Carg09908-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023528.1	1.6e-180	100.00	Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosp...	[more]
KAG6589856.1	6.8e-168	95.27	Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosp...	[more]
XP_023515967.1	4.9e-166	94.08	ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp....	[more]
XP_022961058.1	1.4e-165	94.08	ribosome biogenesis regulatory protein homolog [Cucurbita moschata]	[more]
XP_022987784.1	3.5e-164	93.20	ribosome biogenesis regulatory protein homolog [Cucurbita maxima]	[more]

BLAST of Carg09908-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SH88	7.2e-104	62.31	Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 G...	[more]
Q15050	6.9e-30	33.13	Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 P...	[more]
Q2KIH4	5.8e-29	32.42	Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=...	[more]
Q9CYH6	7.6e-29	32.13	Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 ...	[more]
A1A5P2	1.7e-28	32.13	Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=...	[more]

BLAST of Carg09908-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAS5	6.9e-166	94.08	Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1JJT9	1.7e-164	93.20	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114852...	[more]
A0A6J1CSP0	1.2e-146	84.32	Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1HW20	8.2e-135	78.40	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114671...	[more]
A0A6J1F066	1.4e-134	78.11	Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of Carg09908-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37990.1	5.1e-105	62.31	ribosome biogenesis regulatory protein (RRS1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 158..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 318..338
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 292..338
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..311
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..94
None	No IPR available	PANTHER	PTHR17602:SF5	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..327
IPR007023	Ribosomal biogenesis regulatory protein	PFAM	PF04939	RRS1	coord: 8..178 e-value: 5.2E-47 score: 159.8
IPR007023	Ribosomal biogenesis regulatory protein	PANTHER	PTHR17602	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..327

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09908	Carg09908	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09908-RA:1	Carg09908-RA:1	exon
Carg09908-RA:2	Carg09908-RA:2	exon
Carg09908-RA:3	Carg09908-RA:3	exon
Carg09908-RA:4	Carg09908-RA:4	exon
Carg09908-RA:5	Carg09908-RA:5	exon
Carg09908-RA:6	Carg09908-RA:6	exon
Carg09908-RA:7	Carg09908-RA:7	exon
Carg09908-RA:8	Carg09908-RA:8	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09908-RA:cds	Carg09908-RA:cds	CDS
Carg09908-RA:cds	Carg09908-RA:cds_2	CDS
Carg09908-RA:cds	Carg09908-RA:cds_3	CDS
Carg09908-RA:cds	Carg09908-RA:cds_4	CDS
Carg09908-RA:cds	Carg09908-RA:cds_5	CDS
Carg09908-RA:cds	Carg09908-RA:cds_6	CDS
Carg09908-RA:cds	Carg09908-RA:cds_7	CDS
Carg09908-RA:cds	Carg09908-RA:cds_8	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09908-RA:three_prime_utr	Carg09908-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09908-RA	Carg09908-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0000055	ribosomal large subunit export from nucleus
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor