Carg09868-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09868-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein of unknown function, DUF538
Location	Carg_Chr10: 2814695 .. 2817634 (-)
Sequence length	1055
RNA-Seq Expression	Carg09868-RA
Synteny	Carg09868-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGAGAGAAATATCTTGTATGAAAATAATTGAATATAAATAGTCAATGCCACGACGTCGTTTAACAGGTCAAAGTTTTTCATCGCCATCGGGATATCGTTTGTGGAAGAGAGAACAGTGACGTATCCATCACGACTGGTCAATAACTCGGAAGAAGAAGAAAGAAAGAAAAATCTCAGAAATTTGTAAAGTCTGAAACAACATTTGGTTTGCTTCCGAGGACGATCGGAACTACAAGAAGTTCACCATGAAATCCATCTTCGTTCTTTTTCTCTTCTCAGCTCTCGTTTCTCTTTCGACCCAATCCACCGATTCGAATGACCTAACAGCGCCACCCTCCTCTGCCCACGCTCGCCTCGCCAATTACGGGTTTCCGTTTGGCCTTCTGCCGTCCGCCGTCTCCAGCTACACCATCAATGAAACCTCTGGTGACTTCTCTTTGGACCTCGGCGACTCGTGCAAGTTCACGCTTCCACCGGACAACTACGTGGCTTCCTTTTCTAGGGTTGTCACTGGTAAGATTGCAAAGGGTCGGATCCACAATCTCGACGGGATTCGAGTTCGTGCTTTGTTCCAGTGGTGGTCGATTACTGGTATTAGGTCCACCGGCGAGGATTTGGTCTTCGAGGTTGGGGTGATCACCGCTAAGTATCCGTCCAAGAGTTTCAACGAGAGCCCAGTGTGTGAAGGGCGTCGGTCTTCTTCGTAAGAGGTTCGGGTTTCTTCAATATTCTGCTCTCTGCATCTTTTACGGCCAATTCCACTGTTAGAATTAAAAATTTAGGAGTAATTCTGGATTGGATAGGGATACATGCATGTGAATGAGACTTTTTATCTAATTTTGAAAGCATTGTCTCTGGATTAAATTCTGCAGAAATGGGACGATGATACTGGTTTAAATTTTCTAACGTCTTCCTTTTTAACTGGATTGGATTCTAGTTATCTTCTATATTCACGAATTCTGAACAGAATCTGTATTTTCCTTCCATATTCATATCGTTCCTAATTCAAGGTTTTCTTGATTACACATTGACTAATTTGAGAGGTTAAATATATAATGTTTTCTGCTAAGAATCCCAGAATTTATAATGATGTAAAAAAGAAAAAATCATAGTTTCCAGACGTTGCGGAATGGAAACTTTCTCCTTGTGTAACATCTGCTGGATCACCTTGTAAATATATTAATTATTGGCAGCTGGCTAGTTTTGGCAATAATTTTTAAGCATTGAAGTAACCGGATGGCCTTTGTTGAATCGGCTTCATTGATGAATAGGATCTTTATCTATTTTTGGATCTAACAACTTGGCGTTCTGTGGTTGAAAAGGTGATGGCGTTGCAATTTGGATTCTGAAAAGGAGGGAGTTTAACAAGAACAGAAGCCATTAAGGACAACCATACAATGACAAAACCCGTCTTATTATAAGATATTAAGGCATTGGTGATGTAGGCGATTTTGTTGCACATTAGGCCAAAAAATATGTCCAACCAAGAGGGCTAGCTAGCAAAATCCATTTTTGACTAGGAAGTTGTGAGATCTCACTTGGGTCGGAGAGGGGGAAGCTTTCCTTATAAGGGTGTGGAAACCTCTCTCTAGTAGACGCGTTTTAGAACTGTGAGGCTAATGGCTATACGTAATGGGCCAGAGTGGACAATATCTGCTAGCGGTGTGGTTGGCTGTTACAAATGGTATTAAAGTTGGTCATCGGGGGTGTGCTAGCGAGGACGCTGGCTCCCAAAGGGGTGGACTGTGAGATCTCACATCGGTTGGGAAGGGAACGAAACATTCCTTATAAGAGTGTAAAAATCTCTCTCTATCAGACGCGTTTTAAAACCGCGAGGCTGATGGTGATATGTAACAGACCAAAGCGGATAATATCTACTAGCAGTGGGGTCGGACTGTTATAGAAGTATTTATTATTATGAATAGGACCTTGTCACCTATGGATTTCAAATGACGTTGCTAGTAAGCTGACATAATCAAGGACCTATAGACATAAAACAAACAGAAAGATGATTCTTAGGTAAGGGGAAAAAAGGTTGAGCTAGAGAGAGCGATGGAATAGGAAGTTGAATGTAGAAGTAGTTGTATGATTCTAGACTTTAAAGCTACTGTTCCCTAAGATCTATTTGGTTGGACAAAGAAAAAAACACCATTAGAAGAACCATCCCCGAGGTTGAATGGTCTGATACTCAGACCTTTGATAGAAGAAAGAAAAGTAGAGGATGCGAATAGCTTTAATTTGCTTGCATTGCAGGCATATAACATAGATTATTTTCTGAATGCACATTGTCATTCTCAGGTTCTAGAAAAGCTATCTTGTAGCCTCCAATATACCTTTTACCAAAGAACCTTTTAGCTGGAGTCGTGTTTCTTTAATGTATTTGACCGGCCATGCTGCGATCTTTAGCTATCTTCATTGTGCTCATAACAAAACGAGTGAATTCTCGTTTGTCTGGTTCTTGATTTCTTTGCAAAAAAGCAGATTCCTCAACTTTGTTTCATTTGCTTTTTAAATATCTAATTAGCTTGACTTGTTAAAGTGCAGAATATATAATAGGATCTGTAATTTAATTGGTATTTTGGTTTTGTGCAGGGTATTCATTCACTTGAAGCATAGATGAACTTAGTGGATAATGCATATCATATTATGTTGCCTCTTTAAACTGAAATGTGAACCTACTAATTATTCTGGCTGTGTATCTGCCTGTACTCTGTATATGTTAACTCTTGCTTCTTCTAGTTCTGGATTGATACTCTCTTTTGATTAATAAGGTTTGTTCAGTGCTTGATAATGAGCCGATCAATATTCTATCTCGATCTCGGTTAATATTTGTATCAGCCAAAGTTTAGTATATATTATCCACCTTGACCCGTATCTCCTTTCTTTTTCAGTTTCCACTACACACATGACACGACAAAGCACAGCCCAGTCGTCTCTG

mRNA sequence

AATGAGAGAAATATCTTGTATGAAAATAATTGAATATAAATAGTCAATGCCACGACGTCGTTTAACAGGTCAAAGTTTTTCATCGCCATCGGGATATCGTTTGTGGAAGAGAGAACAGTGACGTATCCATCACGACTGGTCAATAACTCGGAAGAAGAAGAAAGAAAGAAAAATCTCAGAAATTTGTAAAGTCTGAAACAACATTTGGTTTGCTTCCGAGGACGATCGGAACTACAAGAAGTTCACCATGAAATCCATCTTCGTTCTTTTTCTCTTCTCAGCTCTCGTTTCTCTTTCGACCCAATCCACCGATTCGAATGACCTAACAGCGCCACCCTCCTCTGCCCACGCTCGCCTCGCCAATTACGGGTTTCCGTTTGGCCTTCTGCCGTCCGCCGTCTCCAGCTACACCATCAATGAAACCTCTGGTGACTTCTCTTTGGACCTCGGCGACTCGTGCAAGTTCACGCTTCCACCGGACAACTACGTGGCTTCCTTTTCTAGGGTTGTCACTGGTAAGATTGCAAAGGGTCGGATCCACAATCTCGACGGGATTCGAGTTCGTGCTTTGTTCCAGTGGTGGTCGATTACTGGTATTAGGTCCACCGGCGAGGATTTGGTCTTCGAGGTTGGGGTGATCACCGCTAAGTATCCGTCCAAGAGTTTCAACGAGAGCCCAGTGTGTGAAGGGCGTCGGTCTTCTTCGTAAGGTATTCATTCACTTGAAGCATAGATGAACTTAGTGGATAATGCATATCATATTATGTTGCCTCTTTAAACTGAAATGTGAACCTACTAATTATTCTGGCTGTGTATCTGCCTGTACTCTGTATATGTTAACTCTTGCTTCTTCTAGTTCTGGATTGATACTCTCTTTTGATTAATAAGGTTTGTTCAGTGCTTGATAATGAGCCGATCAATATTCTATCTCGATCTCGGTTAATATTTGTATCAGCCAAAGTTTAGTATATATTATCCACCTTGACCCGTATCTCCTTTCTTTTTCAGTTTCCACTACACACATGACACGACAAAGCACAGCCCAGTCGTCTCTG

Coding sequence (CDS)

ATGAAATCCATCTTCGTTCTTTTTCTCTTCTCAGCTCTCGTTTCTCTTTCGACCCAATCCACCGATTCGAATGACCTAACAGCGCCACCCTCCTCTGCCCACGCTCGCCTCGCCAATTACGGGTTTCCGTTTGGCCTTCTGCCGTCCGCCGTCTCCAGCTACACCATCAATGAAACCTCTGGTGACTTCTCTTTGGACCTCGGCGACTCGTGCAAGTTCACGCTTCCACCGGACAACTACGTGGCTTCCTTTTCTAGGGTTGTCACTGGTAAGATTGCAAAGGGTCGGATCCACAATCTCGACGGGATTCGAGTTCGTGCTTTGTTCCAGTGGTGGTCGATTACTGGTATTAGGTCCACCGGCGAGGATTTGGTCTTCGAGGTTGGGGTGATCACCGCTAAGTATCCGTCCAAGAGTTTCAACGAGAGCCCAGTGTGTGAAGGGCGTCGGTCTTCTTCGTAA

Protein sequence

MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETSGDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRSTGEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS

Homology

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BLAST of Carg09868-RA vs. NCBI nr
Match: KAG7023568.1 (hypothetical protein SDJN02_14594 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.4 bits (781), Expect = 2.7e-79
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS
Sbjct: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Carg09868-RA vs. NCBI nr
Match: XP_022961236.1 (uncharacterized protein LOC111461806 [Cucurbita moschata] >XP_022987892.1 uncharacterized protein LOC111485298 [Cucurbita maxima])

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-78
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIFVLFLFSALVSLSTQSTDSNDL APPSSAHARLANYGFPFGLLPSAVSSYTINETS
Sbjct: 1   MKSIFVLFLFSALVSLSTQSTDSNDLKAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Carg09868-RA vs. NCBI nr
Match: XP_023515647.1 (uncharacterized protein LOC111779757 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-77
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIFVLFLFSALVSLSTQSTDSNDL APPSSAHARLANYGFPFGLLPSAVSSYTINETS
Sbjct: 1   MKSIFVLFLFSALVSLSTQSTDSNDLKAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAK RIHNL+GIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKDRIHNLNGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 153

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BLAST of Carg09868-RA vs. NCBI nr
Match: XP_004148715.1 (uncharacterized protein LOC101218800 [Cucumis sativus] >XP_031736120.1 uncharacterized protein LOC101218800 [Cucumis sativus] >KGN65370.1 hypothetical protein Csa_019712 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 3.4e-74
Identity = 143/153 (93.46%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIF+LFLFSAL+SLSTQS DS +L  PPSSAHARLA+YGFPFGLLPSAVSSYTIN+TS
Sbjct: 1   MKSIFLLFLFSALLSLSTQSIDSKNLNIPPSSAHARLADYGFPFGLLPSAVSSYTINDTS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVG+ITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGLITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Carg09868-RA vs. NCBI nr
Match: XP_008463372.1 (PREDICTED: uncharacterized protein LOC103501542 [Cucumis melo] >KAA0046618.1 uncharacterized protein E6C27_scaffold114G001670 [Cucumis melo var. makuwa] >TYK00085.1 uncharacterized protein E5676_scaffold596G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 142/153 (92.81%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIF+LFLFSAL+ LSTQS DS +L  PPSSAHARLA+YGFPFGLLPSAVS+YTINETS
Sbjct: 1   MKSIFLLFLFSALLPLSTQSIDSKNLNIPPSSAHARLADYGFPFGLLPSAVSTYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVG+ITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGLITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Carg09868-RA vs. ExPASy TrEMBL
Match: A0A6J1JBL6 (uncharacterized protein LOC111485298 OS=Cucurbita maxima OX=3661 GN=LOC111485298 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.4e-79
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIFVLFLFSALVSLSTQSTDSNDL APPSSAHARLANYGFPFGLLPSAVSSYTINETS
Sbjct: 1   MKSIFVLFLFSALVSLSTQSTDSNDLKAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Carg09868-RA vs. ExPASy TrEMBL
Match: A0A6J1H9T4 (uncharacterized protein LOC111461806 OS=Cucurbita moschata OX=3662 GN=LOC111461806 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.4e-79
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIFVLFLFSALVSLSTQSTDSNDL APPSSAHARLANYGFPFGLLPSAVSSYTINETS
Sbjct: 1   MKSIFVLFLFSALVSLSTQSTDSNDLKAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Carg09868-RA vs. ExPASy TrEMBL
Match: A0A0A0LTW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385550 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 143/153 (93.46%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIF+LFLFSAL+SLSTQS DS +L  PPSSAHARLA+YGFPFGLLPSAVSSYTIN+TS
Sbjct: 1   MKSIFLLFLFSALLSLSTQSIDSKNLNIPPSSAHARLADYGFPFGLLPSAVSSYTINDTS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVG+ITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGLITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Carg09868-RA vs. ExPASy TrEMBL
Match: A0A5D3BM00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00370 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.2e-74
Identity = 142/153 (92.81%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIF+LFLFSAL+ LSTQS DS +L  PPSSAHARLA+YGFPFGLLPSAVS+YTINETS
Sbjct: 1   MKSIFLLFLFSALLPLSTQSIDSKNLNIPPSSAHARLADYGFPFGLLPSAVSTYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVG+ITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGLITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Carg09868-RA vs. ExPASy TrEMBL
Match: A0A1S3CJ18 (uncharacterized protein LOC103501542 OS=Cucumis melo OX=3656 GN=LOC103501542 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.2e-74
Identity = 142/153 (92.81%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60
           MKSIF+LFLFSAL+ LSTQS DS +L  PPSSAHARLA+YGFPFGLLPSAVS+YTINETS
Sbjct: 1   MKSIFLLFLFSALLPLSTQSIDSKNLNIPPSSAHARLADYGFPFGLLPSAVSTYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVG+ITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGLITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Carg09868-RA vs. TAIR 10
Match: AT5G19590.1 (Protein of unknown function, DUF538 )

HSP 1 Score: 177.9 bits (450), Expect = 6.0e-45
Identity = 88/147 (59.86%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 7   LFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETSGDFSLD 66
           LFL S L+ L     D       P+ AHA L N+GFP GLLP +V  Y +N+TSGDFSL 
Sbjct: 5   LFLLSILILLPISLQDPTPEVKKPTRAHAELTNHGFPIGLLPLSVKDYFLNQTSGDFSLF 64

Query: 67  LGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRSTGEDLVF 126
           L  +CK TLPPDNY+A++S  VTG+I++G+I  L GIRVRA F+ WSITGIRS+G++LVF
Sbjct: 65  LNGACKITLPPDNYIATYSNKVTGRISQGKIAELQGIRVRAFFKSWSITGIRSSGDNLVF 124

Query: 127 EVGVITAKYPSKSFNESPVCEGRRSSS 154
           EV  ITAKYPSK+F+ES  CEG+RSSS
Sbjct: 125 EVAGITAKYPSKNFDESLDCEGKRSSS 151

[Close]

BLAST of Carg09868-RA vs. TAIR 10
Match: AT4G02360.1 (Protein of unknown function, DUF538 )

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 32  SAHARLANYGFPFGLLPSAVSSYTINETSGDFSLDLGDSCKFTLPPDNYVASFSRVVTGK 91
           +A+  +  Y  P G+LP  V  Y +N  +G+F +   D+C+FT+   +Y   +   ++G 
Sbjct: 28  TAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTI--QSYQLKYKSTISGV 87

Query: 92  IAKGRIHNLDGIRVRALFQWWSITGIRSTGEDLVFEVGVITAKYPSKSFNESPVC 147
           I+ G + NL G+ V+ LF W +I  +   G DL F VG+ +A +P+ +F ESP C
Sbjct: 88  ISPGHVKNLKGVSVKVLFFWVNIAEVSLDGADLDFSVGIASASFPAANFEESPQC 140

[Close]

BLAST of Carg09868-RA vs. TAIR 10
Match: AT1G02816.1 (Protein of unknown function, DUF538 )

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-18
Identity = 48/144 (33.33%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 3   SIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETSGD 62
           SIF  FLF     L   + D +  T     A+  L +Y FP G+LP  V SY +++++G 
Sbjct: 7   SIFFFFLFCIPSPLIAAANDDDIPT-----AYTLLQSYNFPVGILPKGVVSYDLDKSTGQ 66

Query: 63  FSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRSTGE 122
           F      SC F L   +Y   +   ++G I++ +I  L G++V+ LF W +I  +   G+
Sbjct: 67  FHAYFNKSCSFAL-QGSYQLDYKSTISGYISENKITKLTGVKVKVLFLWLNIVEVIRNGD 126

Query: 123 DLVFEVGVITAKYPSKSFNESPVC 147
           +L F VG+ +A +    F ESP C
Sbjct: 127 ELEFSVGITSANFEIDEFYESPQC 144

[Close]

BLAST of Carg09868-RA vs. TAIR 10
Match: AT1G02813.1 (Protein of unknown function, DUF538 )

HSP 1 Score: 87.8 bits (216), Expect = 8.2e-18
Identity = 47/144 (32.64%), Postives = 76/144 (52.78%), Query Frame = 0


Query: 3   SIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETSGD 62
           SIF++FL     S+S              S +  L NY  P G+LP  V  Y +N  +G 
Sbjct: 2   SIFIIFLLLLSTSVSVSGQKKR-------SVYQVLENYTLPRGILPEGVHDYDLNRRTGV 61

Query: 63  FSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRSTGE 122
           F +    +C+F++  D+Y   +  V++G I +GR+  L G+ V+ LF W +I+ +   G+
Sbjct: 62  FKVRFNTTCQFSI--DSYKVKYKPVISGIITRGRVIRLIGVSVKVLFFWINISEVSRDGD 121

Query: 123 DLVFEVGVITAKYPSKSFNESPVC 147
           D+ F VG  + ++ SK F +SP C
Sbjct: 122 DVEFFVGAASEEFSSKYFVDSPKC 136

[Close]

BLAST of Carg09868-RA vs. TAIR 10
Match: AT4G02370.1 (Protein of unknown function, DUF538 )

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-17
Identity = 43/143 (30.07%), Postives = 79/143 (55.24%), Query Frame = 0


Query: 4   IFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETSGDF 63
           +F+  L +A+V+ +   T          +A++ L +Y FP G+LP  V +Y ++ T+G F
Sbjct: 12  LFLSSLTAAVVTAAESDT---------PTAYSLLQSYNFPVGILPKGVVAYDLDTTTGKF 71

Query: 64  SLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRSTGED 123
                DSC F L   +Y  ++   ++G I++ ++  L G++V+ LF W +I  +   G++
Sbjct: 72  HAYFNDSCSFNL-VGSYQLNYKSTISGYISENKLKKLTGVKVKVLFLWLNIVEVIRNGDE 131

Query: 124 LVFEVGVITAKYPSKSFNESPVC 147
           + F VG+ +A +  + F ESP C
Sbjct: 132 MEFSVGITSANFAIQEFLESPQC 144

The following BLAST results are available for this feature:

BLAST of Carg09868-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023568.1	2.7e-79	100.00	hypothetical protein SDJN02_14594 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961236.1	1.3e-78	99.35	uncharacterized protein LOC111461806 [Cucurbita moschata] >XP_022987892.1 unchar...	[more]
XP_023515647.1	3.3e-77	98.04	uncharacterized protein LOC111779757 [Cucurbita pepo subsp. pepo]	[more]
XP_004148715.1	3.4e-74	93.46	uncharacterized protein LOC101218800 [Cucumis sativus] >XP_031736120.1 uncharact...	[more]
XP_008463372.1	1.3e-73	92.81	PREDICTED: uncharacterized protein LOC103501542 [Cucumis melo] >KAA0046618.1 unc...	[more]

BLAST of Carg09868-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09868-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JBL6	6.4e-79	99.35	uncharacterized protein LOC111485298 OS=Cucurbita maxima OX=3661 GN=LOC111485298...	[more]
A0A6J1H9T4	6.4e-79	99.35	uncharacterized protein LOC111461806 OS=Cucurbita moschata OX=3662 GN=LOC1114618...	[more]
A0A0A0LTW9	1.6e-74	93.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385550 PE=4 SV=1	[more]
A0A5D3BM00	6.2e-74	92.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CJ18	6.2e-74	92.81	uncharacterized protein LOC103501542 OS=Cucumis melo OX=3656 GN=LOC103501542 PE=...	[more]

BLAST of Carg09868-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19590.1	6.0e-45	59.86	Protein of unknown function, DUF538	[more]
AT4G02360.1	2.1e-18	34.78	Protein of unknown function, DUF538	[more]
AT1G02816.1	6.2e-18	33.33	Protein of unknown function, DUF538	[more]
AT1G02813.1	8.2e-18	32.64	Protein of unknown function, DUF538	[more]
AT4G02370.1	4.0e-17	30.07	Protein of unknown function, DUF538	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 35..140 e-value: 4.1E-28 score: 98.1
IPR007493	Protein of unknown function DUF538	PANTHER	PTHR31676	T31J12.3 PROTEIN-RELATED	coord: 13..153
IPR036758	At5g01610-like superfamily	GENE3D	2.30.240.10		coord: 20..145 e-value: 3.0E-27 score: 97.0
IPR036758	At5g01610-like superfamily	SUPERFAMILY	141562	At5g01610-like	coord: 7..147
None	No IPR available	PANTHER	PTHR31676:SF138	BNAA02G04340D PROTEIN	coord: 13..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09868	Carg09868	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09868-RA:2	Carg09868-RA:2	exon
Carg09868-RA:1	Carg09868-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09868-RA:three_prime_utr	Carg09868-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09868-RA:cds	Carg09868-RA:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09868-RA:five_prime_utr	Carg09868-RA:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09868-RA	Carg09868-RA-protein	polypeptide