Carg09855-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09855-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP-dependent RNA helicase DDX11-like protein
Location	Carg_Chr10: 2881021 .. 2882452 (-)
Sequence length	594
RNA-Seq Expression	Carg09855-RA
Synteny	Carg09855-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTACGAGCCTCCATTGCCAACACCAAGAAGTTCTTCAACAAAACCTTATGCAACTTCAAATCCTTCTTCTCCAGTACCTATCAACGGCTTCCCAAGGCGCCGCCGCCCTTCTCCATCGGCCACGAAATGGATAAAGACTCATCCTTTATGAAGAATAGTAATGGCAATGCAGTTCGTTTTTCGAAGACGATGGACGAGACCCAGATGAAAAAAGTTGAGAAAAATGAAGATAGCATCAAAATTGGAGTGACCCATCAAAGGAAAACGCAAGAAAATTTGAAAGAGTATGATGAGAGAAGAATGTGTTTGGTTGCTAAGAAAATGAAAGAGTTGGAAAAGCTAGACGCTAGAGATGTGGATCATGCTTTGGATATTGAAGAGATTCTTCATTACTACTCTCGTCTCTCTTGTCCAACGTATCTTGAGATTGTGGACAAGTTCTTCATGGACATTTTTGCTGAATTTTGTGCTAATTCATCTTCTCAACAAACTAACCCAATTGGGAAGGAATCATCAGTGGGGTTAGTGAGAAGAAAATCTCGTTTAGGAAACATGGAGTCTTCATCTTCTAATTCTTCTAGACCATGTTTTTGTTAGGTGATATTGTCTACCCTGAACATAAATTCTCATGGTTGTGCTTGGCCTCGTACCAATGGAGATGTATGAACAATTCATTATCATTCTCTAAATTAGCTAATATGAATTCCCTCCCACAATTCTCAACAATTCCTTAATTTCATTTTTAGTACGTTTTGAACCGAAATTTGATGAAGTATTTATGATTCATCTGGATTACACCATAAATTGTAAGAAAGAGTTGTTTGGATAACATAATTCAATCACTTTTAGTGCGTTTTTGCTCAACTTTGAGTCAAGGTGGCTGTGGGCACCTAATCCGGAGGGTGAATGGACGCTGTACTTTTGAGAGAAAGAAACCCAATTAGGAGTTATAAGCCTTGGATTCTAAGTTATGCCTTGGATTCTAAGTTATGTTTTCGAAAAGAAATAATTTATGGTTTGATTGTATTATATGAGTAAAAGCTAAATTGAAGATTATGCAAATCATGATGAAAATCATGAACAAAAGAATCTTAATTTGACCAGGAAACATTCGAATCCAATGACAAATTTGAAGACAGGAGAAAAGGGAGGGATGCCTCCAAAAGTGTGGGAAGAGCTGGATGAAGCAAATCCATGAACAATCATTTGAACAGCGAAAAGTTGTCACTATTGGGCTGGGCCTTTTGGTGTTCTTATCCATCCATTGCCTACCTCAGTACCCGGCCCAGTTTTTACAATGAATTGAATTATGAGTAACTTGGGGAAGTTGATTTGAAGTTTGGTTCTGTTTTAAAACAGGAACAACAACAAGAACAACAACAACGTTGTTCCCCAAATATGCCCCAATGAGTATAGTATTCAGTGA

mRNA sequence

ATGATGCTACGAGCCTCCATTGCCAACACCAAGAAGTTCTTCAACAAAACCTTATGCAACTTCAAATCCTTCTTCTCCAGTACCTATCAACGGCTTCCCAAGGCGCCGCCGCCCTTCTCCATCGGCCACGAAATGGATAAAGACTCATCCTTTATGAAGAATAGTAATGGCAATGCAGTTCGTTTTTCGAAGACGATGGACGAGACCCAGATGAAAAAAGTTGAGAAAAATGAAGATAGCATCAAAATTGGAGTGACCCATCAAAGGAAAACGCAAGAAAATTTGAAAGAGTATGATGAGAGAAGAATGTGTTTGGTTGCTAAGAAAATGAAAGAGTTGGAAAAGCTAGACGCTAGAGATGTGGATCATGCTTTGGATATTGAAGAGATTCTTCATTACTACTCTCGTCTCTCTTGTCCAACGTATCTTGAGATTGTGGACAAGTTCTTCATGGACATTTTTGCTGAATTTTGTGCTAATTCATCTTCTCAACAAACTAACCCAATTGGGAAGGAATCATCAGTGGGGAACAACAACAAGAACAACAACAACGTTGTTCCCCAAATATGCCCCAATGAGTATAGTATTCAGTGA

Coding sequence (CDS)

ATGATGCTACGAGCCTCCATTGCCAACACCAAGAAGTTCTTCAACAAAACCTTATGCAACTTCAAATCCTTCTTCTCCAGTACCTATCAACGGCTTCCCAAGGCGCCGCCGCCCTTCTCCATCGGCCACGAAATGGATAAAGACTCATCCTTTATGAAGAATAGTAATGGCAATGCAGTTCGTTTTTCGAAGACGATGGACGAGACCCAGATGAAAAAAGTTGAGAAAAATGAAGATAGCATCAAAATTGGAGTGACCCATCAAAGGAAAACGCAAGAAAATTTGAAAGAGTATGATGAGAGAAGAATGTGTTTGGTTGCTAAGAAAATGAAAGAGTTGGAAAAGCTAGACGCTAGAGATGTGGATCATGCTTTGGATATTGAAGAGATTCTTCATTACTACTCTCGTCTCTCTTGTCCAACGTATCTTGAGATTGTGGACAAGTTCTTCATGGACATTTTTGCTGAATTTTGTGCTAATTCATCTTCTCAACAAACTAACCCAATTGGGAAGGAATCATCAGTGGGGAACAACAACAAGAACAACAACAACGTTGTTCCCCAAATATGCCCCAATGAGTATAGTATTCAGTGA

Protein sequence

MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAVRFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARDVDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVGNNNKNNNNVVPQICPNEYSIQ

Homology

[Close]

BLAST of Carg09855-RA vs. NCBI nr
Match: KAG7023581.1 (hypothetical protein SDJN02_14607, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.4 bits (999), Expect = 1.8e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60
           MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV
Sbjct: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60

Query: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120
           RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD
Sbjct: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120

Query: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVGNNNK 180
           VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVGNNNK
Sbjct: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVGNNNK 180

Query: 181 NNNNVVPQICPNEYSIQ 198
           NNNNVVPQICPNEYSIQ
Sbjct: 181 NNNNVVPQICPNEYSIQ 197

[Close]

BLAST of Carg09855-RA vs. NCBI nr
Match: XP_022960595.1 (uncharacterized protein LOC111461329 [Cucurbita moschata])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60
           MMLRASIANTKKFFNKTLCNFKSFFS+TYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV
Sbjct: 1   MMLRASIANTKKFFNKTLCNFKSFFSNTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60

Query: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120
           RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD
Sbjct: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120

Query: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG 177
           VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG
Sbjct: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG 176

[Close]

BLAST of Carg09855-RA vs. NCBI nr
Match: KAG6589911.1 (hypothetical protein SDJN03_15334, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342.4 bits (877), Expect = 2.5e-90
Identity = 173/176 (98.30%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60
           MMLRASIANTKKFFNKTLCNFKSFFS+TYQRLPKAPPPFSIGHEMDKDSSFMKN  GNAV
Sbjct: 1   MMLRASIANTKKFFNKTLCNFKSFFSNTYQRLPKAPPPFSIGHEMDKDSSFMKNRTGNAV 60

Query: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120
           RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD
Sbjct: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120

Query: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG 177
           VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG
Sbjct: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG 176

[Close]

BLAST of Carg09855-RA vs. NCBI nr
Match: XP_023515883.1 (uncharacterized protein LOC111779922 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.1 bits (832), Expect = 4.2e-85
Identity = 164/176 (93.18%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60
           M+LRASI+NTKKFFNKTLCN KSFFS+TYQRLPKA PPFSIGHEMDKDSSFMKNSNGNAV
Sbjct: 1   MLLRASISNTKKFFNKTLCNIKSFFSNTYQRLPKAAPPFSIGHEMDKDSSFMKNSNGNAV 60

Query: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120
            FSKT+DETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMC VAKKMKELEKLDARD
Sbjct: 61  HFSKTIDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCSVAKKMKELEKLDARD 120

Query: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG 177
           VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCAN SSQQ NPIG ESS G
Sbjct: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANPSSQQINPIGHESSAG 176

[Close]

BLAST of Carg09855-RA vs. NCBI nr
Match: XP_022987886.1 (uncharacterized protein LOC111485292 [Cucurbita maxima])

HSP 1 Score: 295.8 bits (756), Expect = 2.7e-76
Identity = 154/176 (87.50%), Postives = 160/176 (90.91%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60
           MMLRASI++TKKFFNKTLCNFKSFFS+TYQRLPK          MDKDSSFMKNSNGNAV
Sbjct: 1   MMLRASISSTKKFFNKTLCNFKSFFSNTYQRLPK----------MDKDSSFMKNSNGNAV 60

Query: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120
            FSKT+ ETQMKKVEKNEDSIKIG THQRKTQENLK YDERRMCLVAKKMKELEKLDARD
Sbjct: 61  HFSKTIRETQMKKVEKNEDSIKIGATHQRKTQENLKVYDERRMCLVAKKMKELEKLDARD 120

Query: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG 177
           VDHALDIEEILHYYSRLSCPTYL+IVDKFFMDIFAEFCAN SSQQTNPIG +SSVG
Sbjct: 121 VDHALDIEEILHYYSRLSCPTYLQIVDKFFMDIFAEFCANPSSQQTNPIGHQSSVG 166

[Close]

BLAST of Carg09855-RA vs. ExPASy TrEMBL
Match: A0A6J1H9I9 (uncharacterized protein LOC111461329 OS=Cucurbita moschata OX=3662 GN=LOC111461329 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.5e-92
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60
           MMLRASIANTKKFFNKTLCNFKSFFS+TYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV
Sbjct: 1   MMLRASIANTKKFFNKTLCNFKSFFSNTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60

Query: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120
           RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD
Sbjct: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120

Query: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG 177
           VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG
Sbjct: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG 176

[Close]

BLAST of Carg09855-RA vs. ExPASy TrEMBL
Match: A0A6J1JFL9 (uncharacterized protein LOC111485292 OS=Cucurbita maxima OX=3661 GN=LOC111485292 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 154/176 (87.50%), Postives = 160/176 (90.91%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGNAV 60
           MMLRASI++TKKFFNKTLCNFKSFFS+TYQRLPK          MDKDSSFMKNSNGNAV
Sbjct: 1   MMLRASISSTKKFFNKTLCNFKSFFSNTYQRLPK----------MDKDSSFMKNSNGNAV 60

Query: 61  RFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDARD 120
            FSKT+ ETQMKKVEKNEDSIKIG THQRKTQENLK YDERRMCLVAKKMKELEKLDARD
Sbjct: 61  HFSKTIRETQMKKVEKNEDSIKIGATHQRKTQENLKVYDERRMCLVAKKMKELEKLDARD 120

Query: 121 VDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTNPIGKESSVG 177
           VDHALDIEEILHYYSRLSCPTYL+IVDKFFMDIFAEFCAN SSQQTNPIG +SSVG
Sbjct: 121 VDHALDIEEILHYYSRLSCPTYLQIVDKFFMDIFAEFCANPSSQQTNPIGHQSSVG 166

[Close]

BLAST of Carg09855-RA vs. ExPASy TrEMBL
Match: A0A6J1IF62 (uncharacterized protein LOC111472233 OS=Cucurbita maxima OX=3661 GN=LOC111472233 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.0e-61
Identity = 129/183 (70.49%), Postives = 146/183 (79.78%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKD----SSFMKNSN 60
           M L  SI+ TKKFF KT+CNFKSFFS+TY RLPKA PPF+ G EM KD     SF K++ 
Sbjct: 39  MFLLPSISTTKKFFKKTICNFKSFFSNTYHRLPKAAPPFTAGPEMAKDEVQNGSFTKSNG 98

Query: 61  GNAVRFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQEN----------LKEYDERRMCLV 120
            NAV FSKT+D+TQM +VEKNE SIKIG THQRK+QEN          L EYDERR+CLV
Sbjct: 99  NNAVHFSKTIDKTQMDRVEKNEQSIKIGATHQRKSQENRESRSKRSRRLYEYDERRVCLV 158

Query: 121 AKKMKELEKLDARDVDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQT 170
           AKK+KELEKLDAR+VDH+LDIEEILHYYSRL+CPTYLEIVD FFMD+FAEFC+NSSS Q 
Sbjct: 159 AKKIKELEKLDARNVDHSLDIEEILHYYSRLTCPTYLEIVDTFFMDMFAEFCSNSSSSQH 218

[Close]

BLAST of Carg09855-RA vs. ExPASy TrEMBL
Match: A0A6J1F4Y2 (uncharacterized protein LOC111440909 OS=Cucurbita moschata OX=3662 GN=LOC111440909 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.7e-60
Identity = 131/184 (71.20%), Postives = 146/184 (79.35%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKA-PPPFSIGHEMDKD----SSFMKNS 60
           M L  SI+ TKKFF KTLCNFKSFFS+TY RLPKA PPPF+ G EM KD     SF K++
Sbjct: 1   MFLLPSISTTKKFFQKTLCNFKSFFSNTYHRLPKAPPPPFTAGPEMAKDEVQNGSFTKSN 60

Query: 61  NGNAVRFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQEN----------LKEYDERRMCL 120
             NAV FSKT+D+TQM +VEKNE SIKIG THQRKTQEN          L EYDERR+CL
Sbjct: 61  GNNAVHFSKTIDKTQMDRVEKNEQSIKIGATHQRKTQENRESRSKRSSRLYEYDERRVCL 120

Query: 121 VAKKMKELEKLDARDVDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQ 170
           VAKK+KELEKLDAR+V H+LDIEEILHYYSRL+CPTYLEIVD FFMD+FAEFC+NSSS Q
Sbjct: 121 VAKKIKELEKLDARNVHHSLDIEEILHYYSRLTCPTYLEIVDTFFMDMFAEFCSNSSSSQ 180

[Close]

BLAST of Carg09855-RA vs. ExPASy TrEMBL
Match: A0A6J1CV44 (uncharacterized protein LOC111014544 OS=Momordica charantia OX=3673 GN=LOC111014544 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.5e-51
Identity = 121/193 (62.69%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSIGHEMDKDSS---------- 60
           M+LRASI+NTKKFF KT+CNFKSFFS++Y RLPK PPPF+ G  M+KDS+          
Sbjct: 1   MLLRASISNTKKFFKKTICNFKSFFSTSYHRLPKTPPPFAAGPRMEKDSTFQFISSQKEV 60

Query: 61  ----FMKNSNGNAVRFSKTMDETQM--KKVEKNEDSI-KIGVTHQRKTQENLKE------ 120
               FMKN N NA+ F   M+ETQM  + V+K+  S+  IG THQRK QEN         
Sbjct: 61  QSGGFMKN-NSNALHFPNKMEETQMEIRVVDKSYGSMNNIGATHQRKRQENRDRESSSKY 120

Query: 121 -YDERRMCLVAKKMKELEKLDARDVDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAE 170
             DERRMCLVAKK+KELEKLD+R+VDHALDIEEILHYYSRL+CP YLEIVDKFF +IFAE
Sbjct: 121 IIDERRMCLVAKKIKELEKLDSRNVDHALDIEEILHYYSRLTCPAYLEIVDKFFTEIFAE 180

[Close]

BLAST of Carg09855-RA vs. TAIR 10
Match: AT3G24535.1 (unknown protein; Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-14
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 0


Query: 1   MMLRASIANTKKFFNKTLCNFKSFF--SSTYQRLPKAPPPFSIGHEMDKDSSFMKNSNGN 60
           M+LR+SI+NT+K F KT+ NFKSFF  + TY +LPK P   S     D  +S +  S+ +
Sbjct: 1   MVLRSSISNTRKLFQKTIDNFKSFFFNNGTYHKLPKTPNNTSTNINNDHPNSNIITSSSS 60

Query: 61  AVRFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDA 120
           ++   K         V  N    K      R    +   + + ++ LV  K+KE+EK+  
Sbjct: 61  SIH--KQFQPKPKDYVTTN----KASSLQPRIGDRDETLFSQPKVNLVRTKLKEMEKMMN 120

Query: 121 RDV----DHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEF 158
            D+     +  D+ E LH YSRL    YL++V+ FFM+++++F
Sbjct: 121 DDIISDEYYVSDVIEFLHCYSRLRYTAYLDVVENFFMEVYSDF 157

[Close]

BLAST of Carg09855-RA vs. TAIR 10
Match: AT1G15260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-14
Identity = 55/168 (32.74%), Postives = 86/168 (51.19%), Query Frame = 0


Query: 6   SIANTKKFFNKTLCNFKS-FFSSTYQRLPKAPP---PFSIGHEMDKDSSFMKNSNGNAVR 65
           SI    +F  KTL + KS   SS Y+ LP   P   P+S      +DS      +   + 
Sbjct: 8   SIQRVGRFLKKTLGSIKSTICSSDYKNLPNDTPLLSPYSCSRRCPEDSQTQTKESYTVIC 67

Query: 66  FSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDE--RRMCLVAKKMKELEKLDAR 125
               + +T  +K   N+        H++K ++  + +++  +R   +A+KMK+L  +D R
Sbjct: 68  CDTAVADTTHQKSLNNQ--------HKKKPKKVAEPFEDAKKRGDALAQKMKDLNMVDLR 127

Query: 126 DVDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFAEFCANSSSQQTN 168
           DVDHALD+ E L  YS +  P YL+IVD FF D++ EF    +S + N
Sbjct: 128 DVDHALDVREALRCYSSIRSPVYLDIVDNFFTDMYYEFSDPRTSAKIN 167

[Close]

BLAST of Carg09855-RA vs. TAIR 10
Match: AT3G16070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15260.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-12
Identity = 50/156 (32.05%), Postives = 77/156 (49.36%), Query Frame = 0


Query: 10  TKKFFNKTLCNFKSFFSSTYQRLPKAPPPFSI----GHEMDKDSSFMKNSN------GNA 69
           T  FF++TL + KS      ++LP+    FS      + +D D+ +    N       N+
Sbjct: 5   TNSFFHRTLHSLKSIIIRAGKKLPRPKTHFSCTFCRSNSLDGDNIYASFLNIWESDLENS 64

Query: 70  VRFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQENLKEYDERRMCLVAKKMKELEKLDAR 129
           +     ++     KV++ E        HQ K  E    Y  R    + KK+ E+   +  
Sbjct: 65  IEGPLKLEH----KVQEQEQ------YHQVKKTEACSSYSSRDCDTMEKKINEMYMTETV 124

Query: 130 DVDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFA 156
           D++ ALD+EE LHYYSR+S P YL IVDKFF D+++
Sbjct: 125 DIEQALDVEEALHYYSRISSPVYLNIVDKFFTDLYS 150

The following BLAST results are available for this feature:

BLAST of Carg09855-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023581.1	1.8e-104	100.00	hypothetical protein SDJN02_14607, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022960595.1	1.3e-91	99.43	uncharacterized protein LOC111461329 [Cucurbita moschata]	[more]
KAG6589911.1	2.5e-90	98.30	hypothetical protein SDJN03_15334, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023515883.1	4.2e-85	93.18	uncharacterized protein LOC111779922 [Cucurbita pepo subsp. pepo]	[more]
XP_022987886.1	2.7e-76	87.50	uncharacterized protein LOC111485292 [Cucurbita maxima]	[more]

BLAST of Carg09855-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09855-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9I9	6.5e-92	99.43	uncharacterized protein LOC111461329 OS=Cucurbita moschata OX=3662 GN=LOC1114613...	[more]
A0A6J1JFL9	1.3e-76	87.50	uncharacterized protein LOC111485292 OS=Cucurbita maxima OX=3661 GN=LOC111485292...	[more]
A0A6J1IF62	6.0e-61	70.49	uncharacterized protein LOC111472233 OS=Cucurbita maxima OX=3661 GN=LOC111472233...	[more]
A0A6J1F4Y2	1.7e-60	71.20	uncharacterized protein LOC111440909 OS=Cucurbita moschata OX=3662 GN=LOC1114409...	[more]
A0A6J1CV44	1.5e-51	62.69	uncharacterized protein LOC111014544 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Carg09855-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24535.1	1.4e-14	33.74	unknown protein; Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bact...	[more]
AT1G15260.1	2.4e-14	32.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G16070.1	2.3e-12	32.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..197
None	No IPR available	PANTHER	PTHR35461	BNAANNG14610D PROTEIN	coord: 49..165
None	No IPR available	PANTHER	PTHR35461	BNAANNG14610D PROTEIN	coord: 1..46
None	No IPR available	PANTHER	PTHR35461:SF3	BNAANNG14610D PROTEIN	coord: 1..46
None	No IPR available	PANTHER	PTHR35461:SF3	BNAANNG14610D PROTEIN	coord: 49..165

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09855	Carg09855	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09855-RA:2	Carg09855-RA:2	exon
Carg09855-RA:1	Carg09855-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09855-RA:cds	Carg09855-RA:cds_2	CDS
Carg09855-RA:cds	Carg09855-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09855-RA	Carg09855-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane