|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGATATGTGATACTTCATTCTTAATATTCTCAACTGACTCGGTCGTCCTGGGTGAATGGCAGCAGCAATTGAACCATCCTAGTATTGTGAGATGGAAGAATGTGAGGGATATAATCAGTGAGCAAATAATGGCAATGCCGGAGCAAATGAAGAAGACGGACATGGTGAATTCAGATTAGGAGCTCTCAAGTGTCGTGCTGAACAATGGAAATCAGATAAAAGATGCTGCAGCTGTAACGAACAATGAACGGCAAATCTTATGGACGTATTAACAATTTTGGCAATTGTTCCAGGTACGAATCTTCATAAAACGACATAAAAATGTGAGTCATCTTTTTTGTTTTCTTATTTTTCTCCTGACATAGTTCATCAACTTTTGTGGGTTCCGAACTGCTGAACTTGAAATATGTGCTTTGTCCGCGTCAACCCTCATTGCTCATTCCGATTACGCTCATAATGTGGCTGCAGGCATGCGTTGA mRNA sequence ATGATATGTGATACTTCATTCTTAATATTCTCAACTGACTCGGTCGTCCTGGGTGAATGGCAGCAGCAATTGAACCATCCTAGTATTGTGAGATGGAAGAATGTGAGGGATATAATCAGTGAGCAAATAATGGCAATGCCGGAGCAAATGAAGAAGACGGACATGTTCATCAACTTTTGTGGGTTCCGAACTGCTGAACTTGAAATATGTGCTTTGTCCGCGTCAACCCTCATTGCTCATTCCGATTACGCTCATAATGTGGCTGCAGGCATGCGTTGA Coding sequence (CDS) ATGATATGTGATACTTCATTCTTAATATTCTCAACTGACTCGGTCGTCCTGGGTGAATGGCAGCAGCAATTGAACCATCCTAGTATTGTGAGATGGAAGAATGTGAGGGATATAATCAGTGAGCAAATAATGGCAATGCCGGAGCAAATGAAGAAGACGGACATGTTCATCAACTTTTGTGGGTTCCGAACTGCTGAACTTGAAATATGTGCTTTGTCCGCGTCAACCCTCATTGCTCATTCCGATTACGCTCATAATGTGGCTGCAGGCATGCGTTGA Protein sequence MICDTSFLIFSTDSVVLGEWQQQLNHPSIVRWKNVRDIISEQIMAMPEQMKKTDMFINFCGFRTAELEICALSASTLIAHSDYAHNVAAGMR
Homology
BLAST of Carg09436-RA vs. NCBI nr
Match: KAG7013993.1 (hypothetical protein SDJN02_24163, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 189.5 bits (480), Expect = 1.3e-44 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MICDTSFLIFSTDSVVLGEWQQQLNHPSIVRWKNVRDIISEQIMAMPEQMKKTDMFINFC 60
MICDTSFLIFSTDSVVLGEWQQQLNHPSIVRWKNVRDIISEQIMAMPEQMKKTDMFINFC
Sbjct: 1 MICDTSFLIFSTDSVVLGEWQQQLNHPSIVRWKNVRDIISEQIMAMPEQMKKTDMFINFC 60
Query: 61 GFRTAELEICALSASTLIAHSDYAHNVAAGMR 93
GFRTAELEICALSASTLIAHSDYAHNVAAGMR
Sbjct: 61 GFRTAELEICALSASTLIAHSDYAHNVAAGMR 92
BLAST of Carg09436-RA vs. NCBI nr
Match: KAG6575450.1 (hypothetical protein SDJN03_26089, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 114.8 bits (286), Expect = 4.0e-22 Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0
Query: 1 MICDTSFLIFSTDSVVLGEWQQQLNHPSIVRWKNVRDIISEQIMAMPEQMKKTDM 56
MICDTSFLIFSTDSVVLGEWQQQLNHPSIVRWKNVRDIISE+IMAMPEQMKKTDM
Sbjct: 12 MICDTSFLIFSTDSVVLGEWQQQLNHPSIVRWKNVRDIISEKIMAMPEQMKKTDM 66
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7013993.1 | 1.3e-44 | 100.00 | hypothetical protein SDJN02_24163, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6575450.1 | 4.0e-22 | 98.18 | hypothetical protein SDJN03_26089, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg09436 | Carg09436 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg09436-RA:1 | Carg09436-RA:1 | exon |
| Carg09436-RA:2 | Carg09436-RA:2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg09436-RA:cds | Carg09436-RA:cds_2 | CDS |
| Carg09436-RA:cds | Carg09436-RA:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg09436-RA | Carg09436-RA-protein | polypeptide |
|
