Carg08917-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08917-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	C2H2-like zinc finger protein
Location	Carg_Chr02: 9453079 .. 9453588 (+)
Sequence length	510
RNA-Seq Expression	Carg08917-RA
Synteny	Carg08917-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGAAGAACAGCCTTTACAAGTTGCTGAATCCAGCAGTGTTGAAATGGAAGAAACCCCATCAAGAATCTTCCCTTGTTTGTTCTGTTCAAGGAAGTTTCAAACCTCTCAAGCTTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGCGCACTGCCGTGAGGAAGGCCAAGCGGATATCTGATTACTCCTCCTCGTCGGCGTCGTCACGGCCATTGTCGGTATTTGCAGGCAGCCAACAGCTTCATCATCCAGCTATATTGCCACATCCAATGTACATTGCAGCTCATGGAGCTAGTCTTCATTGTTTCCCCAATAGCCAACAAGTGTTCTATGATGGCTTGGGAGTTGTTCCCAAGTTTGAGGACATGGTTTACTATGGTGGGGTTTGTTCATACAATAGGTATCAATGTGGGGAAGATGAAGAACATGTGTTGAATTGGCAGAGAAGCATAAAGAAAGACAAGGAAAAAGAACAAAAACTTGATCTTTCTCTTCATTTATAG

mRNA sequence

ATGGAAGATGAAGAACAGCCTTTACAAGTTGCTGAATCCAGCAGTGTTGAAATGGAAGAAACCCCATCAAGAATCTTCCCTTGTTTGTTCTGTTCAAGGAAGTTTCAAACCTCTCAAGCTTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGCGCACTGCCGTGAGGAAGGCCAAGCGGATATCTGATTACTCCTCCTCGTCGGCGTCGTCACGGCCATTGTCGGTATTTGCAGGCAGCCAACAGCTTCATCATCCAGCTATATTGCCACATCCAATGTACATTGCAGCTCATGGAGCTAGTCTTCATTGTTTCCCCAATAGCCAACAAGTGTTCTATGATGGCTTGGGAGTTGTTCCCAAGTTTGAGGACATGGTTTACTATGGTGGGGTTTGTTCATACAATAGGTATCAATGTGGGGAAGATGAAGAACATGTGTTGAATTGGCAGAGAAGCATAAAGAAAGACAAGGAAAAAGAACAAAAACTTGATCTTTCTCTTCATTTATAG

Coding sequence (CDS)

ATGGAAGATGAAGAACAGCCTTTACAAGTTGCTGAATCCAGCAGTGTTGAAATGGAAGAAACCCCATCAAGAATCTTCCCTTGTTTGTTCTGTTCAAGGAAGTTTCAAACCTCTCAAGCTTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGCGCACTGCCGTGAGGAAGGCCAAGCGGATATCTGATTACTCCTCCTCGTCGGCGTCGTCACGGCCATTGTCGGTATTTGCAGGCAGCCAACAGCTTCATCATCCAGCTATATTGCCACATCCAATGTACATTGCAGCTCATGGAGCTAGTCTTCATTGTTTCCCCAATAGCCAACAAGTGTTCTATGATGGCTTGGGAGTTGTTCCCAAGTTTGAGGACATGGTTTACTATGGTGGGGTTTGTTCATACAATAGGTATCAATGTGGGGAAGATGAAGAACATGTGTTGAATTGGCAGAGAAGCATAAAGAAAGACAAGGAAAAAGAACAAAAACTTGATCTTTCTCTTCATTTATAG

Protein sequence

MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRISDYSSSSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL

Homology

[Close]

BLAST of Carg08917-RA vs. NCBI nr
Match: KAG6606329.1 (Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036269.1 Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.5 bits (872), Expect = 8.3e-90
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60
           MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR
Sbjct: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60

Query: 61  ISDYSSSSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVP 120
           ISDYSSSSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVP
Sbjct: 61  ISDYSSSSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVP 120

Query: 121 KFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 170
           KFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL
Sbjct: 121 KFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 169

[Close]

BLAST of Carg08917-RA vs. NCBI nr
Match: XP_023532770.1 (protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.9 bits (860), Expect = 2.0e-88
Identity = 166/169 (98.22%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60
           MEDEEQPL VAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR
Sbjct: 93  MEDEEQPLHVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 152

Query: 61  ISDYSSSSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVP 120
           ISDYSSSS SSRPLSVFAGSQQLHHPAILPHPMYIAAHGA+LHCFPNSQQVFYDGLGVVP
Sbjct: 153 ISDYSSSSTSSRPLSVFAGSQQLHHPAILPHPMYIAAHGANLHCFPNSQQVFYDGLGVVP 212

Query: 121 KFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 170
           KFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL
Sbjct: 213 KFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 261

[Close]

BLAST of Carg08917-RA vs. NCBI nr
Match: XP_022996351.1 (protein LATE FLOWERING-like [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 2.9e-87
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60
           MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR
Sbjct: 95  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 154

Query: 61  ISDYSSSSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVP 120
           ISDYSSSS SSRPLSVFAG+QQLHHPAILPHPMYIAAHG +LHCFPNSQQVFYDGLGVVP
Sbjct: 155 ISDYSSSSTSSRPLSVFAGNQQLHHPAILPHPMYIAAHGPNLHCFPNSQQVFYDGLGVVP 214

Query: 121 KFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 170
           KFEDMVYYGGVCSYNRYQCGEDEE+VLNWQRSIKKDKEKEQKLDLSLHL
Sbjct: 215 KFEDMVYYGGVCSYNRYQCGEDEENVLNWQRSIKKDKEKEQKLDLSLHL 263

[Close]

BLAST of Carg08917-RA vs. NCBI nr
Match: XP_022931139.1 (protein LATE FLOWERING [Cucurbita moschata])

HSP 1 Score: 327.0 bits (837), Expect = 9.5e-86
Identity = 162/172 (94.19%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60
           MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR
Sbjct: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60

Query: 61  ISDYSSSSA---SSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLG 120
           +SDYSSSS+   SSRPLSVFAG+QQLHHPAILPHP+YIAAHGA+LHCFPN+QQVFYDGLG
Sbjct: 61  LSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGANLHCFPNNQQVFYDGLG 120

Query: 121 VVPKFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 170
           VVPKFEDMVYYGGVCSYNRYQCGEDE+HVLNWQRSIKKDKEKEQKLDLSLHL
Sbjct: 121 VVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL 172

[Close]

BLAST of Carg08917-RA vs. NCBI nr
Match: XP_038888938.1 (protein LATE FLOWERING [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 4.0e-52
Identity = 119/185 (64.32%), Postives = 140/185 (75.68%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSS--VEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKA 60
           ME EE+  QVAE+++  VEMEETP+R+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKA
Sbjct: 1   MEYEEKLSQVAETNNNIVEMEETPTRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60

Query: 61  KRISDYSSSSAS------SRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVF 120
           KRISDYS++ +S      + P  VF  S Q HHP +LP P+YIA HG +LHCFPN+QQ+ 
Sbjct: 61  KRISDYSTNFSSPPSPFPAPPSLVFPASHQQHHPGLLPQPVYIATHGTNLHCFPNNQQLL 120

Query: 121 YDGLGVVPKFEDMVYYGGVCSYNRY-QCGEDEEHVLNWQRSIKK-------DKEKEQKLD 170
           Y         E+MVY GGVC+ NRY QCG DEE++LNW+RSIKK       DKEKEQKLD
Sbjct: 121 Y---------ENMVYCGGVCTSNRYHQCGADEENLLNWERSIKKDLSRINHDKEKEQKLD 176

[Close]

BLAST of Carg08917-RA vs. ExPASy Swiss-Prot
Match: Q9FKA9 (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.5e-21
Identity = 70/175 (40.00%), Postives = 92/175 (52.57%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60
           +E EE+     E++  +   +  RIFPCLFCSRKF +SQALGGHQNAHKKERTA R+AKR
Sbjct: 10  VEGEEEIKPSKEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKR 69

Query: 61  ISDYSSSSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPN---SQQVFYDG-- 120
             D+ +++     L VF  S   HH  IL +P       AS+ CFP       +F     
Sbjct: 70  AYDFVNNNDFLHTLPVFLSSPSQHHLTILGYPA-----SASVACFPTVHPDHPIFKSSGS 129

Query: 121 -LGVVPKFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 170
            + +    +     GG C   R    +   +V+N       DK K+Q LDLSLHL
Sbjct: 130 HVVLATSHQGRDCKGGYCCQQRVDILDHHYNVVN------SDKGKDQCLDLSLHL 173

[Close]

BLAST of Carg08917-RA vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 12  ESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRIS-----DYSS 71
           ++ S + E  P R+F C +C RKF +SQALGGHQNAHK+ERT  ++A  +       +  
Sbjct: 46  DTKSTKCEANP-RVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRP 105

Query: 72  SSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYD 115
            + +S  L + A S  LHH    P P+    H      F N+  +F+D
Sbjct: 106 YTYTSSSLGMQAHSGLLHHTLSQPQPLVSRFHHQGY--FGNTVPLFFD 150

[Close]

BLAST of Carg08917-RA vs. ExPASy Swiss-Prot
Match: Q9FFX4 (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-08
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 24 RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRK 58
          R+FPC +C RKF TSQALGGHQNAHK+ER A R+
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

[Close]

BLAST of Carg08917-RA vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-08
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 11  AESSSVEMEE-----TPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRI 62
           +ESS+ E ++        R+F C +C RKF +SQALGGHQNAHK+ERT  ++A R+
Sbjct: 65  SESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRM 120

[Close]

BLAST of Carg08917-RA vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 24  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRISDYSSSSASSRPLSVFA 79
           R+F C +C RKF +SQALGGHQNAHK+ERT  ++ +    Y   + SS P S FA
Sbjct: 66  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQ----YYKMTLSSLPSSAFA 116

[Close]

BLAST of Carg08917-RA vs. ExPASy TrEMBL
Match: A0A6J1K4H5 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111491609 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.4e-87
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60
           MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR
Sbjct: 95  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 154

Query: 61  ISDYSSSSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVP 120
           ISDYSSSS SSRPLSVFAG+QQLHHPAILPHPMYIAAHG +LHCFPNSQQVFYDGLGVVP
Sbjct: 155 ISDYSSSSTSSRPLSVFAGNQQLHHPAILPHPMYIAAHGPNLHCFPNSQQVFYDGLGVVP 214

Query: 121 KFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 170
           KFEDMVYYGGVCSYNRYQCGEDEE+VLNWQRSIKKDKEKEQKLDLSLHL
Sbjct: 215 KFEDMVYYGGVCSYNRYQCGEDEENVLNWQRSIKKDKEKEQKLDLSLHL 263

[Close]

BLAST of Carg08917-RA vs. ExPASy TrEMBL
Match: A0A6J1ETH7 (protein LATE FLOWERING OS=Cucurbita moschata OX=3662 GN=LOC111437406 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 4.6e-86
Identity = 162/172 (94.19%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60
           MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR
Sbjct: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60

Query: 61  ISDYSSSSA---SSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLG 120
           +SDYSSSS+   SSRPLSVFAG+QQLHHPAILPHP+YIAAHGA+LHCFPN+QQVFYDGLG
Sbjct: 61  LSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGANLHCFPNNQQVFYDGLG 120

Query: 121 VVPKFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 170
           VVPKFEDMVYYGGVCSYNRYQCGEDE+HVLNWQRSIKKDKEKEQKLDLSLHL
Sbjct: 121 VVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL 172

[Close]

BLAST of Carg08917-RA vs. ExPASy TrEMBL
Match: A0A0A0LE19 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G624040 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.7e-48
Identity = 108/162 (66.67%), Postives = 122/162 (75.31%), Query Frame = 0


Query: 18  MEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRISDYSSSSASSRPLS-- 77
           MEE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRI DYS S  S  P    
Sbjct: 1   MEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTS 60

Query: 78  -VFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVPKFEDMVYYGGVCSY 137
            VFA SQQ HHP +LPHP+YIA HGA+LHCFPN+QQ+ Y         E+MV+ GGVC  
Sbjct: 61  LVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQLLY---------ENMVFCGGVCPS 120

Query: 138 NRYQCGEDEEHVLNWQRSIKK-------DKEKEQKLDLSLHL 170
           NRY   +DEE++LNW+R+IKK       DKEKEQKLDLSLHL
Sbjct: 121 NRYH--QDEENLLNWERNIKKDLSRINHDKEKEQKLDLSLHL 151

[Close]

BLAST of Carg08917-RA vs. ExPASy TrEMBL
Match: A0A5A7VIQ7 (Protein LATE FLOWERING-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002620 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.9e-48
Identity = 112/163 (68.71%), Postives = 126/163 (77.30%), Query Frame = 0


Query: 18  MEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRISDYSSSSAS--SRPLS 77
           MEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRI DYS S  S  S P S
Sbjct: 1   MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFSAPTS 60

Query: 78  -VFAGSQQLHHPA-ILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVPKFEDMVYYGGVCS 137
            VFA SQQ HHPA +LPHP+YIA HGA+LHCFPN+QQ+ Y         E+MV+ GGVCS
Sbjct: 61  LVFAASQQQHHPAGLLPHPVYIATHGANLHCFPNNQQLLY---------ENMVFCGGVCS 120

Query: 138 YNRYQCGEDEEHVLNWQRSIKK-------DKEKEQKLDLSLHL 170
            NRY   +DEE++LNW+R+IK        DKEKEQKLDLSLHL
Sbjct: 121 SNRYH--QDEENLLNWERNIKNDLSRINHDKEKEQKLDLSLHL 152

[Close]

BLAST of Carg08917-RA vs. ExPASy TrEMBL
Match: A0A1S3BIU8 (protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.9e-48
Identity = 119/189 (62.96%), Postives = 136/189 (71.96%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSS---------VEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKE 60
           ME EE   +V E  +         +EMEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKE
Sbjct: 1   MEYEESLSKVVEIETNNNDIVEKVLEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60

Query: 61  RTAVRKAKRISDYSSSSAS--SRPLS-VFAGSQQLHHPA-ILPHPMYIAAHGASLHCFPN 120
           RTA RKAKRI DYS S  S  S P S VFA SQQ HHPA +LPHP+YIA HGA+LHCFPN
Sbjct: 61  RTAARKAKRICDYSVSPPSPFSAPTSLVFAASQQQHHPAGLLPHPVYIATHGANLHCFPN 120

Query: 121 SQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKK-------DKEKE 170
           +QQ+ Y         E+MV+ GGVCS NRY   +DEE++LNW+R+IK        DKEKE
Sbjct: 121 NQQLLY---------ENMVFCGGVCSSNRYH--QDEENLLNWERNIKNDLSRINHDKEKE 178

[Close]

BLAST of Carg08917-RA vs. TAIR 10
Match: AT5G48890.1 (C2H2-like zinc finger protein )

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-22
Identity = 70/175 (40.00%), Postives = 92/175 (52.57%), Query Frame = 0


Query: 1   MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR 60
           +E EE+     E++  +   +  RIFPCLFCSRKF +SQALGGHQNAHKKERTA R+AKR
Sbjct: 10  VEGEEEIKPSKEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKR 69

Query: 61  ISDYSSSSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPN---SQQVFYDG-- 120
             D+ +++     L VF  S   HH  IL +P       AS+ CFP       +F     
Sbjct: 70  AYDFVNNNDFLHTLPVFLSSPSQHHLTILGYPA-----SASVACFPTVHPDHPIFKSSGS 129

Query: 121 -LGVVPKFEDMVYYGGVCSYNRYQCGEDEEHVLNWQRSIKKDKEKEQKLDLSLHL 170
            + +    +     GG C   R    +   +V+N       DK K+Q LDLSLHL
Sbjct: 130 HVVLATSHQGRDCKGGYCCQQRVDILDHHYNVVN------SDKGKDQCLDLSLHL 173

[Close]

BLAST of Carg08917-RA vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 )

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 12  ESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRIS-----DYSS 71
           ++ S + E  P R+F C +C RKF +SQALGGHQNAHK+ERT  ++A  +       +  
Sbjct: 46  DTKSTKCEANP-RVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRP 105

Query: 72  SSASSRPLSVFAGSQQLHHPAILPHPMYIAAHGASLHCFPNSQQVFYD 115
            + +S  L + A S  LHH    P P+    H      F N+  +F+D
Sbjct: 106 YTYTSSSLGMQAHSGLLHHTLSQPQPLVSRFHHQGY--FGNTVPLFFD 150

[Close]

BLAST of Carg08917-RA vs. TAIR 10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 24 RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRK 58
          R+FPC +C RKF TSQALGGHQNAHK+ER A R+
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

[Close]

BLAST of Carg08917-RA vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 )

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-09
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 11  AESSSVEMEE-----TPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRI 62
           +ESS+ E ++        R+F C +C RKF +SQALGGHQNAHK+ERT  ++A R+
Sbjct: 65  SESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRM 120

[Close]

BLAST of Carg08917-RA vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 )

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-09
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 24  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRISDYSSSSASSRPLSVFA 79
           R+F C +C RKF +SQALGGHQNAHK+ERT  ++ +    Y   + SS P S FA
Sbjct: 66  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQ----YYKMTLSSLPSSAFA 116

The following BLAST results are available for this feature:

BLAST of Carg08917-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606329.1	8.3e-90	100.00	Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036...	[more]
XP_023532770.1	2.0e-88	98.22	protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996351.1	2.9e-87	97.04	protein LATE FLOWERING-like [Cucurbita maxima]	[more]
XP_022931139.1	9.5e-86	94.19	protein LATE FLOWERING [Cucurbita moschata]	[more]
XP_038888938.1	4.0e-52	64.32	protein LATE FLOWERING [Benincasa hispida]	[more]

BLAST of Carg08917-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKA9	8.5e-21	40.00	Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1	[more]
Q39266	2.0e-09	37.04	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]
Q9FFX4	3.7e-08	73.53	Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1	[more]
Q39263	8.2e-08	50.00	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
Q42485	1.1e-07	52.73	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]

BLAST of Carg08917-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4H5	1.4e-87	97.04	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111491609 PE=4 SV=...	[more]
A0A6J1ETH7	4.6e-86	94.19	protein LATE FLOWERING OS=Cucurbita moschata OX=3662 GN=LOC111437406 PE=4 SV=1	[more]
A0A0A0LE19	1.7e-48	66.67	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G624040 P...	[more]
A0A5A7VIQ7	2.9e-48	68.71	Protein LATE FLOWERING-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3BIU8	2.9e-48	62.96	protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1	[more]

BLAST of Carg08917-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48890.1	6.0e-22	40.00	C2H2-like zinc finger protein	[more]
AT1G24625.1	1.4e-10	37.04	zinc finger protein 7	[more]
AT5G14010.1	2.6e-09	73.53	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G66140.1	5.9e-09	50.00	zinc finger protein 4	[more]
AT1G80730.1	7.6e-09	52.73	zinc-finger protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 5..76 e-value: 7.7E-7 score: 30.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR45730	ZINC FINGER PROTEIN JAGGED	coord: 17..169
None	No IPR available	PANTHER	PTHR45730:SF80	PROTEIN LATE FLOWERING	coord: 17..169
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 28..48
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 26..53 score: 10.92807
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 22..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg08917	Carg08917	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08917-RA:1	Carg08917-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08917-RA:cds	Carg08917-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg08917-RA	Carg08917-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane