Carg07736-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07736-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 8688865 .. 8690478 (+)
Sequence length417
RNA-Seq ExpressionCarg07736-RA
SyntenyCarg07736-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGCACAAAATGTATATCTGATTCTGAGTGCAGATCACAGTTCTTCGTTTCTAGCAGAGAACAAATTTGCAAGCCTTGTTCTTCTTTCTCAATACTGGAGAGCTTGAATCAGGTGGAACAGAGGTAATTCAAATTTTATTTGTTGTCCAGTCCTGAGTACATTTTCTTAAATATAAGAATCAATCTTTTGTAGAGGAACATATGAGAATCATCTTCAGTTTATTAAATATTTCAAAATTCCAAGAAACTTTTGTAGATGTTCAAGAAACAATCTCAATTTTATCTGCTACATAAATGATCACAGATTGTTGGAGTATCTTCAACCTTCCTAATTCGTCAAGCAATCAAATCCTGCTGCTCAATGCCTGTAGATAGCTTCCTTTTTAAACTTTTCCTTCCTTTTGTGCTTCCTTTCTTGCAGACAAAACGAGTCTATTAAGGAGAGGTTTCTAGCTTATAAAGTGGTTTCTAACTTATAAAGAATGCTTCATTTTTTTCTCCAACCGAGGTGAGATCTCATAATCCACTCCCTTTTTAAGGTTCAGTCAACCCACTGACCCAGTACCTGGCTTTGATACCATTTGTAACCGTCAAGCTCACTGCTAGTAGATATTGTCTTCTTTATGCTTTCCCGAAAGTGTCCGGCTTTGATACCATTTGTAACCGTCAAACTCATTGCTAGTAAATATTGTCTTCTTTATGCTTTCCTGAAAGTGTCCGGCTTTGATACCATTTGTAACCATCAAACCTACTGCTAGTAGATATTGTCTTCTTTATGCTCTCCCTTTCAGGTTCCCTCAAGGTTTTTAAAATACAGTTTCCATACCCTTATAAACAATGTTTTGGTCCTCTCTCTAACCGACGTGGATTGGATATTGTCTTCTTTATGCTTTCCCCAAAGTGTCTGGCTTTGGTATCATTTGTAACCATCAAACCTACTGCTATTTGATATTGTCTTCTCTATGCTCTCCCTTTCGAAGGTTTTTAAAAGGCATCGGTAAGAAAAGGTTTCCATGTCCTTATCAGTCTCCTCTTTAACCAACATGGATCTAACAATCCACCCTTTTGGGGCCAGCGTTCTCGCTGGCACTTATTCTCTCTCTAATGATCTCAGGTAACATTGCTGGTGGCATGAAAAAAATCACTATCTCATAAAAAACAGAGCAAGCTGCATGAATTTGACCAAGGTTTACATACATTTGGATGGGAGAAATTTGCCACAGGCGTACCTTTAACGCTTCATTAACCCGAAAACCGCGAGAATAAGCTGTAATCACAGAACTCCATTCCAAGAGATAACACTTCTTGTAGACATTTCGTCGACCACTTGGCGTGAAGAAGCCAAGTCGTCAGAGCACTCTGGAACACATGTCGACAAGCGAGGTTTGAACAAACATGTCTGATTCGAACCCATCACGGATGAGGTGAGCGTGGAGCATCGTGCCAACTGCCATCACGGATCGAAGCAAGATTTGCGCAAAGGCTTGAGGAGAAGAGAAAATGTGAAATTGTTACCATGAATTCCGAAGTGGCACATAAACGAGTAGGCTTCAAGAGCTTGGGCGAAGAACCCGCCATTGACAGAGCTTCTAATCATCAAGTTCCATAG

mRNA sequence

ATGGGCGGCACAAAATGTATATCTGATTCTGAGTGCAGATCACAGTTCTTCGTTTCTAGCAGAGAACAAATTTGCAAGCCTTGTTCTTCTTTCTCAATACTGGAGAGCTTGAATCAGGTGGAACAGAGAACTCCATTCCAAGAGATAACACTTCTTGTAGACATTTCGTCGACCACTTGGCGTGAAGAAGCCAAGTCGTCAGAGCACTCTGGAACACATGTCGACAAGCGAGGTGAGCGTGGAGCATCGTGCCAACTGCCATCACGGATCGAAGCAAGATTTGCGCAAAGGCTTGAGGAGAAGAGAAAATGTGAAATTGTTACCATGAATTCCGAAGTGGCACATAAACGAGTAGGCTTCAAGAGCTTGGGCGAAGAACCCGCCATTGACAGAGCTTCTAATCATCAAGTTCCATAG

Coding sequence (CDS)

ATGGGCGGCACAAAATGTATATCTGATTCTGAGTGCAGATCACAGTTCTTCGTTTCTAGCAGAGAACAAATTTGCAAGCCTTGTTCTTCTTTCTCAATACTGGAGAGCTTGAATCAGGTGGAACAGAGAACTCCATTCCAAGAGATAACACTTCTTGTAGACATTTCGTCGACCACTTGGCGTGAAGAAGCCAAGTCGTCAGAGCACTCTGGAACACATGTCGACAAGCGAGGTGAGCGTGGAGCATCGTGCCAACTGCCATCACGGATCGAAGCAAGATTTGCGCAAAGGCTTGAGGAGAAGAGAAAATGTGAAATTGTTACCATGAATTCCGAAGTGGCACATAAACGAGTAGGCTTCAAGAGCTTGGGCGAAGAACCCGCCATTGACAGAGCTTCTAATCATCAAGTTCCATAG

Protein sequence

MGGTKCISDSECRSQFFVSSREQICKPCSSFSILESLNQVEQRTPFQEITLLVDISSTTWREEAKSSEHSGTHVDKRGERGASCQLPSRIEARFAQRLEEKRKCEIVTMNSEVAHKRVGFKSLGEEPAIDRASNHQVP
Homology
[Close]
BLAST of Carg07736-RA vs. NCBI nr
Match: KAG7019874.1 (hypothetical protein SDJN02_18839, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.0 bits (702), Expect = 3.5e-70
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MGGTKCISDSECRSQFFVSSREQICKPCSSFSILESLNQVEQRTPFQEITLLVDISSTTW 60
           MGGTKCISDSECRSQFFVSSREQICKPCSSFSILESLNQVEQRTPFQEITLLVDISSTTW
Sbjct: 1   MGGTKCISDSECRSQFFVSSREQICKPCSSFSILESLNQVEQRTPFQEITLLVDISSTTW 60

Query: 61  REEAKSSEHSGTHVDKRGERGASCQLPSRIEARFAQRLEEKRKCEIVTMNSEVAHKRVGF 120
           REEAKSSEHSGTHVDKRGERGASCQLPSRIEARFAQRLEEKRKCEIVTMNSEVAHKRVGF
Sbjct: 61  REEAKSSEHSGTHVDKRGERGASCQLPSRIEARFAQRLEEKRKCEIVTMNSEVAHKRVGF 120

Query: 121 KSLGEEPAIDRASNHQVP 139
           KSLGEEPAIDRASNHQVP
Sbjct: 121 KSLGEEPAIDRASNHQVP 138

[Close]
BLAST of Carg07736-RA vs. NCBI nr
Match: KAE8652567.1 (hypothetical protein Csa_013523 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 84  CQLPSRIEARFAQRLEEKRKCEIVTMNSEVAHKRVGFKSLGEEPAIDRASNHQVP 139
           C +  R  ++    LEE+RK EIV M+S VAHKRVGFK LGE+PAIDRASN QVP
Sbjct: 9   CAITDR--SKIGASLEEERKGEIVAMDSRVAHKRVGFKRLGEKPAIDRASNRQVP 61

The following BLAST results are available for this feature:
BLAST of Carg07736-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019874.13.5e-70100.00hypothetical protein SDJN02_18839, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8652567.11.1e-0763.64hypothetical protein Csa_013523 [Cucumis sativus][more]
BLAST of Carg07736-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07736-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07736-RA vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..82

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg07736Carg07736gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg07736-RA:1Carg07736-RA:1exon
Carg07736-RA:2Carg07736-RA:2exon
Carg07736-RA:3Carg07736-RA:3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg07736-RA:cdsCarg07736-RA:cdsCDS
Carg07736-RA:cdsCarg07736-RA:cds_2CDS
Carg07736-RA:cdsCarg07736-RA:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg07736-RACarg07736-RA-proteinpolypeptide