Carg07168-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07168-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 8097859 .. 8098161 (-)
Sequence length126
RNA-Seq ExpressionCarg07168-RA
SyntenyCarg07168-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACAGTTGACCCGCCTTCCCATCATCGTATGTCCACTCGCCACGTGTAAAACCACGTGTGCGACCACGATGCCTCGCCTTCCCGCCTACTTCGTCTGTAACCCTGCCAAAACGCCTCTATATAAACCTCCTCTCTTCCACTTCTTCTTCACTCGTCTCTACTTACAAAAAAGAACTGCTCCATTTTTACAAATTCTCTTACAGGTTTCTCTTCCGCTGTTGTGGAGGATTTTCTCGAGGAACGAACAACGTTGAAGAATCTTGTTCCGAAGAAGATCTCTCCACCAACAGCGCTTTGA

mRNA sequence

ATGACCACAGTTGACCCGCCTTCCCATCATCGTTTCTCTTCCGCTGTTGTGGAGGATTTTCTCGAGGAACGAACAACGTTGAAGAATCTTGTTCCGAAGAAGATCTCTCCACCAACAGCGCTTTGA

Coding sequence (CDS)

ATGACCACAGTTGACCCGCCTTCCCATCATCGTTTCTCTTCCGCTGTTGTGGAGGATTTTCTCGAGGAACGAACAACGTTGAAGAATCTTGTTCCGAAGAAGATCTCTCCACCAACAGCGCTTTGA

Protein sequence

MTTVDPPSHHRFSSAVVEDFLEERTTLKNLVPKKISPPTAL
Homology
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BLAST of Carg07168-RA vs. NCBI nr
Match: KAG7014359.1 (hypothetical protein SDJN02_24536, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 8.9e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MTTVDPPSHHRFSSAVVEDFLEERTTLKNLVPKKISPPTAL 42
          MTTVDPPSHHRFSSAVVEDFLEERTTLKNLVPKKISPPTAL
Sbjct: 1  MTTVDPPSHHRFSSAVVEDFLEERTTLKNLVPKKISPPTAL 41

The following BLAST results are available for this feature:
BLAST of Carg07168-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014359.18.9e-14100.00hypothetical protein SDJN02_24536, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg07168-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07168-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07168-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg07168Carg07168gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg07168-RA:1Carg07168-RA:1exon
Carg07168-RA:2Carg07168-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg07168-RA:cdsCarg07168-RA:cds_2CDS
Carg07168-RA:cdsCarg07168-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg07168-RACarg07168-RA-proteinpolypeptide